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(-) Description

Title :  GLUTATHIONE TRANSFERASE (THETA CLASS) FROM HUMAN IN COMPLEX WITH THE GLUTATHIONE CONJUGATE OF 1-MENAPHTHYL SULFATE
 
Authors :  J. Rossjohn, W. J. Mckinstry, A. J. Oakley, D. Verger, J. Flanagan, G. Chelvanayagam, K. L. Tan, P. G. Board, M. W. Parker
Date :  08 Mar 98  (Deposition) - 23 Mar 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Rossjohn, W. J. Mckinstry, A. J. Oakley, D. Verger, J. Flanagan, G. Chelvanayagam, K. L. Tan, P. G. Board, M. W. Parker
Human Theta Class Glutathione Transferase: The Crystal Structure Reveals A Sulfate-Binding Pocket Within A Buried Active Site.
Structure V. 6 309 1998
PubMed-ID: 9551553  |  Reference-DOI: 10.1016/S0969-2126(98)00034-3
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE
    Cellular LocationCYTOPLASM
    ChainsA, B
    EC Number2.5.1.18
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHGST T2-2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GGC2Ligand/Ion1-MENAPHTHYL GLUTATHIONE CONJUGATE
2SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:12 , GLY A:111 , TRP A:115 , ARG A:239 , GGC A:301BINDING SITE FOR RESIDUE SO4 A 245
2AC2SOFTWAREGLN B:12 , ARG B:107 , GLY B:108 , TRP B:115 , ARG B:239 , GGC B:301 , HOH B:303BINDING SITE FOR RESIDUE SO4 B 302
3AC3SOFTWAREVAL A:10 , SER A:11 , GLN A:12 , PRO A:13 , HIS A:40 , LYS A:41 , LYS A:53 , LEU A:54 , PRO A:55 , GLU A:66 , SER A:67 , ARG A:107 , TRP A:115 , LEU A:119 , ALA A:235 , SO4 A:245 , ASP B:104BINDING SITE FOR RESIDUE GGC A 301
4AC4SOFTWAREASP A:104 , VAL B:10 , SER B:11 , GLN B:12 , PRO B:13 , LEU B:35 , HIS B:40 , LYS B:41 , GLY B:52 , LYS B:53 , LEU B:54 , PRO B:55 , GLU B:66 , SER B:67 , ARG B:107 , TRP B:115 , LEU B:119 , SO4 B:302BINDING SITE FOR RESIDUE GGC B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LJR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:54 -Pro A:55
2Leu B:54 -Pro B:55

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric/Biological Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_033982M139IGSTT2_HUMANPolymorphism1622002A/BM139I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GST_NTERPS50404 Soluble glutathione S-transferase N-terminal domain profile.GSTT2_HUMAN1-82
 
  2A:1-82
B:1-82
GST2_HUMAN1-82
 
  2A:1-82
B:1-82
2GST_CTERPS50405 Soluble glutathione S-transferase C-terminal domain profile.GSTT2_HUMAN88-224
 
  2A:88-224
B:88-224
GST2_HUMAN88-224
 
  2A:88-224
B:88-224

(-) Exons   (5, 10)

Asymmetric/Biological Unit (5, 10)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002907651aENSE00001833725chr22:24303373-24303207167GSTT2_HUMAN1-38382A:1-38
B:1-38
38
38
1.2ENST000002907652ENSE00001749600chr22:24302568-2430248188GSTT2_HUMAN38-67302A:38-67
B:38-67
30
30
1.3ENST000002907653ENSE00001734445chr22:24300888-24300738151GSTT2_HUMAN67-117512A:67-117
B:67-117
51
51
1.4bENST000002907654bENSE00001727999chr22:24300645-24300472174GSTT2_HUMAN118-175582A:118-175
B:118-175
58
58
1.5bENST000002907655bENSE00001883656chr22:24300119-24299601519GSTT2_HUMAN176-244692A:176-244
B:176-244
69
69

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:244
 aligned with GST2_HUMAN | P0CG29 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
           GST2_HUMAN     1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPKEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRIARIP 244
               SCOP domains d3ljra2 A:1-79 Class theta GST                                                 d3ljra1 A:80-244 Class theta GST                                                                                                                                      SCOP domains
               CATH domains 3ljrA01 A:1-82 Glutaredoxin                                                       3ljrA02 A:83-244  [code=1.20.1050.10, no name defined]                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhh....eeeee......hhh.hhhh.........eeee..eee..hhhhhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhh........hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------I--------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) GST_NTER  PDB: A:1-82 UniProt: 1-82                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (1) ---------------------------------------------------------------------------------------GST_CTER  PDB: A:88-224 UniProt: 88-224                                                                                                  -------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ljr A   1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRIARIP 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

Chain A from PDB  Type:PROTEIN  Length:244
 aligned with GSTT2_HUMAN | P0CG30 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          GSTT2_HUMAN     1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRIARIP 244
               SCOP domains d3ljra2 A:1-79 Class theta GST                                                 d3ljra1 A:80-244 Class theta GST                                                                                                                                      SCOP domains
               CATH domains 3ljrA01 A:1-82 Glutaredoxin                                                       3ljrA02 A:83-244  [code=1.20.1050.10, no name defined]                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhh....eeeee......hhh.hhhh.........eeee..eee..hhhhhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhh........hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------I--------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) GST_NTER  PDB: A:1-82 UniProt: 1-82                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------GST_CTER  PDB: A:88-224 UniProt: 88-224                                                                                                  -------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: A:1-38 UniProt: 1-38  ----------------------------Exon 1.3  PDB: A:67-117 UniProt: 67-117            Exon 1.4b  PDB: A:118-175 UniProt: 118-175                Exon 1.5b  PDB: A:176-244 UniProt: 176-244                            Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2  PDB: A:38-67        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3ljr A   1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRIARIP 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

Chain B from PDB  Type:PROTEIN  Length:244
 aligned with GST2_HUMAN | P0CG29 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
           GST2_HUMAN     1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPKEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRIARIP 244
               SCOP domains d3ljrb2 B:1-79 Class theta GST                                                 d3ljrb1 B:80-244 Class theta GST                                                                                                                                      SCOP domains
               CATH domains 3ljrB01 B:1-82 Glutaredoxin                                                       3ljrB02 B:83-244  [code=1.20.1050.10, no name defined]                                                                                                             CATH domains
           Pfam domains (1) ---------GST_N-3ljrB03 B:10-75                                             -------------------GST_C-3ljrB01 B:95-200                                                                                    -------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------GST_N-3ljrB04 B:10-75                                             -------------------GST_C-3ljrB02 B:95-200                                                                                    -------------------------------------------- Pfam domains (2)
         Sec.struct. author ..eeeee....hhhhhhhhhhhh....eeeee......hhh.hhhh.........eeee..eee..hhhhhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhh........hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------I--------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) GST_NTER  PDB: B:1-82 UniProt: 1-82                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                PROSITE (1) ---------------------------------------------------------------------------------------GST_CTER  PDB: B:88-224 UniProt: 88-224                                                                                                  -------------------- PROSITE (1)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ljr B   1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRIARIP 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

Chain B from PDB  Type:PROTEIN  Length:244
 aligned with GSTT2_HUMAN | P0CG30 from UniProtKB/Swiss-Prot  Length:244

    Alignment length:244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    
          GSTT2_HUMAN     1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRIARIP 244
               SCOP domains d3ljrb2 B:1-79 Class theta GST                                                 d3ljrb1 B:80-244 Class theta GST                                                                                                                                      SCOP domains
               CATH domains 3ljrB01 B:1-82 Glutaredoxin                                                       3ljrB02 B:83-244  [code=1.20.1050.10, no name defined]                                                                                                             CATH domains
           Pfam domains (1) ---------GST_N-3ljrB03 B:10-75                                             -------------------GST_C-3ljrB01 B:95-200                                                                                    -------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------GST_N-3ljrB04 B:10-75                                             -------------------GST_C-3ljrB02 B:95-200                                                                                    -------------------------------------------- Pfam domains (2)
         Sec.struct. author ..eeeee....hhhhhhhhhhhh....eeeee......hhh.hhhh.........eeee..eee..hhhhhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhh........hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------I--------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) GST_NTER  PDB: B:1-82 UniProt: 1-82                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------GST_CTER  PDB: B:88-224 UniProt: 88-224                                                                                                  -------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: B:1-38 UniProt: 1-38  ----------------------------Exon 1.3  PDB: B:67-117 UniProt: 67-117            Exon 1.4b  PDB: B:118-175 UniProt: 118-175                Exon 1.5b  PDB: B:176-244 UniProt: 176-244                            Transcript 1 (1)
           Transcript 1 (2) -------------------------------------Exon 1.2  PDB: B:38-67        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 3ljr B   1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYLSCKYQTPDHWYPSDLQARARVHEYLGWHADCIRGTFGIPLWVQVLGPLIGVQVPEEKVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALEELMQPVALGYELFEGRPRLAAWRGRVEAFLGAELCQEAHSIILSILEQAAKKTLPTPSPEAYQAMLLRIARIP 244
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Clan: GST_C (118)
(-)
Family: GST_C (102)

(-) Gene Ontology  (7, 12)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (GSTT2_HUMAN | P0CG30)
molecular function
    GO:0004364    glutathione transferase activity    Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:1901687    glutathione derivative biosynthetic process    The chemical reactions and pathways resulting in the formation of glutathione derivative.
    GO:0006749    glutathione metabolic process    The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

Chain A,B   (GST2_HUMAN | P0CG29)
molecular function
    GO:0004364    glutathione transferase activity    Catalysis of the reaction: R-X + glutathione = H-X + R-S-glutathione. R may be an aliphatic, aromatic or heterocyclic group; X may be a sulfate, nitrile or halide group.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006749    glutathione metabolic process    The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GST2_HUMAN | P0CG291ljr 2ljr 4mpf 4mpg
        GSTT2_HUMAN | P0CG301ljr 2ljr 4mpg

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3LJR)