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3LJR
Asym. Unit
Info
Asym.Unit (79 KB)
Biol.Unit 1 (75 KB)
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(1)
Title
:
GLUTATHIONE TRANSFERASE (THETA CLASS) FROM HUMAN IN COMPLEX WITH THE GLUTATHIONE CONJUGATE OF 1-MENAPHTHYL SULFATE
Authors
:
J. Rossjohn, W. J. Mckinstry, A. J. Oakley, D. Verger, J. Flanagan, G. Chelvanayagam, K. L. Tan, P. G. Board, M. W. Parker
Date
:
08 Mar 98 (Deposition) - 23 Mar 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Rossjohn, W. J. Mckinstry, A. J. Oakley, D. Verger, J. Flanagan, G. Chelvanayagam, K. L. Tan, P. G. Board, M. W. Parker
Human Theta Class Glutathione Transferase: The Crystal Structure Reveals A Sulfate-Binding Pocket Within A Buried Active Site.
Structure V. 6 309 1998
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 1-MENAPHTHYL GLUTATHIONE CONJUGATE (GGCa)
1b: 1-MENAPHTHYL GLUTATHIONE CONJUGATE (GGCb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GGC
2
Ligand/Ion
1-MENAPHTHYL GLUTATHIONE CONJUGATE
2
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:12 , GLY A:111 , TRP A:115 , ARG A:239 , GGC A:301
BINDING SITE FOR RESIDUE SO4 A 245
2
AC2
SOFTWARE
GLN B:12 , ARG B:107 , GLY B:108 , TRP B:115 , ARG B:239 , GGC B:301 , HOH B:303
BINDING SITE FOR RESIDUE SO4 B 302
3
AC3
SOFTWARE
VAL A:10 , SER A:11 , GLN A:12 , PRO A:13 , HIS A:40 , LYS A:41 , LYS A:53 , LEU A:54 , PRO A:55 , GLU A:66 , SER A:67 , ARG A:107 , TRP A:115 , LEU A:119 , ALA A:235 , SO4 A:245 , ASP B:104
BINDING SITE FOR RESIDUE GGC A 301
4
AC4
SOFTWARE
ASP A:104 , VAL B:10 , SER B:11 , GLN B:12 , PRO B:13 , LEU B:35 , HIS B:40 , LYS B:41 , GLY B:52 , LYS B:53 , LEU B:54 , PRO B:55 , GLU B:66 , SER B:67 , ARG B:107 , TRP B:115 , LEU B:119 , SO4 B:302
BINDING SITE FOR RESIDUE GGC B 301
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033982 (M139I, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033982
M
139
I
GSTT2_HUMAN
Polymorphism
1622002
A/B
M
139
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:1-82,B:1-82,A:1-82,B:1-82)
2: GST_CTER (A:88-224,B:88-224,A:88-224,B:88-22...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTT2_HUMAN
1-82
2
A:1-82
B:1-82
GST2_HUMAN
1-82
2
A:1-82
B:1-82
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTT2_HUMAN
88-224
2
A:88-224
B:88-224
GST2_HUMAN
88-224
2
A:88-224
B:88-224
[
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]
Exons
(5, 10)
Info
All Exons
Exon 1.1a (A:1-38 | B:1-38)
Exon 1.2 (A:38-67 | B:38-67)
Exon 1.3 (A:67-117 | B:67-117)
Exon 1.4b (A:118-175 | B:118-175)
Exon 1.5b (A:176-244 | B:176-244)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4b
5: Boundary 1.4b/1.5b
6: Boundary 1.5b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000290765
1a
ENSE00001833725
chr22:
24303373-24303207
167
GSTT2_HUMAN
1-38
38
2
A:1-38
B:1-38
38
38
1.2
ENST00000290765
2
ENSE00001749600
chr22:
24302568-24302481
88
GSTT2_HUMAN
38-67
30
2
A:38-67
B:38-67
30
30
1.3
ENST00000290765
3
ENSE00001734445
chr22:
24300888-24300738
151
GSTT2_HUMAN
67-117
51
2
A:67-117
B:67-117
51
51
1.4b
ENST00000290765
4b
ENSE00001727999
chr22:
24300645-24300472
174
GSTT2_HUMAN
118-175
58
2
A:118-175
B:118-175
58
58
1.5b
ENST00000290765
5b
ENSE00001883656
chr22:
24300119-24299601
519
GSTT2_HUMAN
176-244
69
2
A:176-244
B:176-244
69
69
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3ljra1 (A:80-244)
1b: SCOP_d3ljrb1 (B:80-244)
2a: SCOP_d3ljra2 (A:1-79)
2b: SCOP_d3ljrb2 (B:1-79)
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Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class theta GST
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3ljra1
A:80-244
1b
d3ljrb1
B:80-244
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class theta GST
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d3ljra2
A:1-79
2b
d3ljrb2
B:1-79
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3ljrA01 (A:1-82)
1b: CATH_3ljrB01 (B:1-82)
2a: CATH_3ljrA02 (A:83-244)
2b: CATH_3ljrB02 (B:83-244)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
3ljrA01
A:1-82
1b
3ljrB01
B:1-82
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
3ljrA02
A:83-244
2b
3ljrB02
B:83-244
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GST_C_3ljrB01 (B:95-200)
1b: PFAM_GST_C_3ljrB02 (B:95-200)
2a: PFAM_GST_N_3ljrB03 (B:10-75)
2b: PFAM_GST_N_3ljrB04 (B:10-75)
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)
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)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Homo sapiens (Human)
(47)
1a
GST_C-3ljrB01
B:95-200
1b
GST_C-3ljrB02
B:95-200
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Homo sapiens (Human)
(45)
2a
GST_N-3ljrB03
B:10-75
2b
GST_N-3ljrB04
B:10-75
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