3LAQ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE-BASED ENGINEERING OF SPECIES SELECTIVITY IN THE UPA-UPAR INTERACTION

Authors :   M. Huang

Date :   06 Jan 10 (Deposition) - 02 Feb 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym. Unit : A,B,U,V
Biol. Unit 1: A,U  (1x)
Biol. Unit 2: B,V  (1x)

Keywords :   Upa, Upar, Atf, Supar, Smupar, Matf, Disulfide Bond, Egf-Like Domain, Hydrolase, Kringle, Plasminogen Activation, Protease, Secreted, Serine Protease, Zymogen, Cell Membrane, Glycoprotein, Gpi-Anchor, Lipoprotein, Membrane, Receptor, Hydrolase-Hydrolase Receptor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Lin, H. Gardsvoll, Q. Huai, M. Huang, M. Ploug
Structure-Based Engineering Of Species Selectivity In The Interaction Between Urokinase And Its Receptor: Implication For Preclinical Cancer Therapy.
J. Biol. Chem. V. 285 10982 2010
PubMed-ID: 20133942 | Reference-DOI: 10.1074/JBC.M109.093492

Molecule 1 - UROKINASE-TYPE PLASMINOGEN ACTIVATOR
	Chains	:	A, B
	EC Number	:	3.4.21.73
	Engineered	:	YES
	Expression System	:	DROSOPHILA
	Expression System Plasmid	:	PMT
	Expression System Strain	:	S2 CELLS
	Expression System Taxid	:	7215
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 21-154
	Gene	:	PLAU
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	U-PLASMINOGEN ACTIVATOR, UPA, UROKINASE-TYPE PLASMINOGEN ACTIVATOR LONG CHAIN A, UROKINASE-TYPE PLASMINOGEN ACTIVATOR SHORT CHAIN A, UROKINASE-TYPE PLASMINOGEN ACTIVATOR CHAIN B

Molecule 2 - UROKINASE PLASMINOGEN ACTIVATOR SURFACE RECEPTOR
	Chains	:	U, V
	Engineered	:	YES
	Expression System	:	DROSOPHILA
	Expression System Plasmid	:	PMT
	Expression System Strain	:	S2 CELLS
	Expression System Taxid	:	7215
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 24-300
	Gene	:	PLAUR
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	UPAR, U-PAR

		1	2	3	4
Asymmetric Unit	:	A	B	U	V
Biological Unit 1 (1x)	:	A		U
Biological Unit 2 (1x)	:		B		V

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 10)

No.	Name	Count	Type	Full Name
1	NAG	10	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	NAG	5	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	NAG	5	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN U:52 , VAL U:70 , NAG U:1053	BINDING SITE FOR RESIDUE NAG U 1052
02	AC2	SOFTWARE	NAG U:1052	BINDING SITE FOR RESIDUE NAG U 1053
03	AC3	SOFTWARE	ASN U:160	BINDING SITE FOR RESIDUE NAG U 1160
04	AC4	SOFTWARE	ASN U:170	BINDING SITE FOR RESIDUE NAG U 1170
05	AC5	SOFTWARE	LEU U:19 , LEU U:258 , ASN U:259	BINDING SITE FOR RESIDUE NAG U 1259
06	AC6	SOFTWARE	ASN V:52 , THR V:69 , NAG V:1053	BINDING SITE FOR RESIDUE NAG V 1052
07	AC7	SOFTWARE	NAG V:1052	BINDING SITE FOR RESIDUE NAG V 1053
08	AC8	SOFTWARE	HIS B:53 , CYS B:132 , ASN V:170	BINDING SITE FOR RESIDUE NAG V 1170
09	AC9	SOFTWARE	ASN V:160 , GLN V:161	BINDING SITE FOR RESIDUE NAG V 1160
10	BC1	SOFTWARE	LEU V:258 , ASN V:259	BINDING SITE FOR RESIDUE NAG V 1259

Asymmetric Unit

No.	Residues
1	A:12	-	A:20
2	A:14	-	A:32
3	A:34	-	A:43
4	A:51	-	A:132
5	A:72	-	A:114
6	A:103	-	A:127
7	B:12	-	B:20
8	B:14	-	B:32
9	B:34	-	B:43
10	B:51	-	B:132
11	B:72	-	B:114
12	B:103	-	B:127
13	U:3	-	U:24
14	U:6	-	U:12
15	U:17	-	U:45
16	U:71	-	U:76
17	U:96	-	U:123
18	U:99	-	U:106
19	U:116	-	U:145
20	U:151	-	U:168
21	U:169	-	U:174
22	U:192	-	U:220
23	U:195	-	U:203
24	U:213	-	U:239
25	U:245	-	U:264
26	U:265	-	U:270
27	V:3	-	V:24
28	V:6	-	V:12
29	V:17	-	V:45
30	V:71	-	V:76
31	V:96	-	V:123
32	V:99	-	V:106
33	V:116	-	V:145
34	V:151	-	V:168
35	V:169	-	V:174
36	V:192	-	V:220
37	V:195	-	V:203
38	V:213	-	V:239
39	V:245	-	V:264
40	V:265	-	V:270

(no "Cis Peptide Bond" information available for 3LAQ)

(no "SAP(SNP)/Variant" information available for 3LAQ)

Asymmetric Unit (5, 13)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LY6_UPAR	PS00983	Ly-6 / u-PAR domain signature.	UPAR_MOUSE	25-68 118-168 214-268	6	U:2-45 V:2-45 U:95-145 V:95-145 U:191-245 V:191-245
2	EGF_3	PS50026	EGF-like domain profile.	UROK_MOUSE	28-64	1	B:8-44
3	EGF_1	PS00022	EGF-like domain signature 1.	UROK_MOUSE	52-63	2	A:32-43 B:32-43
4	KRINGLE_2	PS50070	Kringle domain profile.	UROK_MOUSE	70-152	2	A:50-132 B:50-132
5	KRINGLE_1	PS00021	Kringle domain signature.	UROK_MOUSE	122-134	2	A:102-114 B:102-114

Biological Unit 1 (4, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LY6_UPAR	PS00983	Ly-6 / u-PAR domain signature.	UPAR_MOUSE	25-68 118-168 214-268	3	U:2-45 - U:95-145 - U:191-245 -
2	EGF_3	PS50026	EGF-like domain profile.	UROK_MOUSE	28-64	0	-
3	EGF_1	PS00022	EGF-like domain signature 1.	UROK_MOUSE	52-63	1	A:32-43 -
4	KRINGLE_2	PS50070	Kringle domain profile.	UROK_MOUSE	70-152	1	A:50-132 -
5	KRINGLE_1	PS00021	Kringle domain signature.	UROK_MOUSE	122-134	1	A:102-114 -

Biological Unit 2 (5, 7)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LY6_UPAR	PS00983	Ly-6 / u-PAR domain signature.	UPAR_MOUSE	25-68 118-168 214-268	3	- V:2-45 - V:95-145 - V:191-245
2	EGF_3	PS50026	EGF-like domain profile.	UROK_MOUSE	28-64	1	B:8-44
3	EGF_1	PS00022	EGF-like domain signature 1.	UROK_MOUSE	52-63	1	- B:32-43
4	KRINGLE_2	PS50070	Kringle domain profile.	UROK_MOUSE	70-152	1	- B:50-132
5	KRINGLE_1	PS00021	Kringle domain signature.	UROK_MOUSE	122-134	1	- B:102-114

(no "Exon" information available for 3LAQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:124
 aligned with UROK_MOUSE | P06869 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:124
                                    38        48        58        68        78        88        98       108       118       128       138       148    
           UROK_MOUSE    29 ESNCGCQNGGVCVSYKYFSRIRRCSCPRKFQGEHCEIDASKTCYHGNGDSYRGKANTDTKGRPCLAWNAPAVLQKPYNAHRPDAISLGLGKHNYCRNPDNQKRPWCYVQIGLRQFVQECMVHDC 152
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3laqA01 A:9-50 Laminin                    3laqA02 A:51-132 Plasminogen Kringle 4                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee.hhhh..eee.....ee.....ee................................hhhhh.............................eeeeee..eeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) EGF_3  PDB: - UniProt: 28-64        -----KRINGLE_2  PDB: A:50-132 UniProt: 70-152                                            PROSITE (2)
                PROSITE (3) -----------------------EGF_1       ----------------------------------------------------------KRINGLE_1    ------------------ PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3laq A   9 ESNCGCQNGGVCVSYKYFSRIRRCSCPRKFQGEHCEIDASKTCYHGNGDSYRGKANTDTKGRPCLAWNAPAVLQKPYNAHRPDAISLGLGKHNYCRNPDNQKRPWCYVQIGLRQFVQECMVHDC 132
                                    18        28        38        48        58        68        78        88        98       108       118       128

Chain B from PDB  Type:PROTEIN  Length:125
 aligned with UROK_MOUSE | P06869 from UniProtKB/Swiss-Prot  Length:433

    Alignment length:125
                                    37        47        57        67        77        87        97       107       117       127       137       147     
           UROK_MOUSE    28 DESNCGCQNGGVCVSYKYFSRIRRCSCPRKFQGEHCEIDASKTCYHGNGDSYRGKANTDTKGRPCLAWNAPAVLQKPYNAHRPDAISLGLGKHNYCRNPDNQKRPWCYVQIGLRQFVQECMVHDC 152
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3laqB01 B:8-50 Laminin                     3laqB02 B:51-132 Plasminogen Kringle 4                                             CATH domains
           Pfam domains (1) -------------------------------------------Kringle-3laqB01 B:51-132                                                           Pfam domains (1)
           Pfam domains (2) -------------------------------------------Kringle-3laqB02 B:51-132                                                           Pfam domains (2)
         Sec.struct. author ...........ee...........ee....ee.....ee..............................hhhhhh........hhhhh.................eeee......eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) EGF_3  PDB: B:8-44 UniProt: 28-64    -----KRINGLE_2  PDB: B:50-132 UniProt: 70-152                                            PROSITE (2)
                PROSITE (3) ------------------------EGF_1       ----------------------------------------------------------KRINGLE_1    ------------------ PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3laq B   8 DESNCGCQNGGVCVSYKYFSRIRRCSCPRKFQGEHCEIDASKTCYHGNGDSYRGKANTDTKGRPCLAWNAPAVLQKPYNAHRPDAISLGLGKHNYCRNPDNQKRPWCYVQIGLRQFVQECMVHDC 132
                                    17        27        37        47        57        67        77        87        97       107       117       127

Chain U from PDB  Type:PROTEIN  Length:258
 aligned with UPAR_MOUSE | P35456 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:274
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293    
           UPAR_MOUSE    24 LQCMQCESNQSCLVEECALGQDLCRTTVLREWQDDRELEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCNRPRPGARGRAFPQGRYLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQSTERSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCCNYTHCNGGPVLDLQSFPPNGFQCYSCEGNNTLGCSSEEASLINCRGPMNQCLVATGLDVLGNRSYTVRGCATASWCQGSHVADSFPTHLNVSVSCCHGSGCNSPT 297
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.......eeee.......eeeeeeeee.....eeeeeeee.......eeeeeee..eeeeeee.............-----------..eee.ee............eee.......eeeeeeee..........eeeeeee.....eeeeee...eeeeeeee.....................eeee..............eeee......eeeee...-----....eeeee.......hhhhhh........eeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: U:2-45 UniProt: 25-68        -------------------------------------------------LY6_UPAR  PDB: U:95-145 UniProt: 118-168           ---------------------------------------------LY6_UPAR  PDB: U:191-245 UniProt: 214-268              ----------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3laq U   1 LQCMQCESNQSCLVEECALGQDLCRTTVLREWQDDRELEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCNRPRP-----------YLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQSTERSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCCNYTHCNGGPVLDLQSFPPNGFQCYSCEGNNTLGCSSEEASLINCRGPMNQCLVATGL-----RSYTVRGCATASWCQGSHVADSFPTHLNVSVSCCHGSGCNSPT 274
                                    10        20        30        40        50        60        70        80|        -  |    100       110       120       130       140       150       160       170       180       190       200       210       220     |   - |     240       250       260       270    
                                                                                                           81          93                                                                                                                                  226   232

Chain V from PDB  Type:PROTEIN  Length:260
 aligned with UPAR_MOUSE | P35456 from UniProtKB/Swiss-Prot  Length:327

    Alignment length:274
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293    
           UPAR_MOUSE    24 LQCMQCESNQSCLVEECALGQDLCRTTVLREWQDDRELEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCNRPRPGARGRAFPQGRYLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQSTERSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCCNYTHCNGGPVLDLQSFPPNGFQCYSCEGNNTLGCSSEEASLINCRGPMNQCLVATGLDVLGNRSYTVRGCATASWCQGSHVADSFPTHLNVSVSCCHGSGCNSPT 297
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------           ---------------------------------------------------------------------------------------------------UPAR_LY6-3laqV01 V:192-271                                                      --- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------           ---------------------------------------------------------------------------------------------------UPAR_LY6-3laqV02 V:192-271                                                      --- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------           ---------------------------------------------------------------------------------------------------UPAR_LY6-3laqV03 V:192-271                                                      --- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------           ---------------------------------------------------------------------------------------------------UPAR_LY6-3laqV04 V:192-271                                                      --- Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------------           ---------------------------------------------------------------------------------------------------UPAR_LY6-3laqV05 V:192-271                                                      --- Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------------           ---------------------------------------------------------------------------------------------------UPAR_LY6-3laqV06 V:192-271                                                      --- Pfam domains (6)
         Sec.struct. author .eeee.......eeee.......eeeeeee........eeeeeee.......eeeeeee..eeeeeeeeee..........-----------..ee..ee.hhh.........ee......eeeeeeee...........eeeeeee.....eeeeee....eeeeeee.................eeeeeee................eeeee....eeeeeee...---..eeeeeee.........hhhhh.......eee.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -LY6_UPAR  PDB: V:2-45 UniProt: 25-68        -------------------------------------------------LY6_UPAR  PDB: V:95-145 UniProt: 118-168           ---------------------------------------------LY6_UPAR  PDB: V:191-245 UniProt: 214-268              ----------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3laq V   1 LQCMQCESNQSCLVEECALGQDLCRTTVLREWQDDRELEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCNRPRP-----------YLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQSTERSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCCNYTHCNGGPVLDLQSFPPNGFQCYSCEGNNTLGCSSEEASLINCRGPMNQCLVATGLDV---RSYTVRGCATASWCQGSHVADSFPTHLNVSVSCCHGSGCNSPT 274
                                    10        20        30        40        50        60        70        80|        -  |    100       110       120       130       140       150       160       170       180       190       200       210       220       | - |     240       250       260       270    
                                                                                                           81          93                                                                                                                                    228 232

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3LAQ)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Plasminogen Kringle 4 (42)

Homologous Superfamily: Plasminogen Kringle 4 (42)

Mouse (Mus musculus) (1)

1a	3laqA02	A:51-132
1b	3laqB02	B:51-132

Architecture: Ribbon (789)

Topology: Laminin (270)

Homologous Superfamily: Laminin (263)

Mouse (Mus musculus) (6)

2a	3laqB01	B:8-50
2b	3laqA01	A:9-50

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Kringle] (26)

Family: Kringle (26)

Mus musculus (Mouse) (2)

1a	Kringle-3laqB01	B:51-132
1b	Kringle-3laqB02	B:51-132

Clan: uPAR_Ly6_toxin (18)

Family: UPAR_LY6 (6)

Mus musculus (Mouse) (1)

2a	UPAR_LY6-3laqV01	V:192-271
2b	UPAR_LY6-3laqV02	V:192-271
2c	UPAR_LY6-3laqV03	V:192-271
2d	UPAR_LY6-3laqV04	V:192-271
2e	UPAR_LY6-3laqV05	V:192-271
2f	UPAR_LY6-3laqV06	V:192-271

Asymmetric Unit(hide GO term definitions)

Chain A,B (UROK_MOUSE | P06869)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0001525	angiogenesis	Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
	GO:0071498	cellular response to fluid shear stress	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fluid shear stress stimulus. Fluid shear stress is the force acting on an object in a system where the fluid is moving across a solid surface.
	GO:0071333	cellular response to glucose stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
	GO:0035729	cellular response to hepatocyte growth factor stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hepatocyte growth factor stimulus.
	GO:0071456	cellular response to hypoxia	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
	GO:0071222	cellular response to lipopolysaccharide	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
	GO:0071310	cellular response to organic substance	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
	GO:0072734	cellular response to staurosporine	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a staurosporine stimulus.
	GO:0007566	embryo implantation	Attachment of the blastocyst to the uterine lining.
	GO:0042730	fibrinolysis	A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
	GO:0070997	neuron death	The process of cell death in a neuron.
	GO:0030335	positive regulation of cell migration	Any process that activates or increases the frequency, rate or extent of cell migration.
	GO:0008284	positive regulation of cell proliferation	Any process that activates or increases the rate or extent of cell proliferation.
	GO:0060279	positive regulation of ovulation	Any process that activates or increases the frequency, rate or extent of ovulation, the release of a mature ovum/oocyte from an ovary.
	GO:2000379	positive regulation of reactive oxygen species metabolic process	Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process.
	GO:0014911	positive regulation of smooth muscle cell migration	Any process that activates, maintains or increases the frequency, rate or extent of smooth muscle cell migration.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0033628	regulation of cell adhesion mediated by integrin	Any process that modulates the frequency, rate, or extent of cell adhesion mediated by integrin.
	GO:0042127	regulation of cell proliferation	Any process that modulates the frequency, rate or extent of cell proliferation.
	GO:2000345	regulation of hepatocyte proliferation	Any process that modulates the frequency, rate or extent of hepatocyte proliferation.
	GO:0010469	regulation of receptor activity	Any process that modulates the frequency, rate or extent of receptor activity. Receptor activity is when a molecule combines with an extracellular or intracellular messenger to initiate a change in cell activity.
	GO:0014910	regulation of smooth muscle cell migration	Any process that modulates the frequency, rate or extent of smooth muscle cell migration.
	GO:2000097	regulation of smooth muscle cell-matrix adhesion	Any process that modulates the frequency, rate or extent of smooth muscle cell-matrix adhesion.
	GO:0014823	response to activity	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus.
	GO:0035728	response to hepatocyte growth factor	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hepatocyte growth factor stimulus.
	GO:0055093	response to hyperoxia	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating increased oxygen tension.
	GO:0001666	response to hypoxia	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
	GO:0043403	skeletal muscle tissue regeneration	The regrowth of skeletal muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.
	GO:0014909	smooth muscle cell migration	The orderly movement of a smooth muscle cell from one site to another, often during the development of a multicellular organism.
	GO:0007283	spermatogenesis	The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
	GO:0042060	wound healing	The series of events that restore integrity to a damaged tissue, following an injury.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain U,V (UPAR_MOUSE | P35456)

molecular function
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019904	protein domain specific binding	Interacting selectively and non-covalently with a specific domain of a protein.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0030377	urokinase plasminogen activator receptor activity	Combining with the urokinase plasminogen activator to initiate a change in cell activity.
biological process
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:2001268	negative regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway	Any process that stops, prevents or reduces the frequency, rate or extent of cysteine-type endopeptidase activity involved in apoptotic signaling pathway.
	GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway.
	GO:0043388	positive regulation of DNA binding	Any process that increases the frequency, rate or extent of DNA binding. DNA binding is any process in which a gene product interacts selectively with DNA (deoxyribonucleic acid).
	GO:0045742	positive regulation of epidermal growth factor receptor signaling pathway	Any process that activates or increases the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.
	GO:0001934	positive regulation of protein phosphorylation	Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
	GO:0090200	positive regulation of release of cytochrome c from mitochondria	Any process that increases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
	GO:0030162	regulation of proteolysis	Any process that modulates the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein.
	GO:0038195	urokinase plasminogen activator signaling pathway	A series of molecular signals initiated by the binding of urokinase plasminogen activator to a receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
	GO:0031225	anchored component of membrane	The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	3laq
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	UPAR_MOUSE \| P35456
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	UROK_MOUSE \| P06869
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	3.4.21.73
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	UPAR_MOUSE \| P35456
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	UROK_MOUSE \| P06869
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	UROK_MOUSE \| P06869	:	5lhn 5lhp 5lhq 5lhr 5lhs

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 10)

Sites (10, 10)

SS Bonds (40, 40)

Cis Peptide Bonds (0, 0)

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Related Entries

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Related Entries Specified in the PDB File