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3LAQ
Biol. Unit 2
Info
Asym.Unit (131 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
STRUCTURE-BASED ENGINEERING OF SPECIES SELECTIVITY IN THE UPA-UPAR INTERACTION
Authors
:
M. Huang
Date
:
06 Jan 10 (Deposition) - 02 Feb 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,U,V
Biol. Unit 1: A,U (1x)
Biol. Unit 2: B,V (1x)
Keywords
:
Upa, Upar, Atf, Supar, Smupar, Matf, Disulfide Bond, Egf-Like Domain, Hydrolase, Kringle, Plasminogen Activation, Protease, Secreted, Serine Protease, Zymogen, Cell Membrane, Glycoprotein, Gpi-Anchor, Lipoprotein, Membrane, Receptor, Hydrolase-Hydrolase Receptor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. Lin, H. Gardsvoll, Q. Huai, M. Huang, M. Ploug
Structure-Based Engineering Of Species Selectivity In The Interaction Between Urokinase And Its Receptor: Implication For Preclinical Cancer Therapy.
J. Biol. Chem. V. 285 10982 2010
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
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No.
Name
Count
Type
Full Name
1
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
ASN V:52 , THR V:69 , NAG V:1053
BINDING SITE FOR RESIDUE NAG V 1052
2
AC7
SOFTWARE
NAG V:1052
BINDING SITE FOR RESIDUE NAG V 1053
3
AC8
SOFTWARE
HIS B:53 , CYS B:132 , ASN V:170
BINDING SITE FOR RESIDUE NAG V 1170
4
AC9
SOFTWARE
ASN V:160 , GLN V:161
BINDING SITE FOR RESIDUE NAG V 1160
5
BC1
SOFTWARE
LEU V:258 , ASN V:259
BINDING SITE FOR RESIDUE NAG V 1259
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(5, 7)
Info
All PROSITE Patterns/Profiles
1: LY6_UPAR (V:191-245)
2: EGF_3 (B:8-44)
3: EGF_1 (B:32-43)
4: KRINGLE_2 (B:50-132)
5: KRINGLE_1 (B:102-114)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LY6_UPAR
PS00983
Ly-6 / u-PAR domain signature.
UPAR_MOUSE
25-68
118-168
214-268
3
-
V:2-45
-
V:95-145
-
V:191-245
2
EGF_3
PS50026
EGF-like domain profile.
UROK_MOUSE
28-64
1
B:8-44
3
EGF_1
PS00022
EGF-like domain signature 1.
UROK_MOUSE
52-63
1
-
B:32-43
4
KRINGLE_2
PS50070
Kringle domain profile.
UROK_MOUSE
70-152
1
-
B:50-132
5
KRINGLE_1
PS00021
Kringle domain signature.
UROK_MOUSE
122-134
1
-
B:102-114
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3laqA02 (A:51-132)
1b: CATH_3laqB02 (B:51-132)
2a: CATH_3laqB01 (B:8-50)
2b: CATH_3laqA01 (A:9-50)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Plasminogen Kringle 4
(42)
Homologous Superfamily
:
Plasminogen Kringle 4
(42)
Mouse (Mus musculus)
(1)
1a
3laqA02
A:51-132
1b
3laqB02
B:51-132
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Mouse (Mus musculus)
(6)
2a
3laqB01
B:8-50
2b
3laqA01
A:9-50
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Kringle_3laqB01 (B:51-132)
1b: PFAM_Kringle_3laqB02 (B:51-132)
2a: PFAM_UPAR_LY6_3laqV01 (V:192-271)
2b: PFAM_UPAR_LY6_3laqV02 (V:192-271)
2c: PFAM_UPAR_LY6_3laqV03 (V:192-271)
2d: PFAM_UPAR_LY6_3laqV04 (V:192-271)
2e: PFAM_UPAR_LY6_3laqV05 (V:192-271)
2f: PFAM_UPAR_LY6_3laqV06 (V:192-271)
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Clans
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(
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: Kringle]
(26)
Family
:
Kringle
(26)
Mus musculus (Mouse)
(2)
1a
Kringle-3laqB01
B:51-132
1b
Kringle-3laqB02
B:51-132
Clan
:
uPAR_Ly6_toxin
(18)
Family
:
UPAR_LY6
(6)
Mus musculus (Mouse)
(1)
2a
UPAR_LY6-3laqV01
V:192-271
2b
UPAR_LY6-3laqV02
V:192-271
2c
UPAR_LY6-3laqV03
V:192-271
2d
UPAR_LY6-3laqV04
V:192-271
2e
UPAR_LY6-3laqV05
V:192-271
2f
UPAR_LY6-3laqV06
V:192-271
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Asymmetric Unit 1
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Asym.Unit (131 KB)
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