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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TRIMERIC AUTOTRANSPORTER ADHESIN HEAD DOMAIN BPAA FROM BURKHOLDERIA PSEUDOMALLEI, IODIDE PHASED
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  06 Jan 10  (Deposition) - 12 May 10  (Release) - 12 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Niaid, Seattle Structural Genomics Center For Infectious Disease, Autotransporter, Iodide Phased, Collagen Binding, Melioidosis, Ssgcid, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. E. Edwards, I. Phan, J. Abendroth, S. H. Dieterich, A. Masoudi, W. Guo, S. N. Hewitt, A. Kelley, D. Leibly, M. J. Brittnacher, B. L. Staker, S. I. Miller, W. C. Van Voorhis, P. J. Myler, L. J. Stewart
Structure Of A Burkholderia Pseudomallei Trimeric Autotransporter Adhesin Head.
Plos One V. 5 12803 2010
PubMed-ID: 20862217  |  Reference-DOI: 10.1371/JOURNAL.PONE.0012803

(-) Compounds

Molecule 1 - HAEMAGLUTTININ FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: AVA0421
    Gene: BURPS1710B_A0459, XADA
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 320372
    Strain: 1710B

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1IOD9Ligand/IonIODIDE ION
Biological Unit 1 (1, 27)
No.NameCountTypeFull Name
1IOD27Ligand/IonIODIDE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:5 , SER A:9 , THR A:53BINDING SITE FOR RESIDUE IOD A 180
2AC2SOFTWARETHR A:15 , HOH A:255BINDING SITE FOR RESIDUE IOD A 181
3AC3SOFTWAREALA A:49 , HOH A:251 , HOH A:311BINDING SITE FOR RESIDUE IOD A 182
4AC4SOFTWARELYS A:72 , ASP A:82 , HOH A:284BINDING SITE FOR RESIDUE IOD A 183
5AC5SOFTWAREASN A:17 , THR A:86BINDING SITE FOR RESIDUE IOD A 184
6AC6SOFTWARESER A:109BINDING SITE FOR RESIDUE IOD A 185
7AC7SOFTWAREHOH A:290BINDING SITE FOR RESIDUE IOD A 186
8AC8SOFTWAREILE A:160BINDING SITE FOR RESIDUE IOD A 187
9AC9SOFTWARETHR A:176BINDING SITE FOR RESIDUE IOD A 188

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LA9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LA9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LA9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LA9)

(-) Exons   (0, 0)

(no "Exon" information available for 3LA9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
 aligned with Q3JLD6_BURP1 | Q3JLD6 from UniProtKB/TrEMBL  Length:2757

    Alignment length:173
                                  2290      2300      2310      2320      2330      2340      2350      2360      2370      2380      2390      2400      2410      2420      2430      2440      2450   
        Q3JLD6_BURP1   2281 STSISSITTNTTNLGNSTAAALGGGATYDPATGAISAPSYTTYNANGTTATNTSVGAAIDNINANGIKYFHANSTDPDSVATGTNSVAIGPNAVANVDYSVAIGSGATTSAAVPVASASVGGLTFGGFAGSAPIGVFSVGAPGAERQITNVAAGRISAASTDAVNGSQLYATN 2453
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------HIM-3la9A01 A:150-173   ---- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh................eeee.....eeee.hhhhhhhhhhhhh.............ee.....eee....ee.....eee...............------............ee..........................hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3la9 A    5 STSISSITTNTTNLGNSTAAALGGGATYDPATGAISAPSYTTYNANGTTATNTSVGAAIDNINANGIKYFHANSTDPDSVATGTNSVAIGPNAVANVDYSVAIGSGATTSAAVPVASA------FGGFAGSAPIGVFSVGAPGAERQITNVAAGRISAASTDAVNGSQLYATN  177
                                    14        24        34        44        54        64        74        84        94       104       114       | -    |  134       144       154       164       174   
                                                                                                                                               122    129
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LA9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LA9)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: HIM] (4)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q3JLD6_BURP1 | Q3JLD6)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3JLD6_BURP1 | Q3JLD6: 3laa

(-) Related Entries Specified in the PDB File

3laa HIGH RESOLUTION NATIVE RELATED ID: BUPSA.01663.A RELATED DB: TARGETDB