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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN ADENOVIRUS TYPE 21 FIBER KNOB
 
Authors :  K. Cupelli, M. Jost, B. D. Persson, T. Stehle
Date :  30 Dec 09  (Deposition) - 14 Apr 10  (Release) - 14 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  Adenovirus, Fiber Knob, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Cupelli, S. Muller, B. D. Persson, M. Jost, N. Arnberg, T. Stehle
Structure Of Adenovirus Type 21 Knob In Complex With Cd46 Reveals Key Differences In Receptor Contacts Among Species B Adenoviruses.
J. Virol. V. 84 3189 2010
PubMed-ID: 20071571  |  Reference-DOI: 10.1128/JVI.01964-09

(-) Compounds

Molecule 1 - FIBER PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: ROSETTA2 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: AD21 FIBER KNOB (UNP RESIDUES 123-323)
    Gene: 32608, L5
    Organism Scientific: HUMAN ADENOVIRUS 21
    Organism Taxid: 32608
    Strain: 2145

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric Unit (3, 17)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3NA11Ligand/IonSODIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3NA-1Ligand/IonSODIUM ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
3NA-1Ligand/IonSODIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
3NA-1Ligand/IonSODIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
3NA-1Ligand/IonSODIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:199 , ASN B:203 , LEU B:204BINDING SITE FOR RESIDUE NA B 1
02AC2SOFTWARELEU C:134 , GLY C:202 , ASN C:203 , LEU C:204 , PRO C:214 , LEU C:215 , SER C:230BINDING SITE FOR RESIDUE GOL C 2
03AC3SOFTWAREGOL E:6 , LEU E:215 , LYS E:216 , ASN E:217 , SER E:230BINDING SITE FOR RESIDUE GOL E 5
04AC4SOFTWAREGOL E:5 , GLY E:202 , ASN E:203 , LEU E:204 , PRO E:214 , LEU E:215 , SER E:230BINDING SITE FOR RESIDUE GOL E 6
05AC5SOFTWAREGLU F:299 , SER F:300 , PRO F:301 , GLU F:302 , SER F:303BINDING SITE FOR RESIDUE GOL F 3
06AC6SOFTWAREASP F:179 , ASN F:182BINDING SITE FOR RESIDUE NA F 2
07AC7SOFTWARETHR F:261 , ASP F:264BINDING SITE FOR RESIDUE NA F 7
08AC8SOFTWARETHR H:206 , ASP H:207BINDING SITE FOR RESIDUE NA H 6
09AC9SOFTWAREVAL I:177 , ASP I:179 , ASN I:182BINDING SITE FOR RESIDUE NA I 11
10BC1SOFTWARETHR J:206 , ASP J:207BINDING SITE FOR RESIDUE NA J 8
11BC2SOFTWAREASN J:149BINDING SITE FOR RESIDUE NA J 9
12BC3SOFTWAREILE J:131 , ASN J:132 , THR J:133 , LYS J:218BINDING SITE FOR RESIDUE CL J 1
13BC4SOFTWARELYS J:231 , ASN L:304BINDING SITE FOR RESIDUE CL J 2
14BC5SOFTWARENA K:5BINDING SITE FOR RESIDUE NA K 4
15BC6SOFTWARENA K:4BINDING SITE FOR RESIDUE NA K 5
16BC7SOFTWAREVAL L:181 , ASN L:182 , PHE L:185BINDING SITE FOR RESIDUE NA L 10

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3L88)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3L88)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3L88)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3L88)

(-) Exons   (0, 0)

(no "Exon" information available for 3L88)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88a_ A: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88A00 A:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...--------.hhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 A 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS--------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220      229                                                                                            


Chain B from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88b_ B: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88B00 B:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...--------hhhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 B 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS--------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220      229                                                                                            


Chain C from PDB  Type:PROTEIN  Length:184
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88c_ C: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88C00 C:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...-------..hhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee................eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 C 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS-------TSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220     228                                                                                             


Chain D from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88d_ D: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88D00 D:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...--------hhhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 D 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS--------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220      229                                                                                            


Chain E from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88e_ E: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88E00 E:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...--------hhhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 E 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS--------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220      229                                                                                            


Chain F from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88f_ F: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88F00 F:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...--------hhhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee................eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 F 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS--------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220      229                                                                                            


Chain G from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88g_ G: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88G00 G:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...--------hhhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee................eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 G 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS--------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220      229                                                                                            


Chain H from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319  
         Q2KS96_9ADEN   130 SINTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88h_ H: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 3l88H00 H:130-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...---------hhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3l88 H 130 SINTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS---------SKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   139       149       159       169       179       189       199       209       219|        -|      239       249       259       269       279       289       299       309       319  
                                                                                                                    220       230                                                                                           


Chain I from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88i_ I: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88I00 I:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...--------hhhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 I 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS--------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220      229                                                                                            


Chain J from PDB  Type:PROTEIN  Length:182
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88j_ J: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88J00 J:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee..---------.hhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 J 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKS---------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210        |-       230       240       250       260       270       280       290       300       310       320 
                                                                                                                  219       229                                                                                            


Chain K from PDB  Type:PROTEIN  Length:183
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:191
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
         Q2KS96_9ADEN   131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88k_ K: automated matches                                                                                                                                                                    SCOP domains
               CATH domains 3l88K00 K:131-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee...--------.hhhhh............hhhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l88 K 131 INTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSS--------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320 
                                                                                                                   220      229                                                                                            


Chain L from PDB  Type:PROTEIN  Length:182
 aligned with Q2KS96_9ADEN | Q2KS96 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319  
         Q2KS96_9ADEN   130 SINTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNKSSTATSEAATSSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
               SCOP domains d3l88l_ L: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 3l88L00 L:130-321 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                      CATH domains
           Pfam domains (1) ----Adeno_knob-3l88L01 L:134-317                                                                                                                                                            ---- Pfam domains (1)
           Pfam domains (2) ----Adeno_knob-3l88L02 L:134-317                                                                                                                                                            ---- Pfam domains (2)
           Pfam domains (3) ----Adeno_knob-3l88L03 L:134-317                                                                                                                                                            ---- Pfam domains (3)
           Pfam domains (4) ----Adeno_knob-3l88L04 L:134-317                                                                                                                                                            ---- Pfam domains (4)
           Pfam domains (5) ----Adeno_knob-3l88L05 L:134-317                                                                                                                                                            ---- Pfam domains (5)
           Pfam domains (6) ----Adeno_knob-3l88L06 L:134-317                                                                                                                                                            ---- Pfam domains (6)
           Pfam domains (7) ----Adeno_knob-3l88L07 L:134-317                                                                                                                                                            ---- Pfam domains (7)
           Pfam domains (8) ----Adeno_knob-3l88L08 L:134-317                                                                                                                                                            ---- Pfam domains (8)
           Pfam domains (9) ----Adeno_knob-3l88L09 L:134-317                                                                                                                                                            ---- Pfam domains (9)
          Pfam domains (10) ----Adeno_knob-3l88L10 L:134-317                                                                                                                                                            ---- Pfam domains (10)
          Pfam domains (11) ----Adeno_knob-3l88L11 L:134-317                                                                                                                                                            ---- Pfam domains (11)
          Pfam domains (12) ----Adeno_knob-3l88L12 L:134-317                                                                                                                                                            ---- Pfam domains (12)
         Sec.struct. author ...eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee.----------.hhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee............eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3l88 L 130 SINTLWTGIKPPPNCQIVENTDTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKSATIQLRLYFDSSGNLLTDESNLKIPLKNK----------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLVPLNISIMLNSRTISSNVAYAIQFEWNLNAKESPESNIATLTTSPFFFSYIRED 321
                                   139       149       159       169       179       189       199       209        |-       229       239       249       259       269       279       289       299       309       319  
                                                                                                                  218        229
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 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: Reo_sigma (16)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q2KS96_9ADEN | Q2KS96)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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  3l88
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  Q2KS96_9ADEN | Q2KS96
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2KS96_9ADEN | Q2KS96: 3l89

(-) Related Entries Specified in the PDB File

2qlk ADENOVIRUS AD35 FIBER HEAD
3bq4 CRYSTAL STRUCTURE OF AD35 FIBER KNOB
3exv CRYSTAL STRUCTURE OF THE HUMAN ADENOVIRUS TYPE 11 FIBER KNOB
3l89