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(-) Description

Title :  ADENOVIRUS AD35 FIBRE HEAD
 
Authors :  Y. -C. Liaw, I. Amiraslanov, H. Wang, A. Lieber
Date :  13 Jul 07  (Deposition) - 19 Feb 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.02
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Adenovirus, Ad35, Fibre, Cd46-Bindning, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Wang, Y. C. Liaw, D. Stone, O. Kalyuzhniy, I. Amiraslanov, S. Tuve, C. L. Verlinde, D. Shayakhmetov, T. Stehle, S. Roffler, A. Lieber
Identification Of Cd46 Binding Sites Within The Adenovirus Serotype 35 Fiber Knob
J. Virol. V. 81 12785 2007
PubMed-ID: 17898059  |  Reference-DOI: 10.1128/JVI.01732-07

(-) Compounds

Molecule 1 - FIBER
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PQE30
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: HEAD DOMAIN RESIDUES 123-323
    Organism Scientific: HUMAN ADENOVIRUS 35
    Organism Taxid: 10522
    Strain: AD35
    Synonym: PIV

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:144 , ILE A:146 , PRO A:202 , PHE A:203 , PHE A:204 , HOH A:310 , HOH A:317BINDING SITE FOR RESIDUE GOL A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QLK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QLK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QLK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QLK)

(-) Exons   (0, 0)

(no "Exon" information available for 2QLK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
 aligned with Q67733_ADE35 | Q67733 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319  
         Q67733_ADE35   130 SINTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITED 321
               SCOP domains d2qlka_ A: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 2qlkA00 A:20-211 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                       CATH domains
               Pfam domains ----Adeno_knob-2qlkA01 A:24-207                                                                                                                                                             ---- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee..---------hhhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee................eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qlk A  20 SINTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKS---------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITED 211
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209  
                                                                                                                   109       119                                                                                            


Chain A from PDB  Type:PROTEIN  Length:183
 aligned with Q7T925_ADE35 | Q7T925 from UniProtKB/TrEMBL  Length:323

    Alignment length:192
                                   139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319  
         Q7T925_ADE35   130 SINTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKSSTATSETVASSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITED 321
               SCOP domains d2qlka_ A: automated matches                                                                                                                                                                     SCOP domains
               CATH domains 2qlkA00 A:20-211 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                       CATH domains
               Pfam domains ----Adeno_knob-2qlkA01 A:24-207                                                                                                                                                             ---- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee..---------hhhhhh.............hhh.eeeeeeeee......eeeeeeeeee..........eeeeeeeeee................eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qlk A  20 SINTLWTGINPPPNCQIVENTNTNDGKLTLVLVKNGGLVNGYVSLVGVSDTVNQMFTQKTANIQLRLYFDSSGNLLTEESDLKIPLKNKS---------SSKAFMPSTTAYPFNTTTRDSENYIHGICYYMTSYDRSLFPLNISIMLNSRMISSNVAYAIQFEWNLNASESPESNIATLTTSPFFFSYITED 211
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209  
                                                                                                                   109       119
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Reo_sigma (16)

(-) Gene Ontology  (5, 10)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q67733_ADE35 | Q67733)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

Chain A   (Q7T925_ADE35 | Q7T925)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.

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  2qlk
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  Q7T925_ADE35 | Q7T925
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q7T925_ADE35 | Q7T925: 3bq4

(-) Related Entries Specified in the PDB File

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