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(-) Description

Title :  STRUCTURAL BASIS OF THE ACTIVITY AND SUBSTRATE SPECIFICITY OF THE FLUOROACETYL-COA THIESTERASE FLK - WILD TYPE FLK IN COMPLEX WITH FACCPAN
 
Authors :  M. V. B. Dias, F. Huang, D. Y. Chirgadze, M. Tosin, D Spiteller, E. F. Val P. F. Leadlay, J. B. Spencer, T. L. Blundell
Date :  30 Nov 09  (Deposition) - 28 Apr 10  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Fluoroacetyl-Coa Thioesterase Flk, Thioesterase, Hot-Dog Folding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. V. Dias, F. Huang, D. Y. Chirgadze, M. Tosin, D. Spiteller, E. F. Dry, P. F. Leadlay, J. B. Spencer, T. L. Blundell
Structural Basis For The Activity And Substrate Specificity Of Fluoroacetyl-Coa Thioesterase Flk.
J. Biol. Chem. V. 285 22495 2010
PubMed-ID: 20430898  |  Reference-DOI: 10.1074/JBC.M110.107177

(-) Compounds

Molecule 1 - FLUOROACETYL-COA THIOESTERASE FLK
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: FLK
    Gene: FLK, FLUOROACETYL-COA THIOESTERASE FLK
    Organism Scientific: STREPTOMYCES CATTLEYA
    Organism Taxid: 29303

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ENV2Ligand/Ion(2R)-N-{3-[(5-FLUORO-4-OXOPENTYL)AMINO]-3-OXOPROPYL}-2,4-DIHYDROXY-3,3-DIMETHYLBUTANAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ENV1Ligand/Ion(2R)-N-{3-[(5-FLUORO-4-OXOPENTYL)AMINO]-3-OXOPROPYL}-2,4-DIHYDROXY-3,3-DIMETHYLBUTANAMIDE
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ENV-1Ligand/Ion(2R)-N-{3-[(5-FLUORO-4-OXOPENTYL)AMINO]-3-OXOPROPYL}-2,4-DIHYDROXY-3,3-DIMETHYLBUTANAMIDE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1ENV1Ligand/Ion(2R)-N-{3-[(5-FLUORO-4-OXOPENTYL)AMINO]-3-OXOPROPYL}-2,4-DIHYDROXY-3,3-DIMETHYLBUTANAMIDE
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ENV-1Ligand/Ion(2R)-N-{3-[(5-FLUORO-4-OXOPENTYL)AMINO]-3-OXOPROPYL}-2,4-DIHYDROXY-3,3-DIMETHYLBUTANAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:50 , LEU A:68 , GLY A:69 , HOH A:166 , VAL B:23 , LEU B:26 , VAL B:39 , ALA B:41 , THR B:42 , GLY B:43 , HIS B:76 , ALA B:79BINDING SITE FOR RESIDUE ENV B 201
2AC2SOFTWAREGLU E:50 , LEU E:68 , GLY E:69 , HOH E:348 , HOH E:689 , VAL F:23 , LEU F:26 , PHE F:33 , VAL F:39 , ALA F:41 , THR F:42 , GLY F:43BINDING SITE FOR RESIDUE ENV E 202

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:73 -B:73
2C:73 -D:73
3E:73 -F:73
4G:73 -H:73

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KVZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KVZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KVZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3KVZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeee...eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvz A   5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   


Chain B from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvz B   5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   


Chain C from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh..hhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvz C   5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   


Chain D from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvz D   5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   


Chain E from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeee....eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvz E   5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   


Chain F from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvz F   5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   


Chain G from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvz G   5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   


Chain H from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kvz H   5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    14        24        34        44        54        64        74        84        94       104       114       124       134
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KVZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KVZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KVZ)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (FLK_STRCT | Q1EMV2)
molecular function
    GO:0016289    CoA hydrolase activity    Catalysis of the reaction: X-CoA + H2O = X + CoA; X may be any group.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  3kvz
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLK_STRCT | Q1EMV2: 3kuv 3kuw 3kv7 3kv8 3kvi 3kvu 3kw1 3kx7 3kx8 3p2q 3p2r 3p2s 3p3f 3p3i

(-) Related Entries Specified in the PDB File

3kuv 3kuw 3kv7 3kv8 3kvi 3kvu 3kw1 3kx7 3kx8