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(-) Description

Title :  STRUCTURAL BASIS OF THE ACTIVITY AND SUBSTRATE SPECIFICITY OF THE FLUOROACETYL-COA THIOESTERASE FLK
 
Authors :  D. Y. Chirgadze, M. V. B. Dias, F Huang, M. Tosin, D Spiteller, E. F. Val P. F. Leadlay, J. B. Spencer, T. L. Blundell
Date :  02 Dec 09  (Deposition) - 28 Apr 10  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Fluoroacetyl-Coa Thioesterase Flk, Thioesterase, Hot-Dog Folding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. V. Dias, F. Huang, D. Y. Chirgadze, M. Tosin, D. Spiteller, E. F. Dry, P. F. Leadlay, J. B. Spencer, T. L. Blundell
Structural Basis For The Activity And Substrate Specificity Of Fluoroacetyl-Coa Thioesterase Flk.
J. Biol. Chem. V. 285 22495 2010
PubMed-ID: 20430898  |  Reference-DOI: 10.1074/JBC.M110.107177

(-) Compounds

Molecule 1 - FLUOROACETYL-COA THIOESTERASE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: FLK
    Gene: FLK, FLUOROACETYL-COA THIOESTERASE FLK
    Organism Scientific: STREPTOMYCES CATTLEYA
    Organism Taxid: 29303

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 31)

Asymmetric Unit (1, 31)
No.NameCountTypeFull Name
1MSE31Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3KX8)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:73 -B:73
2C:73 -D:73
3E:73 -F:73
4G:73 -H:73

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu H:96 -Gly H:97

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KX8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KX8)

(-) Exons   (0, 0)

(no "Exon" information available for 3KX8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kx8 A   5 mRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFmVGLmEWACVRAmAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                            |       14        24        34        44|   |   54  |     64        74        84        94       104       114       124       134   
                            |                                      45-MSE      57-MSE                                                                            
                            5-MSE                                      49-MSE                                                                                    


Chain B from PDB  Type:PROTEIN  Length:135
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:135
                                    12        22        32        42        52        62        72        82        92       102       112       122       132     
            FLK_STRCT     3 DGMRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kx8 B   3 DGmRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFmVGLmEWACVRAmAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                              |     12        22        32        42  |   | 52    |   62        72        82        92       102       112       122       132     
                              5-MSE                                  45-MSE      57-MSE                                                                            
                                                                         49-MSE                                                                                    


Chain C from PDB  Type:PROTEIN  Length:132
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:132
                                    15        25        35        45        55        65        75        85        95       105       115       125       135  
            FLK_STRCT     6 RVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee........eeeeeeeeeee...eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kx8 C   6 RVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFmVGLmEWACVRAmAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                                    15        25        35        45   |    55 |      65        75        85        95       105       115       125       135  
                                                                  45-MSE      57-MSE                                                                            
                                                                      49-MSE                                                                                    


Chain D from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kx8 D   5 mRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFmVGLmEWACVRAmAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                            |       14        24        34        44|   |   54  |     64        74        84        94       104       114       124       134   
                            5-MSE                                  45-MSE      57-MSE                                                                            
                                                                       49-MSE                                                                                    


Chain E from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee........eeeeeeeeeee...eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kx8 E   5 mRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFmVGLmEWACVRAmAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                            |       14        24        34        44|   |   54  |     64        74        84        94       104       114       124       134   
                            5-MSE                                  45-MSE      57-MSE                                                                            
                                                                       49-MSE                                                                                    


Chain F from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kx8 F   5 mRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFmVGLmEWACVRAmAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                            |       14        24        34        44|   |   54  |     64        74        84        94       104       114       124       134   
                            5-MSE                                  45-MSE      57-MSE                                                                            
                                                                       49-MSE                                                                                    


Chain G from PDB  Type:PROTEIN  Length:133
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
            FLK_STRCT     5 MRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeeee..eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kx8 G   5 mRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFmVGLmEWACVRAmAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                            |       14        24        34        44|   |   54  |     64        74        84        94       104       114       124       134   
                            5-MSE                                  45-MSE      57-MSE                                                                            
                                                                       49-MSE                                                                                    


Chain H from PDB  Type:PROTEIN  Length:134
 aligned with FLK_STRCT | Q1EMV2 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:134
                                    13        23        33        43        53        63        73        83        93       103       113       123       133    
            FLK_STRCT     4 GMRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFMVGLMEWACVRAMAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeeeeeeeeee...eeeeeeeee....eeeeeeeeeeeeehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kx8 H   4 GmRVGERFTHDFVVPPHKTVRHLYPESPEFAEFPEVFATGFmVGLmEWACVRAmAPYLEPGEGSLGTAICVTHTAATPPGLTVTVTAELRSVEGRRLSWRVSAHDGVDEIGSGTHERAVIHLEKFNAKVRQKTP 137
                             |      13        23        33        43 |   |  53   |    63        73        83        93       103       113       123       133    
                             5-MSE                                  45-MSE      57-MSE                                                                            
                                                                        49-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KX8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KX8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KX8)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (FLK_STRCT | Q1EMV2)
molecular function
    GO:0016289    CoA hydrolase activity    Catalysis of the reaction: X-CoA + H2O = X + CoA; X may be any group.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLK_STRCT | Q1EMV2: 3kuv 3kuw 3kv7 3kv8 3kvi 3kvu 3kvz 3kw1 3kx7 3p2q 3p2r 3p2s 3p3f 3p3i

(-) Related Entries Specified in the PDB File

3kuv 3kuw 3kv7 3kv8 3kvi 3kvu 3kvz 3kw1 3kx7