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(-) Description

Title :  CRYSTAL STRUCTURE OF HELICOBACTER PYLORI MINE, A CELL DIVISION TOPOLOGICAL SPECIFICITY FACTOR
 
Authors :  G. B. Kang, H. E. Song, M. K. Kim, S. H. Eom
Date :  26 Nov 09  (Deposition) - 05 May 10  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Helicobacter Pylori, Mine, Cell Division, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. B. Kang, H. E. Song, M. K. Kim, H. S. Youn, J. G. Lee, J. Y. An, J. S. Chun, H. Jeon, S. H. Eom
Crystal Structure Of Helicobacter Pylori Mine, A Cell Division Topological Specificity Factor
Mol. Microbiol. V. 76 1222 2010
PubMed-ID: 20398219  |  Reference-DOI: 10.1111/J.1365-2958.2010.07160.X

(-) Compounds

Molecule 1 - CELL DIVISION TOPOLOGICAL SPECIFICITY FACTOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MINE
    Organism Common: CAMPYLOBACTER PYLORI
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210
    Synonym: MINE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3KU7)

(-) Sites  (0, 0)

(no "Site" information available for 3KU7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KU7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KU7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KU7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KU7)

(-) Exons   (0, 0)

(no "Exon" information available for 3KU7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:61
 aligned with MINE_HELPY | O25099 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:64
                                    22        32        42        52        62        72    
            MINE_HELPY   13 AATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILP 76
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee......hhhhhhhhhhhhhhhhhh..eeeee..---..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  3ku7 A 13 AATATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTL---QSVETIEVEIILP 76
                                    22        32        42        52       | - |      72    
                                                                          60  64            


Chain B from PDB  Type:PROTEIN  Length:58
 aligned with MINE_HELPY | O25099 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:62
                                    25        35        45        55        65        75  
            MINE_HELPY   16 ATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTLDSNQSVETIEVEIILPR 77
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
           Pfam domains (1) MinE-3ku7B01 B:16-77                                           Pfam domains (1)
           Pfam domains (2) MinE-3ku7B02 B:16-77                                           Pfam domains (2)
         Sec.struct. author ...eeeeeeee..........hhhhhhhhhhhhhhh..eeeeeee----..eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                  3ku7 B 16 ATDRLKLILAKERTLNLPYMEEMRKEIIAVIQKYTKSSDIHFKTL----SVETIEVEIILPR 77
                                    25        35        45        55    |   65        75  
                                                                       60   65
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KU7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KU7)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: MinE] (2)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (MINE_HELPY | O25099)
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0032955    regulation of barrier septum assembly    Any process that modulates the frequency, rate or extent of barrier septum formation. Barrier septum formation is the assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MINE_HELPY | O25099: 3mcd

(-) Related Entries Specified in the PDB File

3mcd