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(-) Description

Title :  PENTAMERIC FORMATE CHANNEL WITH FORMATE BOUND
 
Authors :  A. B. Waight, D. N. Wang, New York Consortium On Membrane Protein Structure (Nycomps)
Date :  09 Nov 09  (Deposition) - 15 Dec 09  (Release) - 19 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Membrane Protein, Channel, Formate, Structural Genomics, Psi-2, Protein Structure Initiative, New York Consortium On Membrane Protein Structure, Nycomps (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. B. Waight, J. Love, D. N. Wang
Structure And Mechanism Of A Pentameric Formate Channel
Nat. Struct. Mol. Biol. V. 17 31 2010
PubMed-ID: 20010838  |  Reference-DOI: 10.1038/NSMB.1740
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE FORMATE TRANSPORTER 1
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: VC_1695
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 53)

Asymmetric/Biological Unit (2, 53)
No.NameCountTypeFull Name
1BOG14Ligand/IonB-OCTYLGLUCOSIDE
2FMT39Ligand/IonFORMIC ACID

(-) Sites  (50, 50)

Asymmetric Unit (50, 50)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:176 , TRP A:179 , TRP A:272 , LEU A:275 , SER B:39 , GLN B:43 , THR B:84BINDING SITE FOR RESIDUE BOG A 281
02AC2SOFTWARELEU A:72 , MET A:192 , ILE A:195 , FMT A:287 , ILE B:195 , BOG B:282BINDING SITE FOR RESIDUE BOG A 282
03AC3SOFTWARELYS A:32 , SER A:39 , THR A:84 , ALA A:232 , HOH A:338 , TRP E:179BINDING SITE FOR RESIDUE BOG A 283
04AC4SOFTWARETHR A:55 , THR A:66 , HOH A:330 , HOH A:333BINDING SITE FOR RESIDUE FMT A 284
05AC5SOFTWAREGLY A:57 , HIS A:59 , HOH A:328 , PRO E:62 , TYR E:63BINDING SITE FOR RESIDUE FMT A 285
06AC6SOFTWARELYS A:155 , HIS A:158 , GLY A:205 , GLU A:207 , FMT A:292 , HOH A:309BINDING SITE FOR RESIDUE FMT A 286
07AC7SOFTWAREBOG A:282 , BOG B:282 , MET D:192 , BOG D:281 , BOG E:281BINDING SITE FOR RESIDUE FMT A 287
08AC8SOFTWARETHR A:114BINDING SITE FOR RESIDUE FMT A 288
09AC9SOFTWAREGLU A:139 , ASP A:140 , HOH A:346BINDING SITE FOR RESIDUE FMT A 289
10BC1SOFTWAREARG A:185 , ARG B:185 , SER B:186BINDING SITE FOR RESIDUE FMT A 290
11BC2SOFTWAREPRO A:217 , HOH A:331BINDING SITE FOR RESIDUE FMT A 291
12BC3SOFTWARETYR A:51 , VAL A:202 , FMT A:286 , HOH A:317 , HOH A:335BINDING SITE FOR RESIDUE FMT A 292
13BC4SOFTWAREPHE B:160 , HOH B:342 , GLU D:228 , ALA D:232BINDING SITE FOR RESIDUE BOG B 281
14BC5SOFTWAREBOG A:282 , FMT A:287 , LEU B:69 , MET B:192 , ILE B:195 , HOH B:351 , BOG C:281 , BOG E:281BINDING SITE FOR RESIDUE BOG B 282
15BC6SOFTWARELYS B:223 , TYR B:224 , LEU B:244 , ASN B:245 , PHE B:246 , VAL B:247 , HIS C:157 , ALA C:239 , ASP C:243 , ASN C:248BINDING SITE FOR RESIDUE BOG B 283
16BC7SOFTWARETYR B:224 , PHE B:225 , HOH B:347 , TYR C:224 , ASN C:245 , BOG C:282 , FMT C:287BINDING SITE FOR RESIDUE BOG B 284
17BC8SOFTWAREVAL B:82 , THR B:181 , PHE B:182 , ALA B:184 , ARG B:185 , SER B:186 , LEU B:187 , LYS B:190BINDING SITE FOR RESIDUE BOG B 285
18BC9SOFTWAREHIS B:157 , ALA B:242 , ASP B:243 , ASN B:245 , ASN B:248 , FMT B:292 , HOH B:335 , HIS C:157 , HIS C:158 , ASN C:252BINDING SITE FOR RESIDUE BOG B 286
19CC1SOFTWARESER A:204 , GLY A:205 , HOH A:306 , GLU B:139BINDING SITE FOR RESIDUE FMT B 287
20CC2SOFTWAREALA B:58 , MET B:61 , THR B:66BINDING SITE FOR RESIDUE FMT B 288
21CC3SOFTWARETHR A:159 , ARG B:135 , HOH B:318BINDING SITE FOR RESIDUE FMT B 289
22CC4SOFTWAREMET B:138 , MET B:233 , HOH B:344BINDING SITE FOR RESIDUE FMT B 290
23CC5SOFTWARESER B:183 , SER C:186 , LEU C:187BINDING SITE FOR RESIDUE FMT B 291
24CC6SOFTWAREALA B:239 , GLN B:240 , ALA B:242 , ASP B:243 , BOG B:286BINDING SITE FOR RESIDUE FMT B 292
25CC7SOFTWAREPHE B:89 , TRP B:113BINDING SITE FOR RESIDUE FMT B 293
26CC8SOFTWARETYR B:51 , LYS B:155 , VAL B:202 , HOH B:349BINDING SITE FOR RESIDUE FMT B 294
27CC9SOFTWAREBOG B:282 , MET C:192 , ILE C:195 , LEU C:196 , ILE D:195 , BOG D:281BINDING SITE FOR RESIDUE BOG C 281
28DC1SOFTWAREBOG B:284 , VAL C:128 , PHE C:129 , TYR C:224 , PHE C:246BINDING SITE FOR RESIDUE BOG C 282
29DC2SOFTWARETHR B:159 , LEU B:161 , ALA C:133 , ARG C:135BINDING SITE FOR RESIDUE FMT C 283
30DC3SOFTWARETYR C:117BINDING SITE FOR RESIDUE FMT C 284
31DC4SOFTWAREPHE C:129BINDING SITE FOR RESIDUE FMT C 285
32DC5SOFTWAREARG C:185 , ALA D:184 , LYS D:190 , FMT D:283 , FMT D:286BINDING SITE FOR RESIDUE FMT C 286
33DC6SOFTWAREBOG B:284 , LYS C:223 , TYR C:224 , ALA C:242 , HOH C:324BINDING SITE FOR RESIDUE FMT C 287
34DC7SOFTWARESER C:39BINDING SITE FOR RESIDUE FMT C 288
35DC8SOFTWAREFMT A:287 , BOG C:281 , MET D:192 , LEU D:196 , LEU E:72 , ILE E:195 , BOG E:281BINDING SITE FOR RESIDUE BOG D 281
36DC9SOFTWAREPHE D:89 , THR D:90 , SER D:91 , ASN D:171 , HIS D:208 , HOH D:318BINDING SITE FOR RESIDUE FMT D 282
37EC1SOFTWAREFMT C:286 , LEU D:187 , LYS D:190BINDING SITE FOR RESIDUE FMT D 283
38EC2SOFTWAREALA D:58 , MET D:61 , PRO D:62 , THR D:66BINDING SITE FOR RESIDUE FMT D 284
39EC3SOFTWARETHR D:159 , PHE D:160 , LEU D:161 , HOH D:315BINDING SITE FOR RESIDUE FMT D 285
40EC4SOFTWAREFMT C:286 , THR D:181 , PHE D:182 , ALA D:184 , LYS D:190BINDING SITE FOR RESIDUE FMT D 286
41EC5SOFTWARESER D:39BINDING SITE FOR RESIDUE FMT D 288
42EC6SOFTWAREVAL E:81 , GLY E:86 , GLU E:87 , LEU E:88 , THR E:90 , SER E:91 , SER E:92 , LEU E:96 , VAL E:178 , FMT E:312BINDING SITE FOR RESIDUE BOG E 310
43EC7SOFTWARELEU E:88 , PHE E:89 , ASN E:171 , HIS E:208 , FMT E:312BINDING SITE FOR RESIDUE FMT E 311
44EC8SOFTWARELEU E:88 , PHE E:89 , THR E:90 , ASN E:171 , BOG E:310 , FMT E:311BINDING SITE FOR RESIDUE FMT E 312
45EC9SOFTWAREFMT A:287 , BOG B:282 , HOH B:351 , BOG D:281 , LEU E:69 , MET E:192 , LEU E:196BINDING SITE FOR RESIDUE BOG E 281
46FC1SOFTWAREHIS E:154 , HIS E:157 , HOH E:317BINDING SITE FOR RESIDUE FMT E 282
47FC2SOFTWAREILE E:151 , HIS E:154 , LYS E:155 , FMT E:286 , HOH E:295 , HOH E:307BINDING SITE FOR RESIDUE FMT E 283
48FC3SOFTWARETRP E:113BINDING SITE FOR RESIDUE FMT E 284
49FC4SOFTWARETYR E:51 , VAL E:202 , FMT E:283 , HOH E:322BINDING SITE FOR RESIDUE FMT E 286
50FC5SOFTWARESER E:39BINDING SITE FOR RESIDUE FMT E 287

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KLZ)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Val A:97 -Ala A:98
2Ser A:101 -Gly A:102
3Gly A:102 -Lys A:103
4Ile A:104 -Ser A:105
5Lys D:103 -Ile D:104
6Ser D:105 -Trp D:106
7Leu E:278 -Lys E:279

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KLZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KLZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3KLZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:258
 aligned with Q9KRE7_VIBCH | Q9KRE7 from UniProtKB/TrEMBL  Length:280

    Alignment length:258
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270        
         Q9KRE7_VIBCH    21 TGEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYL 278
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3klzA00 A:21-278 Glycerol uptake facilitator protein.                                                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3klz A  21 TGEGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYL 278
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270        


Chain B from PDB  Type:PROTEIN  Length:256
 aligned with Q9KRE7_VIBCH | Q9KRE7 from UniProtKB/TrEMBL  Length:280

    Alignment length:256
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272      
         Q9KRE7_VIBCH    23 EGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYL 278
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3klzB00 B:23-278 Glycerol uptake facilitator protein.                                                                                                                                                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3klz B  23 EGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYL 278
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272      


Chain C from PDB  Type:PROTEIN  Length:255
 aligned with Q9KRE7_VIBCH | Q9KRE7 from UniProtKB/TrEMBL  Length:280

    Alignment length:255
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274     
         Q9KRE7_VIBCH    25 KAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK 279
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3klzC00 C:25-279 Glycerol uptake facilitator protein.                                                                                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3klz C  25 KAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK 279
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274     


Chain D from PDB  Type:PROTEIN  Length:255
 aligned with Q9KRE7_VIBCH | Q9KRE7 from UniProtKB/TrEMBL  Length:280

    Alignment length:255
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274     
         Q9KRE7_VIBCH    25 KAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK 279
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3klzD00 D:25-279 Glycerol uptake facilitator protein.                                                                                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3klz D  25 KAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK 279
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274     


Chain E from PDB  Type:PROTEIN  Length:257
 aligned with Q9KRE7_VIBCH | Q9KRE7 from UniProtKB/TrEMBL  Length:280

    Alignment length:257
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       
         Q9KRE7_VIBCH    23 EGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK 279
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3klzE00 E:23-279 Glycerol uptake facilitator protein.                                                                                                                                                                                                             CATH domains
           Pfam domains (1) Form_Nir_trans-3klzE01 E:23-277                                                                                                                                                                                                                                -- Pfam domains (1)
           Pfam domains (2) Form_Nir_trans-3klzE02 E:23-277                                                                                                                                                                                                                                -- Pfam domains (2)
           Pfam domains (3) Form_Nir_trans-3klzE03 E:23-277                                                                                                                                                                                                                                -- Pfam domains (3)
           Pfam domains (4) Form_Nir_trans-3klzE04 E:23-277                                                                                                                                                                                                                                -- Pfam domains (4)
           Pfam domains (5) Form_Nir_trans-3klzE05 E:23-277                                                                                                                                                                                                                                -- Pfam domains (5)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3klz E  23 EGKAKKAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVLILVAKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSARSLTDKVMVLILPVAMFVSSGFEHCIANMFQVPMAIGIKYFAPESFWAMTGANIAQYADLNFVNFIVNNLIPVTLGNIVGGGVFVGMWYWLIYLK 279
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KLZ)

(-) CATH Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Form_Nir_trans] (3)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E   (Q9KRE7_VIBCH | Q9KRE7)
molecular function
    GO:0015499    formate transmembrane transporter activity    Enables the transfer of formate from one side of the membrane to the other. Formate is also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.
    GO:0015513    nitrite uptake transmembrane transporter activity    Enables the transfer of nitrite from the outside of a cell to the inside of the cell across a membrane.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0015724    formate transport    The directed movement of formate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015707    nitrite transport    The directed movement of nitrite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
    Gly A:102 - Lys A:103   [ RasMol ]  
    Ile A:104 - Ser A:105   [ RasMol ]  
    Leu E:278 - Lys E:279   [ RasMol ]  
    Lys D:103 - Ile D:104   [ RasMol ]  
    Ser A:101 - Gly A:102   [ RasMol ]  
    Ser D:105 - Trp D:106   [ RasMol ]  
    Val A:97 - Ala A:98   [ RasMol ]  
 

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        Q9KRE7_VIBCH | Q9KRE7: 3kly

(-) Related Entries Specified in the PDB File

3kly RELATED ID: GO.190 RELATED DB: TARGETDB