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3KLZ
Asym. Unit
Info
Asym.Unit (442 KB)
Biol.Unit 1 (426 KB)
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(1)
Title
:
PENTAMERIC FORMATE CHANNEL WITH FORMATE BOUND
Authors
:
A. B. Waight, D. N. Wang, New York Consortium On Membrane Protein Structure (Nycomps)
Date
:
09 Nov 09 (Deposition) - 15 Dec 09 (Release) - 19 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Membrane Protein, Channel, Formate, Structural Genomics, Psi-2, Protein Structure Initiative, New York Consortium On Membrane Protein Structure, Nycomps
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. B. Waight, J. Love, D. N. Wang
Structure And Mechanism Of A Pentameric Formate Channel
Nat. Struct. Mol. Biol. V. 17 31 2010
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 53)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
1d: B-OCTYLGLUCOSIDE (BOGd)
1e: B-OCTYLGLUCOSIDE (BOGe)
1f: B-OCTYLGLUCOSIDE (BOGf)
1g: B-OCTYLGLUCOSIDE (BOGg)
1h: B-OCTYLGLUCOSIDE (BOGh)
1i: B-OCTYLGLUCOSIDE (BOGi)
1j: B-OCTYLGLUCOSIDE (BOGj)
1k: B-OCTYLGLUCOSIDE (BOGk)
1l: B-OCTYLGLUCOSIDE (BOGl)
1m: B-OCTYLGLUCOSIDE (BOGm)
1n: B-OCTYLGLUCOSIDE (BOGn)
2a: FORMIC ACID (FMTa)
2aa: FORMIC ACID (FMTaa)
2ab: FORMIC ACID (FMTab)
2ac: FORMIC ACID (FMTac)
2ad: FORMIC ACID (FMTad)
2ae: FORMIC ACID (FMTae)
2af: FORMIC ACID (FMTaf)
2ag: FORMIC ACID (FMTag)
2ah: FORMIC ACID (FMTah)
2ai: FORMIC ACID (FMTai)
2aj: FORMIC ACID (FMTaj)
2ak: FORMIC ACID (FMTak)
2al: FORMIC ACID (FMTal)
2am: FORMIC ACID (FMTam)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
2f: FORMIC ACID (FMTf)
2g: FORMIC ACID (FMTg)
2h: FORMIC ACID (FMTh)
2i: FORMIC ACID (FMTi)
2j: FORMIC ACID (FMTj)
2k: FORMIC ACID (FMTk)
2l: FORMIC ACID (FMTl)
2m: FORMIC ACID (FMTm)
2n: FORMIC ACID (FMTn)
2o: FORMIC ACID (FMTo)
2p: FORMIC ACID (FMTp)
2q: FORMIC ACID (FMTq)
2r: FORMIC ACID (FMTr)
2s: FORMIC ACID (FMTs)
2t: FORMIC ACID (FMTt)
2u: FORMIC ACID (FMTu)
2v: FORMIC ACID (FMTv)
2w: FORMIC ACID (FMTw)
2x: FORMIC ACID (FMTx)
2y: FORMIC ACID (FMTy)
2z: FORMIC ACID (FMTz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
14
Ligand/Ion
B-OCTYLGLUCOSIDE
2
FMT
39
Ligand/Ion
FORMIC ACID
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:176 , TRP A:179 , TRP A:272 , LEU A:275 , SER B:39 , GLN B:43 , THR B:84
BINDING SITE FOR RESIDUE BOG A 281
02
AC2
SOFTWARE
LEU A:72 , MET A:192 , ILE A:195 , FMT A:287 , ILE B:195 , BOG B:282
BINDING SITE FOR RESIDUE BOG A 282
03
AC3
SOFTWARE
LYS A:32 , SER A:39 , THR A:84 , ALA A:232 , HOH A:338 , TRP E:179
BINDING SITE FOR RESIDUE BOG A 283
04
AC4
SOFTWARE
THR A:55 , THR A:66 , HOH A:330 , HOH A:333
BINDING SITE FOR RESIDUE FMT A 284
05
AC5
SOFTWARE
GLY A:57 , HIS A:59 , HOH A:328 , PRO E:62 , TYR E:63
BINDING SITE FOR RESIDUE FMT A 285
06
AC6
SOFTWARE
LYS A:155 , HIS A:158 , GLY A:205 , GLU A:207 , FMT A:292 , HOH A:309
BINDING SITE FOR RESIDUE FMT A 286
07
AC7
SOFTWARE
BOG A:282 , BOG B:282 , MET D:192 , BOG D:281 , BOG E:281
BINDING SITE FOR RESIDUE FMT A 287
08
AC8
SOFTWARE
THR A:114
BINDING SITE FOR RESIDUE FMT A 288
09
AC9
SOFTWARE
GLU A:139 , ASP A:140 , HOH A:346
BINDING SITE FOR RESIDUE FMT A 289
10
BC1
SOFTWARE
ARG A:185 , ARG B:185 , SER B:186
BINDING SITE FOR RESIDUE FMT A 290
11
BC2
SOFTWARE
PRO A:217 , HOH A:331
BINDING SITE FOR RESIDUE FMT A 291
12
BC3
SOFTWARE
TYR A:51 , VAL A:202 , FMT A:286 , HOH A:317 , HOH A:335
BINDING SITE FOR RESIDUE FMT A 292
13
BC4
SOFTWARE
PHE B:160 , HOH B:342 , GLU D:228 , ALA D:232
BINDING SITE FOR RESIDUE BOG B 281
14
BC5
SOFTWARE
BOG A:282 , FMT A:287 , LEU B:69 , MET B:192 , ILE B:195 , HOH B:351 , BOG C:281 , BOG E:281
BINDING SITE FOR RESIDUE BOG B 282
15
BC6
SOFTWARE
LYS B:223 , TYR B:224 , LEU B:244 , ASN B:245 , PHE B:246 , VAL B:247 , HIS C:157 , ALA C:239 , ASP C:243 , ASN C:248
BINDING SITE FOR RESIDUE BOG B 283
16
BC7
SOFTWARE
TYR B:224 , PHE B:225 , HOH B:347 , TYR C:224 , ASN C:245 , BOG C:282 , FMT C:287
BINDING SITE FOR RESIDUE BOG B 284
17
BC8
SOFTWARE
VAL B:82 , THR B:181 , PHE B:182 , ALA B:184 , ARG B:185 , SER B:186 , LEU B:187 , LYS B:190
BINDING SITE FOR RESIDUE BOG B 285
18
BC9
SOFTWARE
HIS B:157 , ALA B:242 , ASP B:243 , ASN B:245 , ASN B:248 , FMT B:292 , HOH B:335 , HIS C:157 , HIS C:158 , ASN C:252
BINDING SITE FOR RESIDUE BOG B 286
19
CC1
SOFTWARE
SER A:204 , GLY A:205 , HOH A:306 , GLU B:139
BINDING SITE FOR RESIDUE FMT B 287
20
CC2
SOFTWARE
ALA B:58 , MET B:61 , THR B:66
BINDING SITE FOR RESIDUE FMT B 288
21
CC3
SOFTWARE
THR A:159 , ARG B:135 , HOH B:318
BINDING SITE FOR RESIDUE FMT B 289
22
CC4
SOFTWARE
MET B:138 , MET B:233 , HOH B:344
BINDING SITE FOR RESIDUE FMT B 290
23
CC5
SOFTWARE
SER B:183 , SER C:186 , LEU C:187
BINDING SITE FOR RESIDUE FMT B 291
24
CC6
SOFTWARE
ALA B:239 , GLN B:240 , ALA B:242 , ASP B:243 , BOG B:286
BINDING SITE FOR RESIDUE FMT B 292
25
CC7
SOFTWARE
PHE B:89 , TRP B:113
BINDING SITE FOR RESIDUE FMT B 293
26
CC8
SOFTWARE
TYR B:51 , LYS B:155 , VAL B:202 , HOH B:349
BINDING SITE FOR RESIDUE FMT B 294
27
CC9
SOFTWARE
BOG B:282 , MET C:192 , ILE C:195 , LEU C:196 , ILE D:195 , BOG D:281
BINDING SITE FOR RESIDUE BOG C 281
28
DC1
SOFTWARE
BOG B:284 , VAL C:128 , PHE C:129 , TYR C:224 , PHE C:246
BINDING SITE FOR RESIDUE BOG C 282
29
DC2
SOFTWARE
THR B:159 , LEU B:161 , ALA C:133 , ARG C:135
BINDING SITE FOR RESIDUE FMT C 283
30
DC3
SOFTWARE
TYR C:117
BINDING SITE FOR RESIDUE FMT C 284
31
DC4
SOFTWARE
PHE C:129
BINDING SITE FOR RESIDUE FMT C 285
32
DC5
SOFTWARE
ARG C:185 , ALA D:184 , LYS D:190 , FMT D:283 , FMT D:286
BINDING SITE FOR RESIDUE FMT C 286
33
DC6
SOFTWARE
BOG B:284 , LYS C:223 , TYR C:224 , ALA C:242 , HOH C:324
BINDING SITE FOR RESIDUE FMT C 287
34
DC7
SOFTWARE
SER C:39
BINDING SITE FOR RESIDUE FMT C 288
35
DC8
SOFTWARE
FMT A:287 , BOG C:281 , MET D:192 , LEU D:196 , LEU E:72 , ILE E:195 , BOG E:281
BINDING SITE FOR RESIDUE BOG D 281
36
DC9
SOFTWARE
PHE D:89 , THR D:90 , SER D:91 , ASN D:171 , HIS D:208 , HOH D:318
BINDING SITE FOR RESIDUE FMT D 282
37
EC1
SOFTWARE
FMT C:286 , LEU D:187 , LYS D:190
BINDING SITE FOR RESIDUE FMT D 283
38
EC2
SOFTWARE
ALA D:58 , MET D:61 , PRO D:62 , THR D:66
BINDING SITE FOR RESIDUE FMT D 284
39
EC3
SOFTWARE
THR D:159 , PHE D:160 , LEU D:161 , HOH D:315
BINDING SITE FOR RESIDUE FMT D 285
40
EC4
SOFTWARE
FMT C:286 , THR D:181 , PHE D:182 , ALA D:184 , LYS D:190
BINDING SITE FOR RESIDUE FMT D 286
41
EC5
SOFTWARE
SER D:39
BINDING SITE FOR RESIDUE FMT D 288
42
EC6
SOFTWARE
VAL E:81 , GLY E:86 , GLU E:87 , LEU E:88 , THR E:90 , SER E:91 , SER E:92 , LEU E:96 , VAL E:178 , FMT E:312
BINDING SITE FOR RESIDUE BOG E 310
43
EC7
SOFTWARE
LEU E:88 , PHE E:89 , ASN E:171 , HIS E:208 , FMT E:312
BINDING SITE FOR RESIDUE FMT E 311
44
EC8
SOFTWARE
LEU E:88 , PHE E:89 , THR E:90 , ASN E:171 , BOG E:310 , FMT E:311
BINDING SITE FOR RESIDUE FMT E 312
45
EC9
SOFTWARE
FMT A:287 , BOG B:282 , HOH B:351 , BOG D:281 , LEU E:69 , MET E:192 , LEU E:196
BINDING SITE FOR RESIDUE BOG E 281
46
FC1
SOFTWARE
HIS E:154 , HIS E:157 , HOH E:317
BINDING SITE FOR RESIDUE FMT E 282
47
FC2
SOFTWARE
ILE E:151 , HIS E:154 , LYS E:155 , FMT E:286 , HOH E:295 , HOH E:307
BINDING SITE FOR RESIDUE FMT E 283
48
FC3
SOFTWARE
TRP E:113
BINDING SITE FOR RESIDUE FMT E 284
49
FC4
SOFTWARE
TYR E:51 , VAL E:202 , FMT E:283 , HOH E:322
BINDING SITE FOR RESIDUE FMT E 286
50
FC5
SOFTWARE
SER E:39
BINDING SITE FOR RESIDUE FMT E 287
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_3klzC00 (C:25-279)
1b: CATH_3klzD00 (D:25-279)
1c: CATH_3klzB00 (B:23-278)
1d: CATH_3klzE00 (E:23-279)
1e: CATH_3klzA00 (A:21-278)
View:
Select:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glycerol uptake facilitator protein
(37)
Homologous Superfamily
:
Glycerol uptake facilitator protein.
(37)
Vibrio cholerae. Organism_taxid: 666.
(2)
1a
3klzC00
C:25-279
1b
3klzD00
D:25-279
1c
3klzB00
B:23-278
1d
3klzE00
E:23-279
1e
3klzA00
A:21-278
[
close CATH info
]
Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Form_Nir_trans_3klzE01 (E:23-277)
1b: PFAM_Form_Nir_trans_3klzE02 (E:23-277)
1c: PFAM_Form_Nir_trans_3klzE03 (E:23-277)
1d: PFAM_Form_Nir_trans_3klzE04 (E:23-277)
1e: PFAM_Form_Nir_trans_3klzE05 (E:23-277)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Form_Nir_trans]
(3)
Family
:
Form_Nir_trans
(3)
Vibrio cholerae
(2)
1a
Form_Nir_trans-3klzE01
E:23-277
1b
Form_Nir_trans-3klzE02
E:23-277
1c
Form_Nir_trans-3klzE03
E:23-277
1d
Form_Nir_trans-3klzE04
E:23-277
1e
Form_Nir_trans-3klzE05
E:23-277
[
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]
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Asym.Unit (442 KB)
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