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(-) Description

Title :  CRYSTAL STRUCTURE OF A PDUO-TYPE ATP:COB(I)ALAMIN ADENOSYLTRANSFERASE FROM BACILLUS CEREUS
 
Authors :  A. K. Park, J. H. Moon, Y. M. Chi
Date :  23 Oct 09  (Deposition) - 20 Oct 10  (Release) - 20 Oct 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Helix Bundle, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Park, J. H. Moon, Y. M. Chi
Crystal Structure Of A Pduo-Type Atp:Cob(I)Alamin Adenosyltransferase From Bacillus Cereus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL CYTOSOLIC PROTEIN
    Chains: A, B, C
    EC Number: 2.5.1.17
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 226900
    Strain: ATCC 14579

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1DIO8Ligand/Ion1,4-DIETHYLENE DIOXIDE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:30 , PHE A:67 , GLY A:70 , GLY A:71 , DIO A:206BINDING SITE FOR RESIDUE DIO A 205
2AC2SOFTWARESER A:14 , VAL A:15 , DIO A:205BINDING SITE FOR RESIDUE DIO A 206
3AC3SOFTWAREASP B:34 , HOH B:357 , HOH B:605BINDING SITE FOR RESIDUE DIO B 201
4AC4SOFTWAREILE B:110 , PRO B:112 , ARG B:125 , PHE B:160 , HOH B:581 , PHE C:67BINDING SITE FOR RESIDUE DIO B 202
5AC5SOFTWARELEU B:106 , PHE B:109 , ILE B:110 , DIO B:204 , HOH B:581BINDING SITE FOR RESIDUE DIO B 203
6AC6SOFTWARELEU B:106 , ARG B:108 , PHE B:109 , DIO B:203BINDING SITE FOR RESIDUE DIO B 204
7AC7SOFTWAREHIS A:39 , ILE A:123 , HIS B:39 , TYR B:42 , THR B:120 , ILE B:123 , HOH B:544 , HIS C:39 , TYR C:42BINDING SITE FOR RESIDUE DIO B 207
8AC8SOFTWARELEU C:106 , GLU C:107 , ARG C:108BINDING SITE FOR RESIDUE DIO C 208

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KE4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KE4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KE4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KE4)

(-) Exons   (0, 0)

(no "Exon" information available for 3KE4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:172
 aligned with Q813T7_BACCR | Q813T7 from UniProtKB/TrEMBL  Length:193

    Alignment length:172
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  
         Q813T7_BACCR    11 GTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNRSAV 182
               SCOP domains d3ke4a_ A: automated matches                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ke4 A  11 GTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNRSAV 182
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  


Chain B from PDB  Type:PROTEIN  Length:168
 aligned with Q813T7_BACCR | Q813T7 from UniProtKB/TrEMBL  Length:193

    Alignment length:168
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170        
         Q813T7_BACCR    11 GTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYN 178
               SCOP domains d3ke4b_ B: automated matches                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ke4 B  11 GTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYN 178
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170        


Chain C from PDB  Type:PROTEIN  Length:169
 aligned with Q813T7_BACCR | Q813T7 from UniProtKB/TrEMBL  Length:193

    Alignment length:169
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
         Q813T7_BACCR    11 GTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNR 179
               SCOP domains d3ke4c_ C: automated matches                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Cob_adeno_trans-3ke4C01 C:11-167                                                                                                                             ------------ Pfam domains (1)
           Pfam domains (2) Cob_adeno_trans-3ke4C02 C:11-167                                                                                                                             ------------ Pfam domains (2)
           Pfam domains (3) Cob_adeno_trans-3ke4C03 C:11-167                                                                                                                             ------------ Pfam domains (3)
         Sec.struct. author .eeee..eeee..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ke4 C  11 GTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNR 179
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KE4)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Cob_adeno_trans] (11)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (Q813T7_BACCR | Q813T7)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

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        Q813T7_BACCR | Q813T7: 3ke5

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3ke5