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Title :   CRYSTAL STRUCTURE OF A PDUO-TYPE ATP:COB(I)ALAMIN ADENOSYLTRANSFERASE FROM BACILLUS CEREUS IN A COMPLEX WITH ATP

Authors :   A. K. Park, J. H. Moon, Y. M. Chi

Date :   23 Oct 09 (Deposition) - 20 Oct 10 (Release) - 20 Oct 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Helix Bundle, Mgatp Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Park, J. H. Moon, Y. M. Chi
Crystal Structure Of A Pduo-Type Atp:Cob(I)Alamin Adenosyltransferase From Bacillus Cereus In A Complex With Atp
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL CYTOSOLIC PROTEIN
	Chains	:	A, B, C
	EC Number	:	2.5.1.17
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET 28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	BACILLUS CEREUS
	Organism Taxid	:	226900
	Strain	:	ATCC 14579

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 6)

No.	Name	Count	Type	Full Name
1	ATP	3	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
2	MG	3	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:5 , LYS A:6 , GLY A:8 , THR A:13 , SER A:14 , LYS A:22 , VAL A:27 , HOH A:522 , HOH A:549 , HOH A:556 , ARG C:129 , GLU C:132 , ARG C:133 , ASN C:153 , ASP C:157 , MG C:206 , HOH C:520 , HOH C:521	BINDING SITE FOR RESIDUE ATP A 203
2	AC2	SOFTWARE	ASN A:153 , HOH A:510 , HOH A:511 , ATP B:201	BINDING SITE FOR RESIDUE MG A 204
3	AC3	SOFTWARE	ARG A:129 , GLU A:132 , ARG A:133 , ASN A:153 , ASP A:157 , MG A:204 , HOH A:510 , HOH A:512 , THR B:5 , LYS B:6 , GLY B:8 , THR B:13 , SER B:14 , LYS B:22 , VAL B:27 , GLY B:31 , HOH B:513 , HOH B:514	BINDING SITE FOR RESIDUE ATP B 201
4	AC4	SOFTWARE	ASN B:153 , HOH B:515 , HOH B:516 , ATP C:202	BINDING SITE FOR RESIDUE MG B 205
5	AC5	SOFTWARE	ARG B:129 , GLU B:132 , ARG B:133 , ASN B:153 , ASP B:157 , MG B:205 , HOH B:516 , HOH B:518 , THR C:5 , LYS C:6 , GLY C:8 , THR C:13 , SER C:14 , LYS C:22 , VAL C:27 , HOH C:517 , HOH C:593 , HOH C:598	BINDING SITE FOR RESIDUE ATP C 202
6	AC6	SOFTWARE	ATP A:203 , ASN C:153 , HOH C:519 , HOH C:520	BINDING SITE FOR RESIDUE MG C 206

(no "SS Bond" information available for 3KE5)

(no "Cis Peptide Bond" information available for 3KE5)

(no "SAP(SNP)/Variant" information available for 3KE5)

(no "PROSITE Motif" information available for 3KE5)

(no "Exon" information available for 3KE5)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:182
 aligned with Q813T7_BACCR | Q813T7 from UniProtKB/TrEMBL  Length:193

    Alignment length:182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  
         Q813T7_BACCR     1 MKLYTKTGDKGTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNRSAV 182
               SCOP domains d3ke5a_ A: automated matches                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeee..eeee..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ke5 A   1 MKLYTKTGDKGTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNRSAV 182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180

Chain B from PDB  Type:PROTEIN  Length:179
 aligned with Q813T7_BACCR | Q813T7 from UniProtKB/TrEMBL  Length:193

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
         Q813T7_BACCR     1 MKLYTKTGDKGTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNR 179
               SCOP domains d3ke5b_ B: automated matches                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeee..eeee..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ke5 B   1 MKLYTKTGDKGTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNR 179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain C from PDB  Type:PROTEIN  Length:179
 aligned with Q813T7_BACCR | Q813T7 from UniProtKB/TrEMBL  Length:193

    Alignment length:179
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172         
         Q813T7_BACCR     3 LYTKTGDKGTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNRSA 181
               SCOP domains d3ke5c_ C: automated matches                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Cob_adeno_trans-3ke5C01 C:3-167                                                                                                                                      -------------- Pfam domains (1)
           Pfam domains (2) Cob_adeno_trans-3ke5C02 C:3-167                                                                                                                                      -------------- Pfam domains (2)
           Pfam domains (3) Cob_adeno_trans-3ke5C03 C:3-167                                                                                                                                      -------------- Pfam domains (3)
         Sec.struct. author .........eeee..eeee..hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ke5 C   3 LYTKTGDKGTTSVIGGRVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGAFIDIYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVKINEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNRSA 181
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: Cobalamin adenosyltransferase-like (21)

Family: automated matches (17)

Protein domain: automated matches (17)

Bacillus cereus [TaxId: 226900] (2)

1a	d3ke5a_	A:
1b	d3ke5b_	B:
1c	d3ke5c_	C:

(no "CATH Domain" information available for 3KE5)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Cob_adeno_trans] (11)

Family: Cob_adeno_trans (11)

Bacillus cereus (strain ATCC 14579 / DSM 31) (2)

1a	Cob_adeno_trans-3ke5C01	C:3-167
1b	Cob_adeno_trans-3ke5C02	C:3-167
1c	Cob_adeno_trans-3ke5C03	C:3-167

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (Q813T7_BACCR | Q813T7)

molecular function
	GO:0005524		ATP binding		Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0000166		nucleotide binding		Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3ke5)

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	Q813T7_BACCR \| Q813T7	:	3ke4

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 3)

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Pfam Domains (1, 3)

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