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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ANKYRIN BINDING DOMAIN OF HUMAN ERYTHROID BETA SPECTRIN (REPEATS 13-15) IN COMPLEX WITH THE SPECTRIN BINDING DOMAIN OF HUMAN ERYTHROID ANKYRIN (ZU5-ANK)
 
Authors :  J. J. Ipsaro, A. Mondragon
Date :  20 Oct 09  (Deposition) - 02 Feb 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Complex, Spectrin, Spectrin Repeat, Three Helix Bundle, Ankyrin Binding, Disease Mutation, Structural Protein, Ankyrin, Zu5, Beta Sandwich, Spectrin Binding, Cytoskeleton, Membrane Skeleton, Actin Capping, Actin-Binding, Elliptocytosis, Hereditary Hemolytic Anemia, Phosphoprotein, Alternative Promoter Usage, Ank Repeat, Lipoprotein, Membrane, Sarcoplasmic Reticulum (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. J. Ipsaro, A. Mondragon
Structural Basis For Spectrin Recognition By Ankyrin.
Blood V. 115 4093 2010
PubMed-ID: 20101027  |  Reference-DOI: 10.1182/BLOOD-2009-11-255604

(-) Compounds

Molecule 1 - SPECTRIN BETA CHAIN, ERYTHROCYTE
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 1583-1906
    GeneSPTB, SPTB1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBETA-I SPECTRIN
 
Molecule 2 - ANKYRIN-1
    ChainsC, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPICANTE
    Expression System StrainER2566
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 911-1068
    GeneANK, ANK1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymERYTHROCYTE ANKYRIN, ANKYRIN-R

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A  D
Biological Unit 2 (1x) BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3KBT)

(-) Sites  (0, 0)

(no "Site" information available for 3KBT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KBT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly C:979 -Pro C:980
2Gly D:979 -Pro D:980

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 4)

Asymmetric Unit (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_026411V991LANK1_HUMANPolymorphism  ---C/DV991L
2UniProtVAR_054992I1054TANK1_HUMANDisease (SPH1)  ---C/DI1054T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_026411V991LANK1_HUMANPolymorphism  ---DV991L
2UniProtVAR_054992I1054TANK1_HUMANDisease (SPH1)  ---DI1054T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_026411V991LANK1_HUMANPolymorphism  ---CV991L
2UniProtVAR_054992I1054TANK1_HUMANDisease (SPH1)  ---CI1054T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZU5PS51145 ZU5 domain profile.ANK1_HUMAN913-1068
 
1070-1216
  2C:913-1068
D:913-1068
-
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZU5PS51145 ZU5 domain profile.ANK1_HUMAN913-1068
 
1070-1216
  1-
D:913-1068
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZU5PS51145 ZU5 domain profile.ANK1_HUMAN913-1068
 
1070-1216
  1C:913-1068
-
-

(-) Exons   (9, 18)

Asymmetric Unit (9, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003475282aENSE00001381881chr8:41655140-41655030111ANK1_HUMAN1-990--
1.4ENST000003475284ENSE00001252297chr8:41615655-41615554102ANK1_HUMAN10-43340--
1.5ENST000003475285ENSE00001252286chr8:41591587-4159148999ANK1_HUMAN44-76330--
1.6ENST000003475286ENSE00001252279chr8:41585524-4158542699ANK1_HUMAN77-109330--
1.7ENST000003475287ENSE00001252268chr8:41584866-4158476899ANK1_HUMAN110-142330--
1.8ENST000003475288ENSE00001252255chr8:41583464-41583279186ANK1_HUMAN143-204620--
1.9ENST000003475289ENSE00001252247chr8:41582072-4158197499ANK1_HUMAN205-237330--
1.10ENST0000034752810ENSE00001252241chr8:41581151-4158105399ANK1_HUMAN238-270330--
1.11ENST0000034752811ENSE00001252233chr8:41580741-4158064399ANK1_HUMAN271-303330--
1.12ENST0000034752812ENSE00001252224chr8:41577376-41577179198ANK1_HUMAN304-369660--
1.13ENST0000034752813ENSE00001252214chr8:41575722-4157562499ANK1_HUMAN370-402330--
1.14ENST0000034752814ENSE00001252205chr8:41575220-4157512299ANK1_HUMAN403-435330--
1.15ENST0000034752815ENSE00001252199chr8:41574569-4157447199ANK1_HUMAN436-468330--
1.16ENST0000034752816ENSE00000692080chr8:41573367-41573170198ANK1_HUMAN469-534660--
1.17ENST0000034752817ENSE00001252194chr8:41572592-4157249499ANK1_HUMAN535-567330--
1.18ENST0000034752818ENSE00001252187chr8:41571772-4157167499ANK1_HUMAN568-600330--
1.19ENST0000034752819ENSE00000532984chr8:41566493-41566296198ANK1_HUMAN601-666660--
1.20aENST0000034752820aENSE00000692050chr8:41563759-4156366199ANK1_HUMAN667-699330--
1.21ENST0000034752821ENSE00000692046chr8:41561990-4156189299ANK1_HUMAN700-732330--
1.22ENST0000034752822ENSE00000532987chr8:41561657-4156155999ANK1_HUMAN733-765330--
1.23ENST0000034752823ENSE00001252162chr8:41559662-4155957093ANK1_HUMAN766-796310--
1.24ENST0000034752824ENSE00001252155chr8:41559140-4155906873ANK1_HUMAN797-821250--
1.26ENST0000034752826ENSE00001252145chr8:41557066-4155697097ANK1_HUMAN821-853330--
1.27ENST0000034752827ENSE00001252137chr8:41555639-4155556179ANK1_HUMAN853-879270--
1.29ENST0000034752829ENSE00001252128chr8:41554291-4155419498ANK1_HUMAN880-912332C:910-912
D:910-912
3
3
1.30ENST0000034752830ENSE00001191945chr8:41554105-41553881225ANK1_HUMAN912-987762C:912-987
D:912-987
76
76
1.31ENST0000034752831ENSE00001252111chr8:41552849-41552695155ANK1_HUMAN987-1039532C:987-1039 (gaps)
D:987-1039 (gaps)
53
53
1.32aENST0000034752832aENSE00001252103chr8:41552321-41552110212ANK1_HUMAN1039-1109712C:1039-1068
D:1039-1068
30
30
1.33ENST0000034752833ENSE00000532996chr8:41551620-41551416205ANK1_HUMAN1110-1178690--
1.34ENST0000034752834ENSE00000692020chr8:41550719-4155062397ANK1_HUMAN1178-1210330--
1.35aENST0000034752835aENSE00000532998chr8:41550394-41550166229ANK1_HUMAN1210-1286770--
1.36ENST0000034752836ENSE00001252076chr8:41548117-41547992126ANK1_HUMAN1287-1328420--
1.37aENST0000034752837aENSE00001252070chr8:41547864-41547745120ANK1_HUMAN1329-1368400--
1.38ENST0000034752838ENSE00000692006chr8:41546107-4154602979ANK1_HUMAN1369-1395270--
1.39ENST0000034752839ENSE00000533002chr8:41545748-4154567475ANK1_HUMAN1395-1420260--
1.40ENST0000034752840ENSE00000691993chr8:41543801-41543670132ANK1_HUMAN1420-1464450--
1.41ENST0000034752841ENSE00000691972chr8:41542208-41542062147ANK1_HUMAN1464-1513500--
1.43bENST0000034752843bENSE00000691945chr8:41530430-41529872559ANK1_HUMAN1513-16991870--
1.44bENST0000034752844bENSE00000691941chr8:41526082-41525785298ANK1_HUMAN1699-17981000--
1.47ENST0000034752847ENSE00001252325chr8:41521260-4152117784ANK1_HUMAN1799-1826280--
1.48cENST0000034752848cENSE00001361299chr8:41519459-41519319141ANK1_HUMAN1827-1873470--
1.49eENST0000034752849eENSE00001851591chr8:41513272-415107392534ANK1_HUMAN1874-188180--

2.1ENST000003897211ENSE00002200989chr14:65289866-65289665202SPTB1_HUMAN1-50500--
2.2ENST000003897212ENSE00001692272chr14:65271808-65271657152SPTB1_HUMAN50-100510--
2.3ENST000003897213ENSE00001642694chr14:65270498-65270325174SPTB1_HUMAN101-158580--
2.4ENST000003897214ENSE00001647147chr14:65269035-6526894492SPTB1_HUMAN159-189310--
2.5ENST000003897215ENSE00001592915chr14:65268552-6526847281SPTB1_HUMAN189-216280--
2.6ENST000003897216ENSE00001601006chr14:65268118-65268003116SPTB1_HUMAN216-255400--
2.7ENST000003897217ENSE00001788289chr14:65267586-65267474113SPTB1_HUMAN255-292380--
2.8ENST000003897218ENSE00001643410chr14:65266652-65266465188SPTB1_HUMAN293-355630--
2.9ENST000003897219ENSE00001793364chr14:65264564-65264447118SPTB1_HUMAN355-394400--
2.10ENST0000038972110ENSE00001786358chr14:65263433-65263275159SPTB1_HUMAN395-447530--
2.11ENST0000038972111ENSE00001689221chr14:65262357-65262055303SPTB1_HUMAN448-5481010--
2.12ENST0000038972112ENSE00001643743chr14:65261335-65261185151SPTB1_HUMAN549-599510--
2.13ENST0000038972113ENSE00001699666chr14:65260585-65259715871SPTB1_HUMAN599-8892910--
2.14ENST0000038972114ENSE00001604309chr14:65258574-65258437138SPTB1_HUMAN889-935470--
2.15ENST0000038972115ENSE00001594267chr14:65253878-65253122757SPTB1_HUMAN935-11872530--
2.16ENST0000038972116ENSE00001597703chr14:65252669-65252467203SPTB1_HUMAN1188-1255680--
2.17ENST0000038972117ENSE00000392073chr14:65252345-6525225591SPTB1_HUMAN1255-1285310--
2.18ENST0000038972118ENSE00000867578chr14:65251111-65250965147SPTB1_HUMAN1286-1334490--
2.19ENST0000038972119ENSE00001506737chr14:65249271-65249008264SPTB1_HUMAN1335-1422880--
2.20ENST0000038972120ENSE00001506736chr14:65246649-65246443207SPTB1_HUMAN1423-1491690--
2.21ENST0000038972121ENSE00000902497chr14:65245964-6524587590SPTB1_HUMAN1492-1521300--
2.22ENST0000038972122ENSE00000658448chr14:65242121-65241843279SPTB1_HUMAN1522-1614932A:1585-1614
B:1587-1614
30
28
2.23ENST0000038972123ENSE00000392079chr14:65241245-65241115131SPTB1_HUMAN1615-1658442A:1615-1658
B:1615-1658
44
44
2.24ENST0000038972124ENSE00000867584chr14:65240142-65239938205SPTB1_HUMAN1658-1726692A:1658-1726
B:1658-1726
69
69
2.25ENST0000038972125ENSE00000867585chr14:65239672-65239298375SPTB1_HUMAN1727-18511252A:1727-1851 (gaps)
B:1727-1851 (gaps)
125
125
2.26ENST0000038972126ENSE00000902494chr14:65237847-65237603245SPTB1_HUMAN1852-1933822A:1852-1889
B:1852-1892
38
41
2.27ENST0000038972127ENSE00000902493chr14:65236446-65236308139SPTB1_HUMAN1933-1979470--
2.28ENST0000038972128ENSE00000392084chr14:65235836-6523575285SPTB1_HUMAN1980-2008290--
2.29ENST0000038972129ENSE00000867589chr14:65234577-65234381197SPTB1_HUMAN2008-2073660--
2.30ENST0000038972130ENSE00000658438chr14:65234070-6523402150SPTB1_HUMAN2074-2090170--
2.31cENST0000038972131cENSE00001506734chr14:65233519-65233148372SPTB1_HUMAN2090-2137480--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:284
 aligned with SPTB1_HUMAN | P11277 from UniProtKB/Swiss-Prot  Length:2137

    Alignment length:305
                                  1594      1604      1614      1624      1634      1644      1654      1664      1674      1684      1694      1704      1714      1724      1734      1744      1754      1764      1774      1784      1794      1804      1814      1824      1834      1844      1854      1864      1874      1884     
         SPTB1_HUMAN   1585 EAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALL 1889
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---------------------hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.22  PDB: A:1585-1614   Exon 2.23  PDB: A:1615-1658                 --------------------------------------------------------------------Exon 2.25  PDB: A:1727-1851 (gaps) UniProt: 1727-1851                                                                        Exon 2.26  PDB: A:1852-1889            Transcript 2 (1)
           Transcript 2 (2) -------------------------------------------------------------------------Exon 2.24  PDB: A:1658-1726 UniProt: 1658-1726                       ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 2 (2)
                3kbt A 1585 EAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRE---------------------FERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALL 1889
                                  1594      1604      1614      1624      1634      1644      1654      1664      1674      1684      1694      1704      1714      1724      1734      1744      1754      1764      1774      1784      1794      1804      1814    |    -         -      1844      1854      1864      1874      1884     
                                                                                                                                                                                                                                                                   1819                  1841                                                

Chain B from PDB  Type:PROTEIN  Length:294
 aligned with SPTB1_HUMAN | P11277 from UniProtKB/Swiss-Prot  Length:2137

    Alignment length:306
                                  1596      1606      1616      1626      1636      1646      1656      1666      1676      1686      1696      1706      1716      1726      1736      1746      1756      1766      1776      1786      1796      1806      1816      1826      1836      1846      1856      1866      1876      1886      
         SPTB1_HUMAN   1587 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDAC 1892
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Spectrin-3kbtB01 B:1797-1892                                                                     Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Spectrin-3kbtB02 B:1797-1892                                                                     Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Spectrin-3kbtB03 B:1797-1892                                                                     Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Spectrin-3kbtB04 B:1797-1892                                                                     Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Spectrin-3kbtB05 B:1797-1892                                                                     Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Spectrin-3kbtB06 B:1797-1892                                                                     Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........------------hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 2 (1) Exon 2.22  PDB: B:1587-1614 Exon 2.23  PDB: B:1615-1658                 --------------------------------------------------------------------Exon 2.25  PDB: B:1727-1851 (gaps) UniProt: 1727-1851                                                                        Exon 2.26  PDB: B:1852-1892 [INCOMPLETE]  Transcript 2 (1)
           Transcript 2 (2) -----------------------------------------------------------------------Exon 2.24  PDB: B:1658-1726 UniProt: 1658-1726                       ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 2 (2)
                3kbt B 1587 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLD------------AFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDAC 1892
                                  1596      1606      1616      1626      1636      1646      1656      1666      1676      1686      1696      1706      1716      1726      1736      1746      1756      1766      1776      1786      1796      1806      1816      1826|        -   |  1846      1856      1866      1876      1886      
                                                                                                                                                                                                                                                                         1827         1840                                                    

Chain C from PDB  Type:PROTEIN  Length:157
 aligned with ANK1_HUMAN | P16157 from UniProtKB/Swiss-Prot  Length:1881

    Alignment length:159
                                   919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059         
          ANK1_HUMAN    910 HTGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eeee....eeeee......eeee........eeeeeeeehhhhh..........ee...eeeee....eeeeeeeeeee..........eeeeeee......eee..--..hhhhhhh........hhhhhhhh.eeeeeeee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------L--------------------------------------------------------------T-------------- SAPs(SNPs)
                    PROSITE ---ZU5  PDB: C:913-1068 UniProt: 913-1068                                                                                                                       PROSITE
           Transcript 1 (1) 1.2--------------------------------------------------------------------------Exon 1.31  PDB: C:987-1039 (gaps) UniProt: 987-1039  ----------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.30  PDB: C:912-987 UniProt: 912-987                                  ---------------------------------------------------Exon 1.32a  PDB: C:1039-1068   Transcript 1 (2)
                3kbt C  910 ATGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRS--GESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
                                   919       929       939       949       959       969       979       989       999      1009      1019  |  |1029      1039      1049      1059         
                                                                                                                                         1022  |                                           
                                                                                                                                            1025                                           

Chain D from PDB  Type:PROTEIN  Length:151
 aligned with ANK1_HUMAN | P16157 from UniProtKB/Swiss-Prot  Length:1881

    Alignment length:159
                                   919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059         
          ANK1_HUMAN    910 HTGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -ZU5-3kbtD01 D:911-1015                                                                                   ------   -------------------------------------------- Pfam domains (1)
           Pfam domains (2) -ZU5-3kbtD02 D:911-1015                                                                                   ------   -------------------------------------------- Pfam domains (2)
         Sec.struct. author ......eeee....eeee.......eeee........eeeeeeeehhhhh..........ee...eeeee....eeeeeeeeeee...-----..eeeeeee......eee.---..hhhhhhh........hhhhhhhh.eeeeeeee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------L--------------------------------------------------------------T-------------- SAPs(SNPs)
                    PROSITE ---ZU5  PDB: D:913-1068 UniProt: 913-1068                                                                                                                       PROSITE
           Transcript 1 (1) 1.2--------------------------------------------------------------------------Exon 1.31  PDB: D:987-1039 (gaps) UniProt: 987-1039  ----------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.30  PDB: D:912-987 UniProt: 912-987                                  ---------------------------------------------------Exon 1.32a  PDB: D:1039-1068   Transcript 1 (2)
                3kbt D  910 ATGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFA-----DRELVVLRSENGSVWKEHR---GESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
                                   919       929       939       949       959       969       979       989       | -   |  1009      1019 |   |1029      1039      1049      1059         
                                                                                                                 997  1003              1021   |                                           
                                                                                                                                            1025                                           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KBT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KBT)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
1aSpectrin-3kbtB01B:1797-1892
1bSpectrin-3kbtB02B:1797-1892
1cSpectrin-3kbtB03B:1797-1892
1dSpectrin-3kbtB04B:1797-1892
1eSpectrin-3kbtB05B:1797-1892
1fSpectrin-3kbtB06B:1797-1892
(-)
Family: ZU5 (4)
2aZU5-3kbtD01D:911-1015
2bZU5-3kbtD02D:911-1015

(-) Gene Ontology  (44, 51)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (SPTB1_HUMAN | P11277)
molecular function
    GO:0005088    Ras guanyl-nucleotide exchange factor activity    Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Ras superfamily. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase.
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
    GO:0030506    ankyrin binding    Interacting selectively and non-covalently with ankyrin, a 200 kDa cytoskeletal protein that attaches other cytoskeletal proteins to integral membrane proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
biological process
    GO:0006888    ER to Golgi vesicle-mediated transport    The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
    GO:0000165    MAPK cascade    An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
    GO:0051693    actin filament capping    The binding of a protein or protein complex to the end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0031235    intrinsic component of the cytoplasmic side of the plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that have some covalently attached part (e.g. peptide sequence or GPI anchor) which is embedded in the cytoplasmic side of the plasma membrane only.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0008091    spectrin    Membrane associated dimeric protein (240 and 220 kDa) of erythrocytes. Forms a complex with ankyrin, actin and probably other components of the membrane cytoskeleton, so that there is a mesh of proteins underlying the plasma membrane, potentially restricting the lateral mobility of integral proteins.
    GO:0014731    spectrin-associated cytoskeleton    The part of the cytoskeleton composed of spectrin, protein 4.1 and ankyrin. Spectrin-associated cytoskeleton is associated with the plasma membrane.

Chain C,D   (ANK1_HUMAN | P16157)
molecular function
    GO:0051117    ATPase binding    Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP.
    GO:0008093    cytoskeletal adaptor activity    The binding activity of a molecule that brings together a cytoskeletal protein and one or more other molecules, permitting them to function in a coordinated way.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030507    spectrin binding    Interacting selectively and non-covalently with spectrin, a protein that is the major constituent of the erythrocyte cytoskeletal network. It associates with band 4.1 (see band protein) and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. It is composed of nonhomologous chains, alpha and beta, which aggregate side-to-side in an antiparallel fashion to form dimers, tetramers, and higher polymers.
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0006888    ER to Golgi vesicle-mediated transport    The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
    GO:0007010    cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
    GO:0006887    exocytosis    A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell.
    GO:0045199    maintenance of epithelial cell apical/basal polarity    The maintenance of the apicobasal polarity of an epithelial cell.
    GO:0010638    positive regulation of organelle organization    Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle.
    GO:0072661    protein targeting to plasma membrane    The process of directing proteins towards the plasma membrane; usually uses signals contained within the protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0031672    A band    The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line.
    GO:0031430    M band    The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines.
    GO:0030018    Z disc    Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
    GO:0030673    axolemma    The portion of the plasma membrane surrounding an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045211    postsynaptic membrane    A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane.
    GO:0042383    sarcolemma    The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers.
    GO:0016529    sarcoplasmic reticulum    A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle cell; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage.
    GO:0014731    spectrin-associated cytoskeleton    The part of the cytoskeleton composed of spectrin, protein 4.1 and ankyrin. Spectrin-associated cytoskeleton is associated with the plasma membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANK1_HUMAN | P161571n11 2yqf 2yvi 3f59 3kbu 3ud1 3ud2
        SPTB1_HUMAN | P112771s35 3edu 3f57 3kbu 3lbx

(-) Related Entries Specified in the PDB File

1u4q CHICKEN BRAIN ALPHA SPECTRIN REPEATS 15, 16, AND 17.
3edu A SMALLER SPECTRIN PORTION OF THIS COMPLEX CRYSTALLIZED WITHOUT ITS BINDING PARTNER (BETA1 SPECTRIN REPEATS 14 AND 15).
3edv ANKYRIN-BINDING SPECTRIN FRAGMENT FROM BETA2 SPECTRIN.
3f57 A SMALLER SPECTRIN PORTION OF THIS COMPLEX CRYSTALLIZED WITHOUT ITS BINDING PARTNER (BETA1 SPECTRIN REPEATS 14 AND 15).
3f59 THE ANKYRIN PORTION OF THIS COMPLEX (ZU5-ANK) CRYSTALLIZED WITHOUT ITS BINDING PARTNER.
3kbu