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(-) Description

Title :  CRYSTAL STRUCTURE OF ZU5-ANK, THE SPECTRIN BINDING REGION OF HUMAN ERYTHROID ANKYRIN
 
Authors :  J. J. Ipsaro, L. Huang, A. Mondragon
Date :  03 Nov 08  (Deposition) - 24 Feb 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Beta Sandwich, Zu5, Ankyrin, Spectrin Binding, Alternative Promoter Usage, Ank Repeat, Cytoskeleton, Disease Mutation, Elliptocytosis, Hereditary Hemolytic Anemia, Lipoprotein, Membrane, Phosphoprotein, Sarcoplasmic Reticulum, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. J. Ipsaro, L. Huang, A. Mondragon
Structures Of The Spectrin-Ankyrin Interaction Binding Domains.
Blood V. 113 5385 2009
PubMed-ID: 19141864  |  Reference-DOI: 10.1182/BLOOD-2008-10-184358

(-) Compounds

Molecule 1 - ANKYRIN-1
    AnkyrinUNP RESIDUES 911-1068
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPICANTE
    Expression System StrainROSETTA2(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentZU5-ANK, SPECTRIN BINDING REGION OF HUMAN ERYTHROID
    GeneANK1, ANK
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymERYTHROCYTE ANKYRIN, ANKYRIN-R

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric Unit (1, 18)
No.NameCountTypeFull Name
1BR18Ligand/IonBROMIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1BR-1Ligand/IonBROMIDE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:927 , GLY A:933BINDING SITE FOR RESIDUE BR A 2
02AC2SOFTWARESER A:1022 , TYR A:1024 , ILE A:1055BINDING SITE FOR RESIDUE BR A 3
03AC3SOFTWAREGLY A:928 , SER A:929 , ARG A:930BINDING SITE FOR RESIDUE BR A 4
04AC4SOFTWAREPRO A:964 , TRP A:1017BINDING SITE FOR RESIDUE BR A 18
05AC5SOFTWARESER B:1022 , ILE B:1055BINDING SITE FOR RESIDUE BR B 8
06AC6SOFTWAREARG B:930 , ASN B:932 , BR D:13 , HOH D:126BINDING SITE FOR RESIDUE BR B 12
07AC7SOFTWAREHOH B:152 , GLY B:928 , SER B:929 , ARG B:930 , LEU B:934BINDING SITE FOR RESIDUE BR B 17
08AC8SOFTWAREHOH C:124 , GLY C:928 , ARG C:930 , LEU C:934BINDING SITE FOR RESIDUE BR C 1
09AC9SOFTWAREASN A:932 , GLU C:1019BINDING SITE FOR RESIDUE BR C 5
10BC1SOFTWARESER C:916 , PHE C:917 , ARG C:948 , BR D:10BINDING SITE FOR RESIDUE BR C 9
11BC2SOFTWARESER C:998 , ARG C:1050BINDING SITE FOR RESIDUE BR C 15
12BC3SOFTWAREHOH D:37 , GLY D:928BINDING SITE FOR RESIDUE BR D 6
13BC4SOFTWAREBR C:9 , SER D:916 , PHE D:917 , ARG D:948BINDING SITE FOR RESIDUE BR D 10
14BC5SOFTWARESER D:998 , ARG D:1050BINDING SITE FOR RESIDUE BR D 11
15BC6SOFTWAREBR B:12 , GLU D:1019BINDING SITE FOR RESIDUE BR D 13
16BC7SOFTWAREHOH D:37BINDING SITE FOR RESIDUE BR D 14

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3F59)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:979 -Pro A:980
2Gly B:979 -Pro B:980
3Gly C:979 -Pro C:980
4Gly D:979 -Pro D:980

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 8)

Asymmetric Unit (2, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_026411V991LANK1_HUMANPolymorphism  ---A/B/C/DV991L
2UniProtVAR_054992I1054TANK1_HUMANDisease (SPH1)  ---A/B/C/DI1054T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_026411V991LANK1_HUMANPolymorphism  ---AV991L
2UniProtVAR_054992I1054TANK1_HUMANDisease (SPH1)  ---AI1054T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_026411V991LANK1_HUMANPolymorphism  ---BV991L
2UniProtVAR_054992I1054TANK1_HUMANDisease (SPH1)  ---BI1054T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_026411V991LANK1_HUMANPolymorphism  ---CV991L
2UniProtVAR_054992I1054TANK1_HUMANDisease (SPH1)  ---CI1054T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_026411V991LANK1_HUMANPolymorphism  ---DV991L
2UniProtVAR_054992I1054TANK1_HUMANDisease (SPH1)  ---DI1054T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZU5PS51145 ZU5 domain profile.ANK1_HUMAN913-1068
 
 
 
1070-1216
  4A:913-1068
B:913-1068
C:913-1068
D:913-1068
-
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZU5PS51145 ZU5 domain profile.ANK1_HUMAN913-1068
 
 
 
1070-1216
  1A:913-1068
-
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZU5PS51145 ZU5 domain profile.ANK1_HUMAN913-1068
 
 
 
1070-1216
  1-
B:913-1068
-
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZU5PS51145 ZU5 domain profile.ANK1_HUMAN913-1068
 
 
 
1070-1216
  1-
-
C:913-1068
-
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZU5PS51145 ZU5 domain profile.ANK1_HUMAN913-1068
 
 
 
1070-1216
  1-
-
-
D:913-1068
-

(-) Exons   (4, 15)

Asymmetric Unit (4, 15)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003475282aENSE00001381881chr8:41655140-41655030111ANK1_HUMAN1-990--
1.4ENST000003475284ENSE00001252297chr8:41615655-41615554102ANK1_HUMAN10-43340--
1.5ENST000003475285ENSE00001252286chr8:41591587-4159148999ANK1_HUMAN44-76330--
1.6ENST000003475286ENSE00001252279chr8:41585524-4158542699ANK1_HUMAN77-109330--
1.7ENST000003475287ENSE00001252268chr8:41584866-4158476899ANK1_HUMAN110-142330--
1.8ENST000003475288ENSE00001252255chr8:41583464-41583279186ANK1_HUMAN143-204620--
1.9ENST000003475289ENSE00001252247chr8:41582072-4158197499ANK1_HUMAN205-237330--
1.10ENST0000034752810ENSE00001252241chr8:41581151-4158105399ANK1_HUMAN238-270330--
1.11ENST0000034752811ENSE00001252233chr8:41580741-4158064399ANK1_HUMAN271-303330--
1.12ENST0000034752812ENSE00001252224chr8:41577376-41577179198ANK1_HUMAN304-369660--
1.13ENST0000034752813ENSE00001252214chr8:41575722-4157562499ANK1_HUMAN370-402330--
1.14ENST0000034752814ENSE00001252205chr8:41575220-4157512299ANK1_HUMAN403-435330--
1.15ENST0000034752815ENSE00001252199chr8:41574569-4157447199ANK1_HUMAN436-468330--
1.16ENST0000034752816ENSE00000692080chr8:41573367-41573170198ANK1_HUMAN469-534660--
1.17ENST0000034752817ENSE00001252194chr8:41572592-4157249499ANK1_HUMAN535-567330--
1.18ENST0000034752818ENSE00001252187chr8:41571772-4157167499ANK1_HUMAN568-600330--
1.19ENST0000034752819ENSE00000532984chr8:41566493-41566296198ANK1_HUMAN601-666660--
1.20aENST0000034752820aENSE00000692050chr8:41563759-4156366199ANK1_HUMAN667-699330--
1.21ENST0000034752821ENSE00000692046chr8:41561990-4156189299ANK1_HUMAN700-732330--
1.22ENST0000034752822ENSE00000532987chr8:41561657-4156155999ANK1_HUMAN733-765330--
1.23ENST0000034752823ENSE00001252162chr8:41559662-4155957093ANK1_HUMAN766-796310--
1.24ENST0000034752824ENSE00001252155chr8:41559140-4155906873ANK1_HUMAN797-821250--
1.26ENST0000034752826ENSE00001252145chr8:41557066-4155697097ANK1_HUMAN821-853330--
1.27ENST0000034752827ENSE00001252137chr8:41555639-4155556179ANK1_HUMAN853-879270--
1.29ENST0000034752829ENSE00001252128chr8:41554291-4155419498ANK1_HUMAN880-912333A:912-912
-
C:910-912
D:909-912
1
-
3
4
1.30ENST0000034752830ENSE00001191945chr8:41554105-41553881225ANK1_HUMAN912-987764A:912-987
B:913-987 (gaps)
C:912-987
D:912-987
76
75
76
76
1.31ENST0000034752831ENSE00001252111chr8:41552849-41552695155ANK1_HUMAN987-1039534A:987-1039 (gaps)
B:987-1039 (gaps)
C:987-1039 (gaps)
D:987-1039 (gaps)
53
53
53
53
1.32aENST0000034752832aENSE00001252103chr8:41552321-41552110212ANK1_HUMAN1039-1109714A:1039-1068
B:1039-1068
C:1039-1068
D:1039-1068
30
30
30
30
1.33ENST0000034752833ENSE00000532996chr8:41551620-41551416205ANK1_HUMAN1110-1178690--
1.34ENST0000034752834ENSE00000692020chr8:41550719-4155062397ANK1_HUMAN1178-1210330--
1.35aENST0000034752835aENSE00000532998chr8:41550394-41550166229ANK1_HUMAN1210-1286770--
1.36ENST0000034752836ENSE00001252076chr8:41548117-41547992126ANK1_HUMAN1287-1328420--
1.37aENST0000034752837aENSE00001252070chr8:41547864-41547745120ANK1_HUMAN1329-1368400--
1.38ENST0000034752838ENSE00000692006chr8:41546107-4154602979ANK1_HUMAN1369-1395270--
1.39ENST0000034752839ENSE00000533002chr8:41545748-4154567475ANK1_HUMAN1395-1420260--
1.40ENST0000034752840ENSE00000691993chr8:41543801-41543670132ANK1_HUMAN1420-1464450--
1.41ENST0000034752841ENSE00000691972chr8:41542208-41542062147ANK1_HUMAN1464-1513500--
1.43bENST0000034752843bENSE00000691945chr8:41530430-41529872559ANK1_HUMAN1513-16991870--
1.44bENST0000034752844bENSE00000691941chr8:41526082-41525785298ANK1_HUMAN1699-17981000--
1.47ENST0000034752847ENSE00001252325chr8:41521260-4152117784ANK1_HUMAN1799-1826280--
1.48cENST0000034752848cENSE00001361299chr8:41519459-41519319141ANK1_HUMAN1827-1873470--
1.49eENST0000034752849eENSE00001851591chr8:41513272-415107392534ANK1_HUMAN1874-188180--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:149
 aligned with ANK1_HUMAN | P16157 from UniProtKB/Swiss-Prot  Length:1881

    Alignment length:157
                                   921       931       941       951       961       971       981       991      1001      1011      1021      1031      1041      1051      1061       
          ANK1_HUMAN    912 GFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeee.......eeee........eeeeeeeehhhhh..........ee...eeeee....eeeeeeeeeee..--------.eeeeee......ee.....hhhhhhhhhh.......hhhhhhhhheeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------L--------------------------------------------------------------T-------------- SAPs(SNPs)
                    PROSITE -ZU5  PDB: A:913-1068 UniProt: 913-1068                                                                                                                       PROSITE
           Transcript 1 (1) 1--------------------------------------------------------------------------Exon 1.31  PDB: A:987-1039 (gaps) UniProt: 987-1039  ----------------------------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.30  PDB: A:912-987 UniProt: 912-987                                  ---------------------------------------------------Exon 1.32a  PDB: A:1039-1068   Transcript 1 (2)
                3f59 A  912 GFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHF--------ELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
                                   921       931       941       951       961       971       981       991    |    -   |  1011      1021      1031      1041      1051      1061       
                                                                                                              996     1005                                                               

Chain B from PDB  Type:PROTEIN  Length:149
 aligned with ANK1_HUMAN | P16157 from UniProtKB/Swiss-Prot  Length:1881

    Alignment length:156
                                   922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      
          ANK1_HUMAN    913 FLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee....eeee.......eeee........eeeeeeeehhhhh-.........ee...eeeee....eeeeeeeeeee..------..eeeeeee......ee.....hhhhhhhhhh.......hhhhhhhh.eeeeeeee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------L--------------------------------------------------------------T-------------- SAPs(SNPs)
                    PROSITE ZU5  PDB: B:913-1068 UniProt: 913-1068                                                                                                                       PROSITE
           Transcript 1 (1) --------------------------------------------------------------------------Exon 1.31  PDB: B:987-1039 (gaps) UniProt: 987-1039  ----------------------------- Transcript 1 (1)
           Transcript 1 (2) Exon 1.30  PDB: B:913-987 (gaps) UniProt: 912-987 [INCOMPLETE]             ---------------------------------------------------Exon 1.32a  PDB: B:1039-1068   Transcript 1 (2)
                3f59 B  913 FLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKL-TPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHF------DRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
                                   922       932       942       952      |962       972       982       992   |     -|     1012      1022      1032      1042      1052      1062      
                                                                        959 |                                996   1003                                                                 
                                                                          961                                                                                                           

Chain C from PDB  Type:PROTEIN  Length:153
 aligned with ANK1_HUMAN | P16157 from UniProtKB/Swiss-Prot  Length:1881

    Alignment length:159
                                   919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059         
          ANK1_HUMAN    910 HTGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....eeee.......eeee........eeeeeeee...............ee...eeeee....eeeeeeeeeee......---..eeeeee......ee..---hhhhhhhhhh.......hhhhhhhh.eeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------L--------------------------------------------------------------T-------------- SAPs(SNPs)
                    PROSITE ---ZU5  PDB: C:913-1068 UniProt: 913-1068                                                                                                                       PROSITE
           Transcript 1 (1) 1.2--------------------------------------------------------------------------Exon 1.31  PDB: C:987-1039 (gaps) UniProt: 987-1039  ----------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.30  PDB: C:912-987 UniProt: 912-987                                  ---------------------------------------------------Exon 1.32a  PDB: C:1039-1068   Transcript 1 (2)
                3f59 C  910 ATGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHG---RELVVLRSENGSVWKEHR---GESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
                                   919       929       939       949       959       969       979       989       999|   | 1009      1019 |   |1029      1039      1049      1059         
                                                                                                                   1000   |             1021   |                                           
                                                                                                                       1004                 1025                                           

Chain D from PDB  Type:PROTEIN  Length:154
 aligned with ANK1_HUMAN | P16157 from UniProtKB/Swiss-Prot  Length:1881

    Alignment length:160
                                   918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068
          ANK1_HUMAN    909 VHTGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeee.......eeee........eeeeeeeehhhhh..........ee...eeeee....eeeeeeeeeee.....----.eeeeeee......ee...--hhhhhhhhhh.......hhhhhhhh.eeeeeeee...eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------L--------------------------------------------------------------T-------------- SAPs(SNPs)
                    PROSITE ----ZU5  PDB: D:913-1068 UniProt: 913-1068                                                                                                                       PROSITE
           Transcript 1 (1) 1.29--------------------------------------------------------------------------Exon 1.31  PDB: D:987-1039 (gaps) UniProt: 987-1039  ----------------------------- Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.30  PDB: D:912-987 UniProt: 912-987                                  ---------------------------------------------------Exon 1.32a  PDB: D:1039-1068   Transcript 1 (2)
                3f59 D  909 NATGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASH----RELVVLRSENGSVWKEHRS--GESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 1068
                                   918       928       938       948       958       968       978       988       998|    |1008      1018   |  1028      1038      1048      1058      1068
                                                                                                                    999 1004              1022  |                                           
                                                                                                                                             1025                                           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3F59)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3F59)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F59)

(-) Gene Ontology  (30, 30)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ANK1_HUMAN | P16157)
molecular function
    GO:0051117    ATPase binding    Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP.
    GO:0008093    cytoskeletal adaptor activity    The binding activity of a molecule that brings together a cytoskeletal protein and one or more other molecules, permitting them to function in a coordinated way.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030507    spectrin binding    Interacting selectively and non-covalently with spectrin, a protein that is the major constituent of the erythrocyte cytoskeletal network. It associates with band 4.1 (see band protein) and actin to form the cytoskeletal superstructure of the erythrocyte plasma membrane. It is composed of nonhomologous chains, alpha and beta, which aggregate side-to-side in an antiparallel fashion to form dimers, tetramers, and higher polymers.
    GO:0005200    structural constituent of cytoskeleton    The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0006888    ER to Golgi vesicle-mediated transport    The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
    GO:0007010    cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
    GO:0006887    exocytosis    A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell.
    GO:0045199    maintenance of epithelial cell apical/basal polarity    The maintenance of the apicobasal polarity of an epithelial cell.
    GO:0010638    positive regulation of organelle organization    Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle.
    GO:0072661    protein targeting to plasma membrane    The process of directing proteins towards the plasma membrane; usually uses signals contained within the protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0031672    A band    The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line.
    GO:0031430    M band    The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines.
    GO:0030018    Z disc    Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
    GO:0030673    axolemma    The portion of the plasma membrane surrounding an axon; it is a specialized trilaminar random mosaic of protein molecules floating within a fluid matrix of highly mobile phospholipid molecules, 7-8 nm in thickness.
    GO:0016323    basolateral plasma membrane    The region of the plasma membrane that includes the basal end and sides of the cell. Often used in reference to animal polarized epithelial membranes, where the basal membrane is the part attached to the extracellular matrix, or in plant cells, where the basal membrane is defined with respect to the zygotic axis.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045211    postsynaptic membrane    A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane.
    GO:0042383    sarcolemma    The outer membrane of a muscle cell, consisting of the plasma membrane, a covering basement membrane (about 100 nm thick and sometimes common to more than one fiber), and the associated loose network of collagen fibers.
    GO:0016529    sarcoplasmic reticulum    A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle cell; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage.
    GO:0014731    spectrin-associated cytoskeleton    The part of the cytoskeleton composed of spectrin, protein 4.1 and ankyrin. Spectrin-associated cytoskeleton is associated with the plasma membrane.

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        ANK1_HUMAN | P161571n11 2yqf 2yvi 3kbt 3kbu 3ud1 3ud2

(-) Related Entries Specified in the PDB File

3f57 CRYSTAL STRUCTURE OF HUMAN ERYTHROID BETA SPECTRIN REPEATS 14 AND 15 (ANKYRIN BINDING DOMAIN)