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(-) Description

Title :  CRYSTAL STRUCTURE OF A PLASMID PARTITION PROTEIN FROM BORRELIA BURGDORFERI AT 2.25A RESOLUTION, IODIDE SOAK
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  15 Oct 09  (Deposition) - 03 Nov 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Ssgcid, Sbri, Decode Biostructures, Uw, Nih, Niaid, Borellia Burgdorferi, Plasmid Partition Protein, Iodide, Sad Phasing, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Abendroth, A. S. Gardberg, J. I. Robinson, J. S. Christensen, B. L. Staker, P. J. Myler, L. J. Stewart, T. E. Edwards
Sad Phasing Using Iodide Ions In A High-Throughput Structural Genomics Environment.
J Struct Funct Genomics V. 12 83 2011
PubMed-ID: 21359836  |  Reference-DOI: 10.1007/S10969-011-9101-7

(-) Compounds

Molecule 1 - PF-32 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PF-32, BB_S35
    Organism Common: LYME DISEASE SPIROCHETE
    Organism Scientific: BORRELIA BURGDORFERI
    Organism Taxid: 224326
    Strain: B31
    Synonym: PLASMID PARTITION PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1IOD12Ligand/IonIODIDE ION
2NA1Ligand/IonSODIUM ION
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1IOD24Ligand/IonIODIDE ION
2NA-1Ligand/IonSODIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:99 , SER A:102 , LEU A:135 , HOH A:267 , HOH A:282 , HOH A:313BINDING SITE FOR RESIDUE NA A 300
02AC2SOFTWAREALA A:155BINDING SITE FOR RESIDUE IOD A 247
03AC3SOFTWARELYS A:33 , ASN A:87BINDING SITE FOR RESIDUE IOD A 248
04AC4SOFTWAREASN A:167 , HOH A:281BINDING SITE FOR RESIDUE IOD A 249
05AC5SOFTWAREILE A:14BINDING SITE FOR RESIDUE IOD A 250
06AC6SOFTWAREASN A:34 , ASN A:88BINDING SITE FOR RESIDUE IOD A 252
07AC7SOFTWARESER A:50 , TRP A:158BINDING SITE FOR RESIDUE IOD A 254
08AC8SOFTWAREHOH A:272BINDING SITE FOR RESIDUE IOD A 255
09AC9SOFTWAREHOH A:330BINDING SITE FOR RESIDUE IOD A 257
10BC1SOFTWAREASN A:35BINDING SITE FOR RESIDUE IOD A 258

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K9G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K9G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K9G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K9G)

(-) Exons   (0, 0)

(no "Exon" information available for 3K9G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
 aligned with O68233_BORBG | O68233 from UniProtKB/TrEMBL  Length:246

    Alignment length:242
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244  
         O68233_BORBG     5 KPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLFEILKTKDRFLGTISEREDLNRRIAENNNFDLNKDYIKEYENILEIFLKKI 246
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhh.......hhhhhhh...hhhhhheeee..eeee..hhhhhhh......hhhhhhhhhhhh......eeeeee....hhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhh......eeeeeeee......hhhhhhhh....eeeeee.----------------.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k9g A   5 KPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLFEILKTKDRFLGTISE----------------NKDYIKEYENILEIFLKKI 246
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204      |  -         -   |   234       244  
                                                                                                                                                                                                                                        211              228
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K9G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K9G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3K9G)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3K9G)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O68233_BORBG | O68233: 3k9h

(-) Related Entries Specified in the PDB File

3k9h