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(-) Description

Title :  CRYSTAL STRUCTURE OF A PLASMID PARTITION PROTEIN FROM BORRELIA BURGDORFERI AT 2.25A RESOLUTION
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Date :  15 Oct 09  (Deposition) - 03 Nov 09  (Release) - 10 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ssgcid, Sbri, Decode Biostructures, Uw, Nih, Niaid, Borellia Burgdorferi, Plasmid Partition Protein, Plasmid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid), J. Abendroth, T. Edwards, B. Staker
Crystal Structure Of A Plasmid Partition Protein From Borrelia Burgdorferi At 2. 25A Resolution
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PF-32 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PF-32, BB_S35
    Organism Common: LYME DISEASE SPIROCHETE
    Organism Scientific: BORRELIA BURGDORFERI
    Organism Taxid: 224326
    Strain: B31

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:17 , VAL A:18 , GLY A:19 , LYS A:20 , SER A:21 , HOH A:322 , HOH A:353 , HOH A:354BINDING SITE FOR RESIDUE SO4 A 300
2AC2SOFTWAREGLY B:17 , VAL B:18 , GLY B:19 , LYS B:20 , SER B:21 , HOH B:299 , HOH B:351BINDING SITE FOR RESIDUE SO4 B 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K9H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K9H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K9H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K9H)

(-) Exons   (0, 0)

(no "Exon" information available for 3K9H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:229
 aligned with O68233_BORBG | O68233 from UniProtKB/TrEMBL  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
         O68233_BORBG     4 KKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLFEILKTKDRFLGTISEREDLNRRIAENNNFDLNKDYIKEYENILEIFLKKI 246
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh.......hhhhhhh...hhhhh.eeee..eeee..hhhhhhh......hhhhhhhhhhhhh.....eeeee.....hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhh....eeeeee...--------------.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k9h A   4 KKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLFEILKTKDRFLGTISERE--------------NKDYIKEYENILEIFLKKI 246
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213         -    |  233       243   
                                                                                                                                                                                                                                           213            228                  


Chain B from PDB  Type:PROTEIN  Length:229
 aligned with O68233_BORBG | O68233 from UniProtKB/TrEMBL  Length:246

    Alignment length:243
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243   
         O68233_BORBG     4 KKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLFEILKTKDRFLGTISEREDLNRRIAENNNFDLNKDYIKEYENILEIFLKKI 246
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......hhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhh.......hhhhhhh...hhhhhheeee..eeee..hhhhhhhhh....hhhhhhhhhhh.......eeeeee....hhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhh....eeeeee...--------------.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k9h B   4 KKPKIITIASIKGGVGKSTSAIILATLLSKNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNRTHKTLFEILKTKDRFLGTISERE--------------NKDYIKEYENILEIFLKKI 246
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213         -    |  233       243   
                                                                                                                                                                                                                                           213            228
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K9H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K9H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3K9H)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3K9H)

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  3k9h
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O68233_BORBG | O68233: 3k9g

(-) Related Entries Specified in the PDB File

3k9g ORIGINAL STRUCTURE, EXPERIMENTALLY PHASED VIA IODIDE SAD RELATED ID: BOBUA.01478.A RELATED DB: TARGETDB