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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOTOSYNTHETIC A4 ISOFORM GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH NAD, FROM ARABIDOPSIS THALIANA
 
Authors :  S. Fermani, G. Falini, A. Thumiger, F. Sparla, L. Marri, P. Trost
Date :  29 Sep 09  (Deposition) - 09 Jun 10  (Release) - 02 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,O,Q
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  O,Q  (2x)
Keywords :  Rossmann Fold, Calvin Cycle, Chloroplast, Membrane, Nadp, Oxidoreductase, Transit Peptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Fermani, F. Sparla, L. Marri, A. Thumiger, P. Pupillo, G. Falini, P. Trost
Structure Of Photosynthetic Glyceraldehyde-3-Phosphate Dehydrogenase (Isoform A4) From Arabidopsis Thaliana In Complex With Nad
Acta Crystallogr. , Sect. F V. 66 621 2010
PubMed-ID: 20516587  |  Reference-DOI: 10.1107/S1744309110013527
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE A, CHLOROPLASTIC
    Chains: A, B, C, D, E, F, G, H, O, Q
    EC Number: 1.2.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GAPA
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: NADP-DEPENDENT GLYCERALDEHYDEPHOSPHATE DEHYDROGENASE SUBUNIT A

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHOQ
Biological Unit 1 (1x): ABCD      
Biological Unit 2 (1x):     EFGH  
Biological Unit 3 (2x):         OQ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 55)

Asymmetric Unit (2, 55)
No.NameCountTypeFull Name
1NAD10Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO445Ligand/IonSULFATE ION
Biological Unit 1 (2, 23)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO419Ligand/IonSULFATE ION
Biological Unit 2 (2, 19)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO415Ligand/IonSULFATE ION
Biological Unit 3 (2, 26)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO422Ligand/IonSULFATE ION

(-) Sites  (55, 55)

Asymmetric Unit (55, 55)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:7 , PHE A:8 , GLY A:9 , ARG A:10 , ILE A:11 , ASP A:32 , THR A:33 , ARG A:77 , GLY A:95 , THR A:96 , GLY A:97 , VAL A:98 , PHE A:99 , THR A:119 , ALA A:120 , CYS A:149 , ASN A:313 , TYR A:317 , SO4 A:336 , HOH A:343 , HOH A:345BINDING SITE FOR RESIDUE NAD A 335
02AC2SOFTWARETHR A:179 , ASP A:181 , ARG A:195 , ARG A:231 , NAD A:335BINDING SITE FOR RESIDUE SO4 A 336
03AC3SOFTWARESER A:148 , THR A:208 , GLY A:209 , ALA A:210BINDING SITE FOR RESIDUE SO4 A 337
04AC4SOFTWAREARG A:20 , LYS A:21 , HOH A:800BINDING SITE FOR RESIDUE SO4 A 334
05AC5SOFTWAREARG A:102 , ASP A:124 , HOH A:372 , HOH A:373BINDING SITE FOR RESIDUE SO4 A 338
06AC6SOFTWAREPHE A:251 , ALA A:252 , GLU A:253 , VAL A:299BINDING SITE FOR RESIDUE SO4 A 339
07AC7SOFTWAREGLU A:253 , ASN A:256 , ARG A:260 , HOH A:865BINDING SITE FOR RESIDUE SO4 A 340
08AC8SOFTWARESER A:138 , HIS A:139 , HOH A:706 , HOH A:783BINDING SITE FOR RESIDUE SO4 A 341
09AC9SOFTWAREGLY B:7 , PHE B:8 , GLY B:9 , ARG B:10 , ILE B:11 , ASN B:31 , ARG B:77 , GLY B:95 , THR B:96 , GLY B:97 , PHE B:99 , THR B:119 , ALA B:120 , CYS B:149 , ASN B:313 , TYR B:317 , SO4 B:336 , HOH B:354BINDING SITE FOR RESIDUE NAD B 335
10BC1SOFTWARETHR B:179 , ASP B:181 , ARG B:195 , NAD B:335 , HOH B:874BINDING SITE FOR RESIDUE SO4 B 336
11BC2SOFTWARESER B:148 , THR B:150 , THR B:208 , GLY B:209 , ALA B:210 , HOH B:784 , HOH B:874BINDING SITE FOR RESIDUE SO4 B 337
12BC3SOFTWAREARG B:102 , LYS B:122A , GLY B:123 , ASP B:124BINDING SITE FOR RESIDUE SO4 B 334
13BC4SOFTWARESER B:138 , HIS B:139 , ASP B:140 , ASN B:331BINDING SITE FOR RESIDUE SO4 B 338
14BC5SOFTWAREGLU B:253 , ASN B:256 , ARG B:260BINDING SITE FOR RESIDUE SO4 B 339
15BC6SOFTWAREGLY C:7 , PHE C:8 , GLY C:9 , ARG C:10 , ILE C:11 , ASP C:32 , THR C:33 , ARG C:77 , GLY C:95 , THR C:96 , GLY C:97 , PHE C:99 , THR C:119 , ALA C:120 , CYS C:149 , ASN C:313 , TYR C:317 , SO4 C:336 , HOH C:349 , HOH C:376BINDING SITE FOR RESIDUE NAD C 335
16BC7SOFTWARETHR C:179 , ASP C:181 , ARG C:231 , NAD C:335 , HOH C:388BINDING SITE FOR RESIDUE SO4 C 336
17BC8SOFTWARESER C:148 , THR C:208 , GLY C:209 , ALA C:210BINDING SITE FOR RESIDUE SO4 C 337
18BC9SOFTWARESER C:138 , HIS C:139 , ASN C:331BINDING SITE FOR RESIDUE SO4 C 334
19CC1SOFTWAREASN C:256 , ARG C:260 , HOH C:412 , HOH C:413BINDING SITE FOR RESIDUE SO4 C 338
20CC2SOFTWAREGLY D:7 , PHE D:8 , GLY D:9 , ARG D:10 , ILE D:11 , ASP D:32 , THR D:33 , ASN D:76 , ARG D:77 , THR D:96 , GLY D:97 , THR D:119 , ALA D:120 , CYS D:149 , ASN D:313 , TYR D:317 , SO4 D:336 , HOH D:365 , HOH D:366 , HOH D:377BINDING SITE FOR RESIDUE NAD D 335
21CC3SOFTWARETHR D:179 , ASP D:181 , ARG D:231 , NAD D:335BINDING SITE FOR RESIDUE SO4 D 336
22CC4SOFTWARESER D:148 , CYS D:149 , THR D:150 , THR D:208 , ARG D:231 , HOH D:399BINDING SITE FOR RESIDUE SO4 D 337
23CC5SOFTWAREGLU D:253 , ASN D:256 , ARG D:260BINDING SITE FOR RESIDUE SO4 D 334
24CC6SOFTWAREGLY E:7 , PHE E:8 , GLY E:9 , ARG E:10 , ILE E:11 , ASN E:31 , THR E:33 , ARG E:77 , GLY E:95 , THR E:96 , GLY E:97 , THR E:119 , ALA E:120 , CYS E:149 , THR E:179 , ASN E:313 , GLU E:314 , TYR E:317 , SO4 E:336BINDING SITE FOR RESIDUE NAD E 335
25CC7SOFTWARETHR E:179 , ASP E:181 , ARG E:195 , ARG E:231 , NAD E:335BINDING SITE FOR RESIDUE SO4 E 336
26CC8SOFTWARESER E:148 , THR E:150 , THR E:208 , GLY E:209 , ALA E:210BINDING SITE FOR RESIDUE SO4 E 337
27CC9SOFTWAREGLU E:253 , ASN E:256 , ARG E:260 , SER E:294 , HOH E:536BINDING SITE FOR RESIDUE SO4 E 334
28DC1SOFTWAREASP E:135 , ILE E:327 , ASN E:331BINDING SITE FOR RESIDUE SO4 E 338
29DC2SOFTWAREGLY F:7 , GLY F:9 , ARG F:10 , ILE F:11 , ASP F:32 , ARG F:77 , GLY F:95 , THR F:96 , GLY F:97 , VAL F:98 , PHE F:99 , THR F:119 , ALA F:120 , CYS F:149 , ASN F:313 , TYR F:317 , SER G:188BINDING SITE FOR RESIDUE NAD F 335
30DC3SOFTWARETHR F:179 , ASP F:181 , ARG F:195 , ARG F:231BINDING SITE FOR RESIDUE SO4 F 336
31DC4SOFTWARESER F:148 , THR F:150 , THR F:208 , GLY F:209 , ALA F:210BINDING SITE FOR RESIDUE SO4 F 337
32DC5SOFTWAREGLU F:253 , ASN F:256 , ARG F:260 , ASP F:275BINDING SITE FOR RESIDUE SO4 F 334
33DC6SOFTWAREGLY G:7 , GLY G:9 , ARG G:10 , ILE G:11 , ASP G:32 , THR G:33 , ARG G:77 , THR G:96 , GLY G:97 , PHE G:99 , THR G:119 , ALA G:120 , CYS G:149 , THR G:179 , ASN G:313 , GLU G:314 , TYR G:317 , SO4 G:336 , HOH G:340BINDING SITE FOR RESIDUE NAD G 335
34DC7SOFTWARETHR G:179 , ASP G:181 , ARG G:195 , ARG G:231 , NAD G:335BINDING SITE FOR RESIDUE SO4 G 336
35DC8SOFTWARESER G:148 , THR G:150 , THR G:208 , GLY G:209 , ALA G:210BINDING SITE FOR RESIDUE SO4 G 337
36DC9SOFTWARETHR G:127 , LEU G:216BINDING SITE FOR RESIDUE SO4 G 334
37EC1SOFTWARESER G:138 , HIS G:139 , ASP G:140BINDING SITE FOR RESIDUE SO4 G 338
38EC2SOFTWAREGLU G:253 , ASN G:256 , ARG G:260 , HOH G:344 , HOH G:652BINDING SITE FOR RESIDUE SO4 G 339
39EC3SOFTWARESER E:188 , GLY H:7 , PHE H:8 , GLY H:9 , ARG H:10 , ILE H:11 , ASP H:32 , THR H:33 , ARG H:77 , GLY H:95 , THR H:96 , GLY H:97 , VAL H:98 , THR H:119 , ALA H:120 , CYS H:149 , THR H:179 , ASN H:313 , GLU H:314 , TYR H:317 , SO4 H:336BINDING SITE FOR RESIDUE NAD H 335
40EC4SOFTWARETHR H:179 , ASP H:181 , ARG H:195 , ARG H:231 , NAD H:335BINDING SITE FOR RESIDUE SO4 H 336
41EC5SOFTWARESER H:148 , THR H:150 , SER H:207 , THR H:208 , ALA H:210 , HOH H:861 , HOH H:862BINDING SITE FOR RESIDUE SO4 H 337
42EC6SOFTWAREGLU H:253 , ASN H:256 , ARG H:260 , SER H:294BINDING SITE FOR RESIDUE SO4 H 334
43EC7SOFTWAREGLY O:7 , PHE O:8 , GLY O:9 , ARG O:10 , ILE O:11 , ASP O:32 , THR O:33 , ARG O:77 , GLY O:95 , THR O:96 , GLY O:97 , PHE O:99 , THR O:119 , ALA O:120 , ASN O:313 , TYR O:317 , SO4 O:336 , HOH O:346 , HOH O:359 , HOH O:362 , HOH O:370 , HOH O:434 , HOH O:435 , HOH O:436 , HOH O:440BINDING SITE FOR RESIDUE NAD O 335
44EC8SOFTWAREHOH O:35 , THR O:179 , ASP O:181 , ARG O:195 , ARG O:231 , NAD O:335 , HOH O:398 , HOH O:415BINDING SITE FOR RESIDUE SO4 O 336
45EC9SOFTWARESER O:148 , THR O:150 , THR O:208 , ALA O:210 , HOH O:397 , HOH O:407 , HOH O:857BINDING SITE FOR RESIDUE SO4 O 337
46FC1SOFTWAREGLY O:60A , GLU O:61 , THR O:62 , HOH O:375BINDING SITE FOR RESIDUE SO4 O 334
47FC2SOFTWAREARG O:102 , LYS O:122A , GLY O:123 , ASP O:124BINDING SITE FOR RESIDUE SO4 O 338
48FC3SOFTWARELYS C:122A , SER O:138 , HIS O:139 , ASP O:140 , LYS O:333 , HOH O:409BINDING SITE FOR RESIDUE SO4 O 339
49FC4SOFTWAREGLU O:253 , ASN O:256 , ARG O:260BINDING SITE FOR RESIDUE SO4 O 340
50FC5SOFTWAREGLY Q:7 , PHE Q:8 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASP Q:32 , THR Q:33 , ARG Q:77 , GLY Q:95 , THR Q:96 , GLY Q:97 , PHE Q:99 , THR Q:119 , ALA Q:120 , CYS Q:149 , THR Q:179 , ASN Q:313 , TYR Q:317 , SO4 Q:336 , HOH Q:346 , HOH Q:350 , HOH Q:446BINDING SITE FOR RESIDUE NAD Q 335
51FC6SOFTWARETHR Q:179 , ASP Q:181 , ARG Q:195 , ARG Q:231 , NAD Q:335BINDING SITE FOR RESIDUE SO4 Q 336
52FC7SOFTWARESER Q:148 , THR Q:150 , THR Q:208 , GLY Q:209 , ALA Q:210 , HOH Q:467 , HOH Q:790BINDING SITE FOR RESIDUE SO4 Q 337
53FC8SOFTWAREPRO Q:126 , THR Q:127 , TYR Q:128 , ASN Q:133 , LEU Q:216 , HOH Q:462BINDING SITE FOR RESIDUE SO4 Q 334
54FC9SOFTWAREPHE Q:251 , ALA Q:252 , VAL Q:299 , HOH Q:477BINDING SITE FOR RESIDUE SO4 Q 338
55GC1SOFTWAREARG Q:284 , HOH Q:805BINDING SITE FOR RESIDUE SO4 Q 339

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K2B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K2B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K2B)

(-) PROSITE Motifs  (1, 10)

Asymmetric Unit (1, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3PA1_ARATH211-218
 
 
 
 
 
 
 
 
 		  10A:147-154
B:147-154
C:147-154
D:147-154
E:147-154
F:147-154
G:147-154
H:147-154
O:147-154
Q:147-154
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3PA1_ARATH211-218
 
 
 
 
 
 
 
 
 		  4A:147-154
B:147-154
C:147-154
D:147-154
-
-
-
-
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3PA1_ARATH211-218
 
 
 
 
 
 
 
 
 		  4-
-
-
-
E:147-154
F:147-154
G:147-154
H:147-154
-
-
Biological Unit 3 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GAPDHPS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.G3PA1_ARATH211-218
 
 
 
 
 
 
 
 
 		  4-
-
-
-
-
-
-
-
O:147-154
Q:147-154

(-) Exons   (0, 0)

(no "Exon" information available for 3K2B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:337
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:337
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       
         G3PA1_ARATH     60 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --3k2bA01 A:1-147,A:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bA02 A:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bA01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhh..........eeee...eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhh....eeee...............hhhhh.....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee...................hhhhh.eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeeehhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3k2b A   0A AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  333
                            |        8        18||      26       |37        47        57   |    66        76        86        96       106       116      |125       135       145       155       165       175       185  ||   196       206       216       226       236       246       256       266       276       286       296       306       316       326       
                            |                 18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                           0A                  18B               36                                                                                                                                                        190                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:337
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:337
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       
         G3PA1_ARATH     60 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --3k2bB01 B:1-147,B:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bB02 B:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bB01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhh..........eeee...eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee...............hhhhh.....eee....hhhhhhhhhhhhhhhhheeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh....eeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3k2b B   0A AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  333
                            |        8        18||      26       |37        47        57   |    66        76        86        96       106       116      |125       135       145       155       165       175       185  ||   196       206       216       226       236       246       256       266       276       286       296       306       316       326       
                           0A                 18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                               18B               36                                                                                                                                                        190                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:337
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:337
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       
         G3PA1_ARATH     60 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --3k2bC01 C:1-147,C:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bC02 C:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bC01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhh..........eee....eeee..eeeeee...hhhhh........eeee......hhhhhhhhhhh...eeee...............hhhhh.....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh....eeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.............hhhhhh......ee.hhhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3k2b C   0A AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  333
                            |        8        18||      26       |37        47        57   |    66        76        86        96       106       116      |125       135       145       155       165       175       185  ||   196       206       216       226       236       246       256       266       276       286       296       306       316       326       
                           0A                 18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                               18B               36                                                                                                                                                        190                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:336
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:336
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      
         G3PA1_ARATH     61 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -3k2bD01 D:1-147,D:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bD02 D:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bD01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhh..........eee....eeee....eeee...hhhhh........eeee......hhhhhhhhhh....eeee...............hhhhh.....eee....hhhhhhhhhhhhhhhhheeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh.....eeeee.....eeeeeeeee....hhhhhhhhhhhhhh......eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3k2b D    0 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  333
                                     9       18A|       27      ||38        48        58  |     67        77        87        97       107       117     | 126       136       146       156       166       176       186 ||    197       207       217       227       237       247       257       267       277       287       297       307       317       327      
                                             18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                              18B               36                                                                                                                                                        190                                                                                                                                               


Chain E from PDB  Type:PROTEIN  Length:336
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:336
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389      
         G3PA1_ARATH     60 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW  395
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains --3k2bE01 E:1-147,E:314-332 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bE02 E:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bE01             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh....eeeeeee...hhhhhhhh..ee...ee....eeee...eeee...........hhhhh........eeee......hhhhhhhhhh....eeee...............hhhhh.....eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee...................hhhhh.eee......hhhhhhhhhh....eeeeee.....eeeeeeeee....hhhhhhh.hhhhhhh......ee......hhhhh......ee.hhhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3k2b E   0A AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW  332
                            |        8        18||      26       |37        47        57   |    66        76        86        96       106       116      |125       135       145       155       165       175       185  ||   196       206       216       226       236       246       256       266       276       286       296       306       316       326      
                           0A                 18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                              
                                               18B               36                                                                                                                                                        190                                                                                                                                              


Chain F from PDB  Type:PROTEIN  Length:336
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:336
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      
         G3PA1_ARATH     61 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -3k2bF01 F:1-147,F:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bF02 F:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bF01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhhh..........ee.....eeee...eeeeee..hhhhh........eeee......hhhhhh........eeee..............hhhhh......eee....hhhhhhhhhhhhhhhh.eeeeeeeeeee.........................eeee.hhhhhhhhh.......eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee.....hhhhh.....eeee....eee...eeeeeeee....hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3k2b F    0 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  333
                                     9       18A|       27      ||38        48        58  |     67        77        87        97       107       117     | 126       136       146       156       166       176       186 ||    197       207       217       227       237       247       257       267       277       287       297       307       317       327      
                                             18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                              18B               36                                                                                                                                                        190                                                                                                                                               


Chain G from PDB  Type:PROTEIN  Length:336
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:336
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      
         G3PA1_ARATH     61 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -3k2bG01 G:1-147,G:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bG02 G:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bG01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhh......eeeeeee...hhhhhhhhhhee...ee....ee.....eeee..eeeeee...hhhhh........eeee......hhhhhhhhhhh...eeee..............hhhhhh.....eee..hhhhhhhhhhhhhhhhhhh....eeeeeee.............hhhhhh......eee..hhhhhhhhhhhhhh....eeeeee.....eeeeee.......hhhhhhhhhhhhhhh.....ee......hhhhh......eee.hhhh..........eeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3k2b G    0 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  333
                                     9       18A|       27      ||38        48        58  |     67        77        87        97       107       117     | 126       136       146       156       166       176       186 ||    197       207       217       227       237       247       257       267       277       287       297       307       317       327      
                                             18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                              18B               36                                                                                                                                                        190                                                                                                                                               


Chain H from PDB  Type:PROTEIN  Length:335
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:335
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390     
         G3PA1_ARATH     61 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW  395
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -3k2bH01 H:1-147,H:314-332 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bH02 H:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bH01             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhh......eeeeee...hhhhhhhh..ee...ee....eee.....eee......ee................eeee......hhhhhhhhhhh...eeee.........................eee....hhhhhhhhhhhhhhhhheee..eeeeee...................hhhhh.eeee.....hhhhhhhhhh.....eeeee.....eeeeeeeee....hhhhhhhhhhhhh.......eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3k2b H    0 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW  332
                                     9       18A|       27      ||38        48        58  |     67        77        87        97       107       117     | 126       136       146       156       166       176       186 ||    197       207       217       227       237       247       257       267       277       287       297       307       317       327     
                                             18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                              
                                              18B               36                                                                                                                                                        190                                                                                                                                              


Chain O from PDB  Type:PROTEIN  Length:337
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:337
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       
         G3PA1_ARATH     60 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --3k2bO01 O:1-147,O:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bO02 O:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bO01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhh..........eee....eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee...............hhhhh.....eee..hhhhhhhhhhhhhhhhhh.eeeeeeeeeee.........................eee..hhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3k2b O   0A AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  333
                            |        8        18||      26       |37        47        57   |    66        76        86        96       106       116      |125       135       145       155       165       175       185  ||   196       206       216       226       236       246       256       266       276       286       296       306       316       326       
                           0A                 18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                               18B               36                                                                                                                                                        190                                                                                                                                               


Chain Q from PDB  Type:PROTEIN  Length:336
 aligned with G3PA1_ARATH | P25856 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:336
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390      
         G3PA1_ARATH     61 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -3k2bQ01 Q:1-147,Q:314-333 NAD(P)-binding Rossmann-like Domain                                                                                         3k2bQ02 Q:148-313 Dihydrodipicolinate Reductase; domain 2                                                                                                            3k2bQ01              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhh.......eeeee....hhhhhhhhhee...ee....eee....eeee..eeeeee...hhhhhhhhhhh..eeee......hhhhhhhhhhh...eeee...............hhhhh.....eee..hhhhhhhhhhhhhhhhhhheeeeeeeeeee.........................eeee.hhhhhhhhhhhhhh....eeeeee.....eeeeeeeee....hhhhhhhhhhhhhhh.....eeee....hhhhhh.....eeee.hhheee...eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------GAPDH   ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3k2b Q    0 KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK  333
                                     9       18A|       27      ||38        48        58  |     67        77        87        97       107       117     | 126       136       146       156       166       176       186 ||    197       207       217       227       237       247       257       267       277       287       297       307       317       327      
                                             18A|              34|                      60A                                                           122A                                                               188|                                                                                                                                               
                                              18B               36                                                                                                                                                        190
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K2B)

(-) CATH Domains  (2, 20)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Dihydrodipicolinate Reductase; domain 2 (182)
(-)
Homologous Superfamily: Dihydrodipicolinate Reductase; domain 2 (178)
(-)
Thale cress (Arabidopsis thaliana) (3)
1a3k2bA02A:148-313
1b3k2bC02C:148-313
1c3k2bD02D:148-313
1d3k2bE02E:148-313
1e3k2bF02F:148-313
1f3k2bG02G:148-313
1g3k2bH02H:148-313
1h3k2bO02O:148-313
1i3k2bQ02Q:148-313
1j3k2bB02B:148-313
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)
(-)
Thale cress (Arabidopsis thaliana) (15)
2a3k2bA01A:1-147,A:314-333
2b3k2bO01O:1-147,O:314-333
2c3k2bQ01Q:1-147,Q:314-333
2d3k2bE01E:1-147,E:314-332
2e3k2bH01H:1-147,H:314-332
2f3k2bB01B:1-147,B:314-333
2g3k2bC01C:1-147,C:314-333
2h3k2bD01D:1-147,D:314-333
2i3k2bF01F:1-147,F:314-333
2j3k2bG01G:1-147,G:314-333

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3K2B)

(-) Gene Ontology  (22, 22)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,O,Q   (G3PA1_ARATH | P25856)
molecular function
    GO:0051287    NAD binding    Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0047100    glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity    Catalysis of the reaction: phosphate + NADP+ + glyceraldehyde-3-phosphate = NADPH + 3-phospho-D-glyceroyl-phosphate.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0019253    reductive pentose-phosphate cycle    The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate.
    GO:0009409    response to cold    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
    GO:0009416    response to light stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
    GO:0009744    response to sucrose    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.
cellular component
    GO:0048046    apoplast    The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it.
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009941    chloroplast envelope    The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.
    GO:0031969    chloroplast membrane    Either of the lipid bilayers that surround a chloroplast and form the chloroplast envelope.
    GO:0009570    chloroplast stroma    The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
    GO:0009535    chloroplast thylakoid membrane    The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
    GO:0010319    stromule    Thin filamentous structure extending from the surface of all plastid types examined so far, including chloroplast, proplastid, etioplast, leucoplast, amyloplast, and chromoplast. In general, stromules are more abundant in tissues containing non-green plastids, and in cells containing smaller plastids. The primary function of stromules is still unresolved, although the presence of stromules markedly increases the plastid surface area, potentially increasing transport to and from the cytosol. Other functions of stromules, such as transfer of macromolecules between plastids and starch granule formation in cereal endosperm, may be restricted to particular tissues and cell types.

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(-) Related Entries Specified in the PDB File

1nbo THE A4-GAPDH COMPLEXED WITH NAD FROM SPINACIA OLERACIA