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3K2B
Asym. Unit
Info
Asym.Unit (556 KB)
Biol.Unit 1 (223 KB)
Biol.Unit 2 (221 KB)
Biol.Unit 3 (228 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOTOSYNTHETIC A4 ISOFORM GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE COMPLEXED WITH NAD, FROM ARABIDOPSIS THALIANA
Authors
:
S. Fermani, G. Falini, A. Thumiger, F. Sparla, L. Marri, P. Trost
Date
:
29 Sep 09 (Deposition) - 09 Jun 10 (Release) - 02 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,O,Q
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: O,Q (2x)
Keywords
:
Rossmann Fold, Calvin Cycle, Chloroplast, Membrane, Nadp, Oxidoreductase, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Fermani, F. Sparla, L. Marri, A. Thumiger, P. Pupillo, G. Falini, P. Trost
Structure Of Photosynthetic Glyceraldehyde-3-Phosphate Dehydrogenase (Isoform A4) From Arabidopsis Thaliana In Complex With Nad
Acta Crystallogr. , Sect. F V. 66 621 2010
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 55)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
1c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
1d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
1e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
1f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
1g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
1h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
1i: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADi)
1j: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADj)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAD
10
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
SO4
45
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(55, 55)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:7 , PHE A:8 , GLY A:9 , ARG A:10 , ILE A:11 , ASP A:32 , THR A:33 , ARG A:77 , GLY A:95 , THR A:96 , GLY A:97 , VAL A:98 , PHE A:99 , THR A:119 , ALA A:120 , CYS A:149 , ASN A:313 , TYR A:317 , SO4 A:336 , HOH A:343 , HOH A:345
BINDING SITE FOR RESIDUE NAD A 335
02
AC2
SOFTWARE
THR A:179 , ASP A:181 , ARG A:195 , ARG A:231 , NAD A:335
BINDING SITE FOR RESIDUE SO4 A 336
03
AC3
SOFTWARE
SER A:148 , THR A:208 , GLY A:209 , ALA A:210
BINDING SITE FOR RESIDUE SO4 A 337
04
AC4
SOFTWARE
ARG A:20 , LYS A:21 , HOH A:800
BINDING SITE FOR RESIDUE SO4 A 334
05
AC5
SOFTWARE
ARG A:102 , ASP A:124 , HOH A:372 , HOH A:373
BINDING SITE FOR RESIDUE SO4 A 338
06
AC6
SOFTWARE
PHE A:251 , ALA A:252 , GLU A:253 , VAL A:299
BINDING SITE FOR RESIDUE SO4 A 339
07
AC7
SOFTWARE
GLU A:253 , ASN A:256 , ARG A:260 , HOH A:865
BINDING SITE FOR RESIDUE SO4 A 340
08
AC8
SOFTWARE
SER A:138 , HIS A:139 , HOH A:706 , HOH A:783
BINDING SITE FOR RESIDUE SO4 A 341
09
AC9
SOFTWARE
GLY B:7 , PHE B:8 , GLY B:9 , ARG B:10 , ILE B:11 , ASN B:31 , ARG B:77 , GLY B:95 , THR B:96 , GLY B:97 , PHE B:99 , THR B:119 , ALA B:120 , CYS B:149 , ASN B:313 , TYR B:317 , SO4 B:336 , HOH B:354
BINDING SITE FOR RESIDUE NAD B 335
10
BC1
SOFTWARE
THR B:179 , ASP B:181 , ARG B:195 , NAD B:335 , HOH B:874
BINDING SITE FOR RESIDUE SO4 B 336
11
BC2
SOFTWARE
SER B:148 , THR B:150 , THR B:208 , GLY B:209 , ALA B:210 , HOH B:784 , HOH B:874
BINDING SITE FOR RESIDUE SO4 B 337
12
BC3
SOFTWARE
ARG B:102 , LYS B:122A , GLY B:123 , ASP B:124
BINDING SITE FOR RESIDUE SO4 B 334
13
BC4
SOFTWARE
SER B:138 , HIS B:139 , ASP B:140 , ASN B:331
BINDING SITE FOR RESIDUE SO4 B 338
14
BC5
SOFTWARE
GLU B:253 , ASN B:256 , ARG B:260
BINDING SITE FOR RESIDUE SO4 B 339
15
BC6
SOFTWARE
GLY C:7 , PHE C:8 , GLY C:9 , ARG C:10 , ILE C:11 , ASP C:32 , THR C:33 , ARG C:77 , GLY C:95 , THR C:96 , GLY C:97 , PHE C:99 , THR C:119 , ALA C:120 , CYS C:149 , ASN C:313 , TYR C:317 , SO4 C:336 , HOH C:349 , HOH C:376
BINDING SITE FOR RESIDUE NAD C 335
16
BC7
SOFTWARE
THR C:179 , ASP C:181 , ARG C:231 , NAD C:335 , HOH C:388
BINDING SITE FOR RESIDUE SO4 C 336
17
BC8
SOFTWARE
SER C:148 , THR C:208 , GLY C:209 , ALA C:210
BINDING SITE FOR RESIDUE SO4 C 337
18
BC9
SOFTWARE
SER C:138 , HIS C:139 , ASN C:331
BINDING SITE FOR RESIDUE SO4 C 334
19
CC1
SOFTWARE
ASN C:256 , ARG C:260 , HOH C:412 , HOH C:413
BINDING SITE FOR RESIDUE SO4 C 338
20
CC2
SOFTWARE
GLY D:7 , PHE D:8 , GLY D:9 , ARG D:10 , ILE D:11 , ASP D:32 , THR D:33 , ASN D:76 , ARG D:77 , THR D:96 , GLY D:97 , THR D:119 , ALA D:120 , CYS D:149 , ASN D:313 , TYR D:317 , SO4 D:336 , HOH D:365 , HOH D:366 , HOH D:377
BINDING SITE FOR RESIDUE NAD D 335
21
CC3
SOFTWARE
THR D:179 , ASP D:181 , ARG D:231 , NAD D:335
BINDING SITE FOR RESIDUE SO4 D 336
22
CC4
SOFTWARE
SER D:148 , CYS D:149 , THR D:150 , THR D:208 , ARG D:231 , HOH D:399
BINDING SITE FOR RESIDUE SO4 D 337
23
CC5
SOFTWARE
GLU D:253 , ASN D:256 , ARG D:260
BINDING SITE FOR RESIDUE SO4 D 334
24
CC6
SOFTWARE
GLY E:7 , PHE E:8 , GLY E:9 , ARG E:10 , ILE E:11 , ASN E:31 , THR E:33 , ARG E:77 , GLY E:95 , THR E:96 , GLY E:97 , THR E:119 , ALA E:120 , CYS E:149 , THR E:179 , ASN E:313 , GLU E:314 , TYR E:317 , SO4 E:336
BINDING SITE FOR RESIDUE NAD E 335
25
CC7
SOFTWARE
THR E:179 , ASP E:181 , ARG E:195 , ARG E:231 , NAD E:335
BINDING SITE FOR RESIDUE SO4 E 336
26
CC8
SOFTWARE
SER E:148 , THR E:150 , THR E:208 , GLY E:209 , ALA E:210
BINDING SITE FOR RESIDUE SO4 E 337
27
CC9
SOFTWARE
GLU E:253 , ASN E:256 , ARG E:260 , SER E:294 , HOH E:536
BINDING SITE FOR RESIDUE SO4 E 334
28
DC1
SOFTWARE
ASP E:135 , ILE E:327 , ASN E:331
BINDING SITE FOR RESIDUE SO4 E 338
29
DC2
SOFTWARE
GLY F:7 , GLY F:9 , ARG F:10 , ILE F:11 , ASP F:32 , ARG F:77 , GLY F:95 , THR F:96 , GLY F:97 , VAL F:98 , PHE F:99 , THR F:119 , ALA F:120 , CYS F:149 , ASN F:313 , TYR F:317 , SER G:188
BINDING SITE FOR RESIDUE NAD F 335
30
DC3
SOFTWARE
THR F:179 , ASP F:181 , ARG F:195 , ARG F:231
BINDING SITE FOR RESIDUE SO4 F 336
31
DC4
SOFTWARE
SER F:148 , THR F:150 , THR F:208 , GLY F:209 , ALA F:210
BINDING SITE FOR RESIDUE SO4 F 337
32
DC5
SOFTWARE
GLU F:253 , ASN F:256 , ARG F:260 , ASP F:275
BINDING SITE FOR RESIDUE SO4 F 334
33
DC6
SOFTWARE
GLY G:7 , GLY G:9 , ARG G:10 , ILE G:11 , ASP G:32 , THR G:33 , ARG G:77 , THR G:96 , GLY G:97 , PHE G:99 , THR G:119 , ALA G:120 , CYS G:149 , THR G:179 , ASN G:313 , GLU G:314 , TYR G:317 , SO4 G:336 , HOH G:340
BINDING SITE FOR RESIDUE NAD G 335
34
DC7
SOFTWARE
THR G:179 , ASP G:181 , ARG G:195 , ARG G:231 , NAD G:335
BINDING SITE FOR RESIDUE SO4 G 336
35
DC8
SOFTWARE
SER G:148 , THR G:150 , THR G:208 , GLY G:209 , ALA G:210
BINDING SITE FOR RESIDUE SO4 G 337
36
DC9
SOFTWARE
THR G:127 , LEU G:216
BINDING SITE FOR RESIDUE SO4 G 334
37
EC1
SOFTWARE
SER G:138 , HIS G:139 , ASP G:140
BINDING SITE FOR RESIDUE SO4 G 338
38
EC2
SOFTWARE
GLU G:253 , ASN G:256 , ARG G:260 , HOH G:344 , HOH G:652
BINDING SITE FOR RESIDUE SO4 G 339
39
EC3
SOFTWARE
SER E:188 , GLY H:7 , PHE H:8 , GLY H:9 , ARG H:10 , ILE H:11 , ASP H:32 , THR H:33 , ARG H:77 , GLY H:95 , THR H:96 , GLY H:97 , VAL H:98 , THR H:119 , ALA H:120 , CYS H:149 , THR H:179 , ASN H:313 , GLU H:314 , TYR H:317 , SO4 H:336
BINDING SITE FOR RESIDUE NAD H 335
40
EC4
SOFTWARE
THR H:179 , ASP H:181 , ARG H:195 , ARG H:231 , NAD H:335
BINDING SITE FOR RESIDUE SO4 H 336
41
EC5
SOFTWARE
SER H:148 , THR H:150 , SER H:207 , THR H:208 , ALA H:210 , HOH H:861 , HOH H:862
BINDING SITE FOR RESIDUE SO4 H 337
42
EC6
SOFTWARE
GLU H:253 , ASN H:256 , ARG H:260 , SER H:294
BINDING SITE FOR RESIDUE SO4 H 334
43
EC7
SOFTWARE
GLY O:7 , PHE O:8 , GLY O:9 , ARG O:10 , ILE O:11 , ASP O:32 , THR O:33 , ARG O:77 , GLY O:95 , THR O:96 , GLY O:97 , PHE O:99 , THR O:119 , ALA O:120 , ASN O:313 , TYR O:317 , SO4 O:336 , HOH O:346 , HOH O:359 , HOH O:362 , HOH O:370 , HOH O:434 , HOH O:435 , HOH O:436 , HOH O:440
BINDING SITE FOR RESIDUE NAD O 335
44
EC8
SOFTWARE
HOH O:35 , THR O:179 , ASP O:181 , ARG O:195 , ARG O:231 , NAD O:335 , HOH O:398 , HOH O:415
BINDING SITE FOR RESIDUE SO4 O 336
45
EC9
SOFTWARE
SER O:148 , THR O:150 , THR O:208 , ALA O:210 , HOH O:397 , HOH O:407 , HOH O:857
BINDING SITE FOR RESIDUE SO4 O 337
46
FC1
SOFTWARE
GLY O:60A , GLU O:61 , THR O:62 , HOH O:375
BINDING SITE FOR RESIDUE SO4 O 334
47
FC2
SOFTWARE
ARG O:102 , LYS O:122A , GLY O:123 , ASP O:124
BINDING SITE FOR RESIDUE SO4 O 338
48
FC3
SOFTWARE
LYS C:122A , SER O:138 , HIS O:139 , ASP O:140 , LYS O:333 , HOH O:409
BINDING SITE FOR RESIDUE SO4 O 339
49
FC4
SOFTWARE
GLU O:253 , ASN O:256 , ARG O:260
BINDING SITE FOR RESIDUE SO4 O 340
50
FC5
SOFTWARE
GLY Q:7 , PHE Q:8 , GLY Q:9 , ARG Q:10 , ILE Q:11 , ASP Q:32 , THR Q:33 , ARG Q:77 , GLY Q:95 , THR Q:96 , GLY Q:97 , PHE Q:99 , THR Q:119 , ALA Q:120 , CYS Q:149 , THR Q:179 , ASN Q:313 , TYR Q:317 , SO4 Q:336 , HOH Q:346 , HOH Q:350 , HOH Q:446
BINDING SITE FOR RESIDUE NAD Q 335
51
FC6
SOFTWARE
THR Q:179 , ASP Q:181 , ARG Q:195 , ARG Q:231 , NAD Q:335
BINDING SITE FOR RESIDUE SO4 Q 336
52
FC7
SOFTWARE
SER Q:148 , THR Q:150 , THR Q:208 , GLY Q:209 , ALA Q:210 , HOH Q:467 , HOH Q:790
BINDING SITE FOR RESIDUE SO4 Q 337
53
FC8
SOFTWARE
PRO Q:126 , THR Q:127 , TYR Q:128 , ASN Q:133 , LEU Q:216 , HOH Q:462
BINDING SITE FOR RESIDUE SO4 Q 334
54
FC9
SOFTWARE
PHE Q:251 , ALA Q:252 , VAL Q:299 , HOH Q:477
BINDING SITE FOR RESIDUE SO4 Q 338
55
GC1
SOFTWARE
ARG Q:284 , HOH Q:805
BINDING SITE FOR RESIDUE SO4 Q 339
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: GAPDH (A:147-154,B:147-154,C:147-154,D:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3PA1_ARATH
211-218
10
A:147-154
B:147-154
C:147-154
D:147-154
E:147-154
F:147-154
G:147-154
H:147-154
O:147-154
Q:147-154
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(2, 20)
Info
all CATH domains
1a: CATH_3k2bA02 (A:148-313)
1b: CATH_3k2bC02 (C:148-313)
1c: CATH_3k2bD02 (D:148-313)
1d: CATH_3k2bE02 (E:148-313)
1e: CATH_3k2bF02 (F:148-313)
1f: CATH_3k2bG02 (G:148-313)
1g: CATH_3k2bH02 (H:148-313)
1h: CATH_3k2bO02 (O:148-313)
1i: CATH_3k2bQ02 (Q:148-313)
1j: CATH_3k2bB02 (B:148-313)
2a: CATH_3k2bA01 (A:1-147,A:314-333)
2b: CATH_3k2bO01 (O:1-147,O:314-333)
2c: CATH_3k2bQ01 (Q:1-147,Q:314-333)
2d: CATH_3k2bE01 (E:1-147,E:314-332)
2e: CATH_3k2bH01 (H:1-147,H:314-332)
2f: CATH_3k2bB01 (B:1-147,B:314-333)
2g: CATH_3k2bC01 (C:1-147,C:314-333)
2h: CATH_3k2bD01 (D:1-147,D:314-333)
2i: CATH_3k2bF01 (F:1-147,F:314-333)
2j: CATH_3k2bG01 (G:1-147,G:314-333)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Thale cress (Arabidopsis thaliana)
(3)
1a
3k2bA02
A:148-313
1b
3k2bC02
C:148-313
1c
3k2bD02
D:148-313
1d
3k2bE02
E:148-313
1e
3k2bF02
F:148-313
1f
3k2bG02
G:148-313
1g
3k2bH02
H:148-313
1h
3k2bO02
O:148-313
1i
3k2bQ02
Q:148-313
1j
3k2bB02
B:148-313
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Thale cress (Arabidopsis thaliana)
(15)
2a
3k2bA01
A:1-147,A:314-333
2b
3k2bO01
O:1-147,O:314-333
2c
3k2bQ01
Q:1-147,Q:314-333
2d
3k2bE01
E:1-147,E:314-332
2e
3k2bH01
H:1-147,H:314-332
2f
3k2bB01
B:1-147,B:314-333
2g
3k2bC01
C:1-147,C:314-333
2h
3k2bD01
D:1-147,D:314-333
2i
3k2bF01
F:1-147,F:314-333
2j
3k2bG01
G:1-147,G:314-333
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain O
Chain Q
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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