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(-) Description

Title :  CRYSTAL STRUCTURE OF THE 3 FKBP DOMAINS OF WHEAT FKBP73
 
Authors :  O. Dym, A. Breiman, Israel Structural Proteomics Center (Ispc)
Date :  22 Sep 09  (Deposition) - 16 Jun 10  (Release) - 21 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.28
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kbp- Binding Domain Five-Stranded Anti-Parallel -Sheet And An -Helix Crossing This Sheet, Structural Genomics, Israel Structural Proteomics Center, Ispc, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Unger, O. Dym, S. Albeck, Y. Jacobovitch, R. Bernehim, D. Marom, O. Pisanty, A. Breiman
Crystal Structure Of The Three Fk506 Binding Protein Domain Of Wheat Fkbp73: Evidence For A Unique Wfk73_2 Domain
J. Struct. Funct. Genom. V. 11 113 2010
PubMed-ID: 20306145  |  Reference-DOI: 10.1007/S10969-010-9085-8

(-) Compounds

Molecule 1 - FK506-BINDING PROTEIN (FKBP) FROM WHEAT
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonWHEAT
    Organism ScientificTRITICUM AESTIVUM
    Organism Taxid4565

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1UNK2Mod. Amino Acid
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1UNK-1Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 3JYM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JYM)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Phe A:87 -Lys A:88
2Gly A:244 -Glu A:245
3Glu B:245 -Gly B:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JYM)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FKBP_PPIASEPS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.FKB70_WHEAT60-148
 
176-265
 
293-384
 
  6A:60-148
B:60-148
A:176-265
B:176-265
A:293-384
B:293-384
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FKBP_PPIASEPS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.FKB70_WHEAT60-148
 
176-265
 
293-384
 
  3A:60-148
-
A:176-265
-
A:293-384
-
Biological Unit 2 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FKBP_PPIASEPS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.FKB70_WHEAT60-148
 
176-265
 
293-384
 
  3-
B:60-148
-
B:176-265
-
B:293-384

(-) Exons   (0, 0)

(no "Exon" information available for 3JYM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:301
 aligned with FKB70_WHEAT | Q43207 from UniProtKB/Swiss-Prot  Length:559

    Alignment length:354
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
          FKB70_WHEAT    33 GEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 386
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.----------------........eeeee..------------------..ee........hhhhhhhhh....eeeee..-------------------.eeeeeeeeee.eee......eeeeeee............eeeeeeeeee....eeeeeeeeeee.hhh..hhhhhhhhh......eeeeee.hhhh....................eeeeeeeeeee.eeee.....eeeeeee............eeeeeeeee.....eeeee.......eeee......hhhhhhhhhh.....eeeeeehhhhh.....ee...ee.....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------FKBP_PPIASE  PDB: A:60-148 UniProt: 60-148                                               ---------------------------FKBP_PPIASE  PDB: A:176-265 UniProt: 176-265                                              ---------------------------FKBP_PPIASE  PDB: A:293-384 UniProt: 293-384                                                -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jym A  33 GEENE----------------WDTPEVGDEVEVHYT------------------FKFKLGQGQVIKGWDQGIKTMKKGENALFTIP-------------------LQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKExEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 386
                                |    -         - |      62     |   -         -    |   92       102       112     |   -         -     | 142       152       162       172       182       192       202       212       222       232       242       252       262       272       282 |     292       302       312       322       332       342       352       362       372       382    
                               37               54            68                 87                            118                 138                                                                                                                                               284-UNK                                                                                                  

Chain B from PDB  Type:PROTEIN  Length:308
 aligned with FKB70_WHEAT | Q43207 from UniProtKB/Swiss-Prot  Length:559

    Alignment length:354
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382    
          FKB70_WHEAT    33 GEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 386
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKBP_C-3jymB01 B:286-381                                                                        ----- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKBP_C-3jymB02 B:286-381                                                                        ----- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKBP_C-3jymB03 B:286-381                                                                        ----- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKBP_C-3jymB04 B:286-381                                                                        ----- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKBP_C-3jymB05 B:286-381                                                                        ----- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FKBP_C-3jymB06 B:286-381                                                                        ----- Pfam domains (6)
         Sec.struct. author ....ee----------------.......eeeeeee.-----------------..ee......hhhhhhhhh......eeeeee.-------------......eeeeeeeeeee.eee......eeeeeee............eeeeeeeeee....eeeeeeeeeee.hhh..hhhhhhhhh......eeeeee.hhhh....................eeeeeeeeeee.eeee.....eeeeeee............eeeeeeeeee....eeeee.......eeee......hhhhhhhhh......eeeeeehhhhh.....ee...ee.....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------FKBP_PPIASE  PDB: B:60-148 UniProt: 60-148                                               ---------------------------FKBP_PPIASE  PDB: B:176-265 UniProt: 176-265                                              ---------------------------FKBP_PPIASE  PDB: B:293-384 UniProt: 293-384                                                -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jym B  33 GEENEI----------------DTPEVGDEVEVHYTG-----------------FKFKLGQGQVIKGWDQGIKTMKKGENALFTIP-------------IPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKExEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 386
                                 |   -         -  |     62      |  -         -    |   92       102       112     |   -       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282 |     292       302       312       322       332       342       352       362       372       382    
                                38               55            69                87                            118           132                                                                                                                                                     284-UNK                                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JYM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JYM)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Family: FKBP_C (58)
1aFKBP_C-3jymB01B:286-381
1bFKBP_C-3jymB02B:286-381
1cFKBP_C-3jymB03B:286-381
1dFKBP_C-3jymB04B:286-381
1eFKBP_C-3jymB05B:286-381
1fFKBP_C-3jymB06B:286-381

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (FKB70_WHEAT | Q43207)
molecular function
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FKB70_WHEAT | Q432073jxv

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