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(-) Description

Title :  CRYSTAL STRUCTURE OF THE 3 FKBP DOMAINS OF WHEAT FKBP73
 
Authors :  O. Dym, A. Breiman, Israel Structural Proteomics Center (Ispc)
Date :  21 Sep 09  (Deposition) - 16 Jun 10  (Release) - 30 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym./Biol. Unit :  A
Keywords :  Fkbp- Binding Domain Five-Stranded Anti-Parallel Beta-Sheet And An Alpha-Helix Crossing This Sheet, Structural Genomics, Israel Structural Proteomics Center, Ispc, Calmodulin-Binding, Isomerase, Rotamase, Stress Response, Tpr Repeat (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Unger, O. Dym, S. Albeck, Y. Jacobovitch, R. Bernehim, D. Marom, O. Pisanty, A. Breiman
Crystal Structure Of The Three Fk506 Binding Protein Domains Of Wheat Fkbp73: Evidence For A Unique Wfk73_2 Domain.
J Struct Funct Genomics V. 11 113 2010
PubMed-ID: 20306145  |  Reference-DOI: 10.1007/S10969-010-9085-8

(-) Compounds

Molecule 1 - 70 KDA PEPTIDYL-PROLYL ISOMERASE
    Chains: A
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FKBP70
    Organism Common: WHEAT
    Organism Scientific: TRITICUM AESTIVUM
    Organism Taxid: 4565
    Synonym: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, PPIASE, ROTAMASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1UNK1Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 3JXV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JXV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3JXV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JXV)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FKBP_PPIASEPS50059 FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.FKB70_WHEAT60-148
176-265
293-384		  2-
A:176-265
A:293-384

(-) Exons   (0, 0)

(no "Exon" information available for 3JXV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
 aligned with FKB70_WHEAT | Q43207 from UniProtKB/Swiss-Prot  Length:559

    Alignment length:239
                                   157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377         
          FKB70_WHEAT   148 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 386
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------FKBP_C-3jxvA01 A:286-381                                                                        ----- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------FKBP_C-3jxvA02 A:286-381                                                                        ----- Pfam domains (2)
         Sec.struct. author ..eee......eeeeeee............eeeeeeeeee....eeeeeeeeeee.hhh..hhhhhhhhh......eeeeee.hhhh..........--........eeeeeeeeeee.eeee.....eeeeeee............eeeeeeeeee....eeeee........eee......hhhhhhhhh......eeeeeehhhhh.....ee...ee.....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE F---------------------------FKBP_PPIASE  PDB: A:176-265 UniProt: 176-265                                              ---------------------------FKBP_PPIASE  PDB: A:293-384 UniProt: 293-384                                                -- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jxv A 148 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAG--GAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKExEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 386
                                   157       167       177       187       197       207       217       227       237      |247       257       267       277      |287       297       307       317       327       337       347       357       367       377         
                                                                                                                          244  |                                  284-UNK                                                                                                  
                                                                                                                             247
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JXV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JXV)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: FKBP_C] (58)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FKB70_WHEAT | Q43207)
molecular function
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0003755    peptidyl-prolyl cis-trans isomerase activity    Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0000413    protein peptidyl-prolyl isomerization    The modification of a protein by cis-trans isomerization of a proline residue.

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        FKB70_WHEAT | Q43207: 3jym

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