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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LIPOPROTEIN_17 DOMAIN FROM Q9PRA0_UREPA PROTEIN OF UREAPLASMA PARVUM. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET UUR17A.
 
Authors :  S. Vorobiev, H. Neely, D. Lee, C. Ciccosanti, L. Mao, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  16 Sep 09  (Deposition) - 29 Sep 09  (Release) - 29 Sep 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Lipoprotein-17, Q9Pra0, Pf04200, Duf1976, Uur17A, Nesg. , Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Lipoprotein, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, H. Neely, D. Lee, C. Ciccosanti, L. Mao, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Lipoprotein_17 Domain From Q9Pra0_urepa Protein Of Ureaplasma Parvum.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL MEMBRANE LIPOPROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET 21-23C
    Expression System Strain: BL21 (DE3) +MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: UU045
    Organism Common: UREAPLASMA UREALYTICUM BIOTYPE 1
    Organism Scientific: UREAPLASMA PARVUM SEROVAR 3 STR. ATCC 700970
    Organism Taxid: 273119
    Strain: ATCC 700970 / SEROVAR 3

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3JVC)

(-) Sites  (0, 0)

(no "Site" information available for 3JVC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JVC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3JVC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JVC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JVC)

(-) Exons   (0, 0)

(no "Exon" information available for 3JVC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with MALP_UREPA | Q9PRA0 from UniProtKB/Swiss-Prot  Length:834

    Alignment length:116
                                   144       154       164       174       184       194       204       214       224       234       244      
           MALP_UREPA   135 FKKIVNNIRLKDTFDFKLAAFPNQNYDQLLPSQIYKNYYQGIEIQQHKYQNELDIKIINFLYPDGDFGSANKNGTLKLSLMLTDKKNNQVYYKLLEVSGFKSNPYGVDENGTIPGI 250
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.......eeeee......hhhhhhhhhhhhhhhh.eeeee......eeeeeeeee....hhhhhhhhh.eeeeeeeee.....eeeeeeee................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3jvc A 135 FKKIVNNIRLKDTFDFKLAAFPNQNYDQLLPSQIYKNYYQGIEIQQHKYQNELDIKIINFLYPDGDFGSANKNGTLKLSLMLTDKKNNQVYYKLLEVSGFKSNPYGVDENGTIPGL 250
                                   144       154       164       174       184       194       204       214       224       234       244      


Chain B from PDB  Type:PROTEIN  Length:112
 aligned with MALP_UREPA | Q9PRA0 from UniProtKB/Swiss-Prot  Length:834

    Alignment length:116
                                   144       154       164       174       184       194       204       214       224       234       244      
           MALP_UREPA   135 FKKIVNNIRLKDTFDFKLAAFPNQNYDQLLPSQIYKNYYQGIEIQQHKYQNELDIKIINFLYPDGDFGSANKNGTLKLSLMLTDKKNNQVYYKLLEVSGFKSNPYGVDENGTIPGI 250
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeee...........hhhhhhhhh...eeeee.......eeeeeeee....hhhhhhhhh.eeeeeeee..----.eeeeeee................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3jvc B 135 FKKIVNNIRLKDTFDFKLAAFPNQNYDQLLPSQIYKNYYQGIEIQQHKYQNELDIKIINFLYPDGDFGSANKNGTLKLSLMLTDK----VYYKLLEVSGFKSNPYGVDENGTIPGL 250
                                   144       154       164       174       184       194       204       214    |  224       234       244      
                                                                                                              219  224                          


Chain C from PDB  Type:PROTEIN  Length:109
 aligned with MALP_UREPA | Q9PRA0 from UniProtKB/Swiss-Prot  Length:834

    Alignment length:112
                                   144       154       164       174       184       194       204       214       224       234       244  
           MALP_UREPA   135 FKKIVNNIRLKDTFDFKLAAFPNQNYDQLLPSQIYKNYYQGIEIQQHKYQNELDIKIINFLYPDGDFGSANKNGTLKLSLMLTDKKNNQVYYKLLEVSGFKSNPYGVDENGT 246
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeee......hhhhhhhhhhhhhhhh.eeeee.......eeeeeeee....hhhhhhhhh.eeeeeeee.---..eeeeeeee............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3jvc C 135 FKKIVNNIRLKDTFDFKLAAFPNQNYDQLLPSQIYKNYYQGIEIQQHKYQNELDIKIINFLYPDGDFGSANKNGTLKLSLMLTD---NQVYYKLLEVSGFKSNPYGVDENGT 246
                                   144       154       164       174       184       194       204       214   |   224       234       244  
                                                                                                             218 222
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JVC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JVC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3JVC)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (MALP_UREPA | Q9PRA0)
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

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        MALP_UREPA | Q9PRA0: 2krt 3k63

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