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Title :   CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF YPBH

Authors :   F. Wang, Z. Mei, Y. Qi, C. Yan, J. Wang, Y. Shi

Date :   14 Sep 09 (Deposition) - 29 Sep 09 (Release) - 29 Sep 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Ypbh, Adaptor Protein, Competence, Sporulation, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Wang, Z. Mei, Y. Qi, C. Yan, S. Xiang, Z. Zhou, Q. Hu, J. Wang, Y. Shi
Crystal Structure Of The Meca Degradation Tag
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - ADAPTER PROTEIN MECA 2
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL DOMAIN, UNP RESIDUES 101-194
	Gene	:	YPBH
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423
	Synonym	:	YPBH

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3JTO)

(no "Site" information available for 3JTO)

(no "SS Bond" information available for 3JTO)

(no "Cis Peptide Bond" information available for 3JTO)

(no "SAP(SNP)/Variant" information available for 3JTO)

(no "PROSITE Motif" information available for 3JTO)

(no "Exon" information available for 3JTO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:94
 aligned with MECA2_BACSU | P50734 from UniProtKB/Swiss-Prot  Length:194

    Alignment length:94
                                   110       120       130       140       150       160       170       180       190    
          MECA2_BACSU   101 DESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS 194
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhh.....eeeee..eeeeeeeeehhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 3jto A   1 DESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS  94
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:90
 aligned with MECA2_BACSU | P50734 from UniProtKB/Swiss-Prot  Length:194

    Alignment length:90
                                   113       123       133       143       153       163       173       183       193
          MECA2_BACSU   104 ADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHF 193
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhhhhhh....eeeee..eeeeee......hhhhhhhhhhhhhee...hhhhhhhhheeee..hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 3jto B   4 ADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHF  93
                                    13        23        33        43        53        63        73        83        93

Chain C from PDB  Type:PROTEIN  Length:92
 aligned with MECA2_BACSU | P50734 from UniProtKB/Swiss-Prot  Length:194

    Alignment length:92
                                   112       122       132       142       152       162       172       182       192  
          MECA2_BACSU   103 SADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS 194
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhhhhhhhhhhhh.....eeeee..eeeeeeeeehhhhhhhhhhhhhh..ee...hhhhhhhhheeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 3jto C   3 SADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS  94
                                    12        22        32        42        52        62        72        82        92

Chain D from PDB  Type:PROTEIN  Length:94
 aligned with MECA2_BACSU | P50734 from UniProtKB/Swiss-Prot  Length:194

    Alignment length:94
                                   110       120       130       140       150       160       170       180       190    
          MECA2_BACSU   101 DESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS 194
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhh.....eeeee..eeeeeeeeehhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 3jto D   1 DESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS  94
                                    10        20        30        40        50        60        70        80        90

Chain E from PDB  Type:PROTEIN  Length:89
 aligned with MECA2_BACSU | P50734 from UniProtKB/Swiss-Prot  Length:194

    Alignment length:89
                                   115       125       135       145       155       165       175       185         
          MECA2_BACSU   106 IIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS 194
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhh......eeee....eeee.......hhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 3jto E   6 IIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTHFS  94
                                    15        25        35        45        55        65        75        85

Chain F from PDB  Type:PROTEIN  Length:91
 aligned with MECA2_BACSU | P50734 from UniProtKB/Swiss-Prot  Length:194

    Alignment length:91
                                   111       121       131       141       151       161       171       181       191 
          MECA2_BACSU   102 ESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTH 192
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) MecA-3jtoF01 F:2-91                                                                       - Pfam domains (1)
           Pfam domains (2) MecA-3jtoF02 F:2-91                                                                       - Pfam domains (2)
           Pfam domains (3) MecA-3jtoF03 F:2-91                                                                       - Pfam domains (3)
           Pfam domains (4) MecA-3jtoF04 F:2-91                                                                       - Pfam domains (4)
           Pfam domains (5) MecA-3jtoF05 F:2-91                                                                       - Pfam domains (5)
           Pfam domains (6) MecA-3jtoF06 F:2-91                                                                       - Pfam domains (6)
         Sec.struct. author ....eeeee.hhhhhhhhhhhhhh......eeeee..eeeeee...hhhhhhhhhhhhh...ee...hhhhhhhhheeee..hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 3jto F   2 ESADIIYQFHSFEDIIQLSESLQRIGITGGTVYHYDGQYFLSLEDLGSHTAEGVVAVLAEYGNPTTLTIYRLQEYGKLIMDGNAVETIQTH  92
                                    11        21        31        41        51        61        71        81        91

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3JTO)

(no "CATH Domain" information available for 3JTO)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: MecA] (5)

Family: MecA (5)

Bacillus subtilis (5)

1a	MecA-3jtoF01	F:2-91
1b	MecA-3jtoF02	F:2-91
1c	MecA-3jtoF03	F:2-91
1d	MecA-3jtoF04	F:2-91
1e	MecA-3jtoF05	F:2-91
1f	MecA-3jtoF06	F:2-91

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (MECA2_BACSU | P50734)

molecular function
	GO:0030674	protein binding, bridging	The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
biological process
	GO:0030420	establishment of competence for transformation	The process in which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation.
	GO:0045808	negative regulation of establishment of competence for transformation	Any process that stops, prevents, or reduces the frequency, rate or extent of establishment of competence for transformation.
	GO:0042174	negative regulation of sporulation resulting in formation of a cellular spore	Any process that stops, prevents, or reduces the frequency, rate or extent of sporulation.
	GO:0030435	sporulation resulting in formation of a cellular spore	The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.

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