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(-) Description

Title :  CRYO-ELECTRON MICROSCOPY STRUCTURE OF RAG PAIRED COMPLEX (WITH NBD, NO SYMMETRY)
 
Authors :  H. Ru, M. G. Chambers, T. -M. Fu, A. B. Tong, M. Liao, H. Wu
Date :  21 Oct 15  (Deposition) - 09 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.63
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Rag1, Rag2, V(D)J Recombination, Paired Complex, Antigen Receptor Gene Recombination, T And B Cell Development, Recombination-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Ru, M. G. Chambers, T. M. Fu, A. B. Tong, M. Liao, H. Wu
Molecular Mechanism Of V(D)J Recombination From Synaptic Rag1-Rag2 Complex Structures.
Cell(Cambridge, Mass. ) V. 163 1138 2015
PubMed-ID: 26548953  |  Reference-DOI: 10.1016/J.CELL.2015.10.055

(-) Compounds

Molecule 1 - V(D)J RECOMBINATION-ACTIVATING PROTEIN 1
    Cell: B AND T LYMPHOCYTE
    Chains: A, C
    EC Number: 3.1.-.-, 6.3.2.-
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC1
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: RAG1
    Organelle: NUCLEUS
    Organism Common: ZEBRA FISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955
    Strain: AB
    Synonym: RAG-1, ENDONUCLEASE RAG1, E3 UBIQUITIN-PROTEIN LIGASE RAG1
 
Molecule 2 - V(D)J RECOMBINATION-ACTIVATING PROTEIN 2
    Cell: B AND T LYMPHOCYTE
    Chains: B, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC1
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: RAG2, RAG-2
    Organelle: NUCLEUS
    Organism Common: ZEBRA FISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955
    Strain: AB
    Synonym: RAG-2
 
Molecule 3 - 12-RSS SIGNAL END FORWARD STRAND
    Chains: E
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 4 - NICKED 12-RSS INTERMEDIATE REVERSE STRAND
    Chains: F
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 5 - NICKED 23-RSS INTERMEDIATE REVERSE STRAND
    Chains: G
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 6 - NICKED 23-RSS INTERMEDIATE FORWARD STRAND
    Chains: H
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 7 - 5'-D(P*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3'
    Chains: I, J
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CODING END DNA FORWARD STRAND
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:749 , CYS A:752 , HIS A:959 , HIS A:964BINDING SITE FOR RESIDUE ZN A 1101
2AC2SOFTWARECYS C:749 , CYS C:752 , HIS C:959 , HIS C:964BINDING SITE FOR RESIDUE ZN C 1101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JBW)

(-) Cis Peptide Bonds  (37, 37)

Asymmetric/Biological Unit
No.Residues
1Gly A:476 -Arg A:477
2Phe A:479 -Gly A:480
3Gly A:512 -Arg A:513
4Gln A:539 -Pro A:540
5Gly A:632 -Pro A:633
6Leu A:653 -Glu A:654
7Ala A:742 -Ser A:743
8Arg A:999 -Gln A:1000
9Asp B:84 -Gly B:85
10Pro B:87 -Glu B:88
11His B:93 -Gly B:94
12Arg B:114 -Gly B:115
13Gly B:115 -Cys B:116
14Gly B:131 -Asp B:132
15Arg B:148 -Gly B:149
16Glu B:188 -Phe B:189
17Leu B:242 -Gly B:243
18Asn B:336 -Pro B:337
19Pro B:339 -Pro B:340
20Gly C:476 -Arg C:477
21Gly C:478 -Phe C:479
22Gly C:512 -Arg C:513
23Gln C:539 -Pro C:540
24Gly C:632 -Pro C:633
25Leu C:653 -Glu C:654
26Arg C:999 -Gln C:1000
27Asp D:84 -Gly D:85
28Pro D:87 -Glu D:88
29His D:93 -Gly D:94
30Arg D:114 -Gly D:115
31Gly D:115 -Cys D:116
32Gly D:131 -Asp D:132
33Arg D:148 -Gly D:149
34Glu D:188 -Phe D:189
35Leu D:242 -Gly D:243
36Asn D:336 -Pro D:337
37Pro D:339 -Pro D:340

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JBW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JBW)

(-) Exons   (0, 0)

(no "Exon" information available for 3JBW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:622
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhh........hhhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhh...........eeee..............ee.................eee.hhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeeeeeeee................eeeeeeeeeeeee........eeeee..........eeeeeee....hhhhhhhhhhhhhhhhhhhhhheeeeee..eeeeeeeeeee...hhhhhhhhh................hhhhhhhh........hhhhhhhhhhhhhhh....hhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3jbw A  408 GGRPRQHLLSLTRRAQKHRLRDLKNQVKTFAEKEEGGDVKSVCLTLFLLALRAGNEHKQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKELLPGFHQFEWQPALKNVSTSWDVGIIDGLSGWTVSVDDVPADTISRRFRYDVALVSALKDLEEDIMEGLRERALDDSMCTSGFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTIMSISIRLEGEDDGITIFQEQKPNSELSCRPLCLMFVDESDHETLTAILGPVVAERKAMMESRLIISVGGLLRSFRFFFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSHDENLERYEIWRKNPFSESADELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKIFQDEIGEVYQKPNPSREERRRWRSTLDKQLRKKMKLKPVMRMNGNYARRLMTREAVEAVCELVPSEERREALLKLMDLYLQMKPVWRSTCPSRDCPDQLCQYSYNSQQFADLLSSMFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSKTFELEDILKHHWLYTSKYLQKFMEAHK 1029
                                   417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027  


Chain B from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.............eeee....eeee.............eeeeeee..eeeeee.ee.............eeeee........eeeee.............eeeeeee.......eeeeee..............eeeeeee..eeeeeee..eee.............eee....eeeee.....eeee.............eeee..eeee...............eeeeeeee..eeeeeeee...........eee.....eee..............eeeee....eeeee......hhhhhhh...eeeeee..eeeeeee..........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3jbw B    1 MSLQPLTAVNCGSLVQPGFSLLDLEGDVYLFGQKGWPKRSCPTGIFGVRIKKGELKLRAISFSNNSSYLPPLRCPAIAHFEAQDGKPECYLIHGGRTPNNELSSSLYMLSVDSRGCNRKVTLRCEEKELVGDVPSARYGHTLSVINSRGKTACVLFGGRSYMPPTERTTQNWNSVVDCPPQVYLIDLEFGCCTAHTLPELTDGQSFHVALARQDCVYFLGGHILSSDCRPSRLIRLHVELLLGSPVLTCTILHEGLTITSAIASPIGYHEYIIFGGYQSETQKRMECTYVGLDDVGVHMESREPPQWTSEISHSRTWFGGSLGKGTALVAIPSEGNPTPPEAYHFYQVSFQ  351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350 


Chain C from PDB  Type:PROTEIN  Length:622
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhh........hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.......hhhhhhh...........eeee..............ee.................eee.hhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeeeeeeee................eeeeeeeeeeeee........eeeee..........eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeeeeeeee...hhhhhhhhh..................hhhhhh........hhhhhhhhhhhhhhh....hhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3jbw C  408 GGRPRQHLLSLTRRAQKHRLRDLKNQVKTFAEKEEGGDVKSVCLTLFLLALRAGNEHKQADELEAMMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKELLPGFHQFEWQPALKNVSTSWDVGIIDGLSGWTVSVDDVPADTISRRFRYDVALVSALKDLEEDIMEGLRERALDDSMCTSGFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTIMSISIRLEGEDDGITIFQEQKPNSELSCRPLCLMFVDESDHETLTAILGPVVAERKAMMESRLIISVGGLLRSFRFFFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSHDENLERYEIWRKNPFSESADELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKIFQDEIGEVYQKPNPSREERRRWRSTLDKQLRKKMKLKPVMRMNGNYARRLMTREAVEAVCELVPSEERREALLKLMDLYLQMKPVWRSTCPSRDCPDQLCQYSYNSQQFADLLSSMFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSKTFELEDILKHHWLYTSKYLQKFMEAHK 1029
                                   417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027  


Chain D from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.............eeee....eeee.............eeeeeee..eeeeee................eeeee........eeeee..ee...ee...eeeeeeee.......eeeeeee.............eeeeeee..eeeeeee..eee.............eee...eeeeee.....eeeee............eeee..eeee..............eeeeee........eeeeee..........eee.....eee.............eeeeee....eeeeee.....hhhhhhh...eeeeee..eeeeeee..........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3jbw D    1 MSLQPLTAVNCGSLVQPGFSLLDLEGDVYLFGQKGWPKRSCPTGIFGVRIKKGELKLRAISFSNNSSYLPPLRCPAIAHFEAQDGKPECYLIHGGRTPNNELSSSLYMLSVDSRGCNRKVTLRCEEKELVGDVPSARYGHTLSVINSRGKTACVLFGGRSYMPPTERTTQNWNSVVDCPPQVYLIDLEFGCCTAHTLPELTDGQSFHVALARQDCVYFLGGHILSSDCRPSRLIRLHVELLLGSPVLTCTILHEGLTITSAIASPIGYHEYIIFGGYQSETQKRMECTYVGLDDVGVHMESREPPQWTSEISHSRTWFGGSLGKGTALVAIPSEGNPTPPEAYHFYQVSFQ  351
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350 


Chain E from PDB  Type:DNA  Length:34
                                                                   
                3jbw E    1 CACAGTGCTACAGACTGGAACAAAAACCCTGCAG   34
                                    10        20        30    


Chain F from PDB  Type:DNA  Length:50
                                                                                   
                3jbw F    1 CTGCAGGGTTTTTGTTCCAGTCTGTAGCACTGTGTAAGACAGGCCAGATC   50
                                    10        20        30        40        50


Chain G from PDB  Type:DNA  Length:61
                                                                                              
                3jbw G    1 CTGCAGGGTTTTTGTACAGCCAGACAGTGGAGTACTACCACTGTGTAAGACAGGCCAGATC   61
                                    10        20        30        40        50        60 


Chain H from PDB  Type:DNA  Length:45
                                                                              
                3jbw H    1 CACAGTGGTAGTACTCCACTGTCTGGCTGTACAAAAACCCTGCAG   45
                                    10        20        30        40     


Chain I from PDB  Type:DNA  Length:16
                                                 
                3jbw I    1 GATCTGGCCTGTCTTA   16
                                    10      


Chain J from PDB  Type:DNA  Length:16
                                                 
                3jbw J    1 GATCTGGCCTGTCTTA   16
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JBW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JBW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3JBW)

(-) Gene Ontology  (31, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:742 - Ser A:743   [ RasMol ]  
    Arg A:999 - Gln A:1000   [ RasMol ]  
    Arg B:114 - Gly B:115   [ RasMol ]  
    Arg B:148 - Gly B:149   [ RasMol ]  
    Arg C:999 - Gln C:1000   [ RasMol ]  
    Arg D:114 - Gly D:115   [ RasMol ]  
    Arg D:148 - Gly D:149   [ RasMol ]  
    Asn B:336 - Pro B:337   [ RasMol ]  
    Asn D:336 - Pro D:337   [ RasMol ]  
    Asp B:84 - Gly B:85   [ RasMol ]  
    Asp D:84 - Gly D:85   [ RasMol ]  
    Gln A:539 - Pro A:540   [ RasMol ]  
    Gln C:539 - Pro C:540   [ RasMol ]  
    Glu B:188 - Phe B:189   [ RasMol ]  
    Glu D:188 - Phe D:189   [ RasMol ]  
    Gly A:476 - Arg A:477   [ RasMol ]  
    Gly A:512 - Arg A:513   [ RasMol ]  
    Gly A:632 - Pro A:633   [ RasMol ]  
    Gly B:115 - Cys B:116   [ RasMol ]  
    Gly B:131 - Asp B:132   [ RasMol ]  
    Gly C:476 - Arg C:477   [ RasMol ]  
    Gly C:478 - Phe C:479   [ RasMol ]  
    Gly C:512 - Arg C:513   [ RasMol ]  
    Gly C:632 - Pro C:633   [ RasMol ]  
    Gly D:115 - Cys D:116   [ RasMol ]  
    Gly D:131 - Asp D:132   [ RasMol ]  
    His B:93 - Gly B:94   [ RasMol ]  
    His D:93 - Gly D:94   [ RasMol ]  
    Leu A:653 - Glu A:654   [ RasMol ]  
    Leu B:242 - Gly B:243   [ RasMol ]  
    Leu C:653 - Glu C:654   [ RasMol ]  
    Leu D:242 - Gly D:243   [ RasMol ]  
    Phe A:479 - Gly A:480   [ RasMol ]  
    Pro B:339 - Pro B:340   [ RasMol ]  
    Pro B:87 - Glu B:88   [ RasMol ]  
    Pro D:339 - Pro D:340   [ RasMol ]  
    Pro D:87 - Glu D:88   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q1RLW7_DANRE | Q1RLW7: 3jbx 3jby
        RAG1_DANRE | O13033: 3jbx 3jby
        RAG2_DANRE | O13034: 3jbx 3jby

(-) Related Entries Specified in the PDB File

3jbx 3jby