3J0A - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   HOMOLOGY MODEL OF HUMAN TOLL-LIKE RECEPTOR 5 FITTED INTO AN ELECTRON MICROSCOPY SINGLE PARTICLE RECONSTRUCTION

Authors :   Y. Modis, K. Zhou, R. Kanai, P. Lee, H. W. Wang

Date :   02 Jun 11 (Deposition) - 28 Dec 11 (Release) - 07 Mar 12 (Revision)

Method :   ELECTRON MICROSCOPY

Resolution :   26.00

Chains :   Asym./Biol. Unit : A,B

Keywords :   Toll-Like Receptor 5, Membrane Protein, Leucine-Rich Repeat, Asymmetric Homodimer, Glycoprotein, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Zhou, R. Kanai, P. Lee, H. W. Wang, Y. Modis
Toll-Like Receptor 5 Forms Asymmetric Dimers In The Absence Of Flagellin.
J. Struct. Biol. V. 177 402 2012
PubMed-ID: 22173220 | Reference-DOI: 10.1016/J.JSB.2011.12.002

Molecule 1 - TOLL-LIKE RECEPTOR 5
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Plasmid	:	PACGP67-A
	Expression System Strain	:	SF9
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	MATURE GLYCOPROTEIN (UNP RESIDUES 23-858)
	Gene	:	TIL3, TLR5
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TOLL/INTERLEUKIN-1 RECEPTOR-LIKE PROTEIN 3

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 28)

No.	Name	Count	Type	Full Name
1	FUC	14	Ligand/Ion	ALPHA-L-FUCOSE
2	NAG	14	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:36 , ASN A:37 , GLN A:43 , FUC A:1038	BINDING SITE FOR RESIDUE NAG A 1037
02	AC2	SOFTWARE	CYS A:36 , LEU A:38 , NAG A:1037	BINDING SITE FOR RESIDUE FUC A 1038
03	AC3	SOFTWARE	ASN A:46 , FUC A:2047	BINDING SITE FOR RESIDUE NAG A 2046
04	AC4	SOFTWARE	GLU A:70 , NAG A:2046	BINDING SITE FOR RESIDUE FUC A 2047
05	AC5	SOFTWARE	SER A:213 , TRP A:216 , ILE A:242 , ASN A:245 , FUC A:1246	BINDING SITE FOR RESIDUE NAG A 1245
06	AC6	SOFTWARE	NAG A:1245	BINDING SITE FOR RESIDUE FUC A 1246
07	AC7	SOFTWARE	ASN A:318 , VAL A:340 , ASN A:342 , TYR A:364 , FUC A:1343	BINDING SITE FOR RESIDUE NAG A 1342
08	AC8	SOFTWARE	ALA A:320 , NAG A:1342	BINDING SITE FOR RESIDUE FUC A 1343
09	AC9	SOFTWARE	ASN A:422 , FUC A:1423	BINDING SITE FOR RESIDUE NAG A 1422
10	BC1	SOFTWARE	NAG A:1422	BINDING SITE FOR RESIDUE FUC A 1423
11	BC2	SOFTWARE	ASN A:595 , LEU A:624 , FUC A:1596	BINDING SITE FOR RESIDUE NAG A 1595
12	BC3	SOFTWARE	NAG A:1595	BINDING SITE FOR RESIDUE FUC A 1596
13	BC4	SOFTWARE	HIS A:596 , THR A:597 , ASN A:598 , FUC A:2599	BINDING SITE FOR RESIDUE NAG A 2598
14	BC5	SOFTWARE	NAG A:2598	BINDING SITE FOR RESIDUE FUC A 2599
15	BC6	SOFTWARE	CYS B:36 , ASN B:37 , VAL B:41 , GLN B:43 , FUC B:1038	BINDING SITE FOR RESIDUE NAG B 1037
16	BC7	SOFTWARE	CYS B:36 , TYR B:57 , NAG B:1037	BINDING SITE FOR RESIDUE FUC B 1038
17	BC8	SOFTWARE	LEU B:45 , ASN B:46 , FUC B:2047	BINDING SITE FOR RESIDUE NAG B 2046
18	BC9	SOFTWARE	GLU B:70 , NAG B:2046	BINDING SITE FOR RESIDUE FUC B 2047
19	CC1	SOFTWARE	VAL B:212 , SER B:213 , ILE B:242 , ASN B:245 , FUC B:1246	BINDING SITE FOR RESIDUE NAG B 1245
20	CC2	SOFTWARE	TRP B:216 , NAG B:1245	BINDING SITE FOR RESIDUE FUC B 1246
21	CC3	SOFTWARE	VAL B:340 , ASN B:342 , TYR B:364 , FUC B:1343	BINDING SITE FOR RESIDUE NAG B 1342
22	CC4	SOFTWARE	NAG B:1342	BINDING SITE FOR RESIDUE FUC B 1343
23	CC5	SOFTWARE	ILE B:402 , ASN B:422 , FUC B:1423	BINDING SITE FOR RESIDUE NAG B 1422
24	CC6	SOFTWARE	NAG B:1422	BINDING SITE FOR RESIDUE FUC B 1423
25	CC7	SOFTWARE	ASN B:592 , ASN B:595 , LEU B:624 , FUC B:1596	BINDING SITE FOR RESIDUE NAG B 1595
26	CC8	SOFTWARE	ASN B:592 , HIS B:596 , NAG B:1595	BINDING SITE FOR RESIDUE FUC B 1596
27	CC9	SOFTWARE	HIS B:596 , THR B:597 , ASN B:598 , FUC B:2599	BINDING SITE FOR RESIDUE NAG B 2598
28	DC1	SOFTWARE	NAG B:2598	BINDING SITE FOR RESIDUE FUC B 2599

Asymmetric/Biological Unit

No.	Residues
1	A:583	-	A:610
2	A:585	-	A:629
3	B:583	-	B:610
4	B:585	-	B:629

(no "Cis Peptide Bond" information available for 3J0A)

Asymmetric/Biological Unit (9, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_032455	T	82	I	TLR5_HUMAN	Polymorphism	764535	A/B	T	82	I
2	UniProt	VAR_032456	P	112	A	TLR5_HUMAN	Polymorphism	5744166	A/B	P	112	A
3	UniProt	VAR_061856	N	143	T	TLR5_HUMAN	Polymorphism	5744167	A/B	N	143	T
4	UniProt	VAR_061857	Q	181	K	TLR5_HUMAN	Polymorphism	45528236	A/B	Q	181	K
5	UniProt	VAR_018399	N	592	S	TLR5_HUMAN	Polymorphism	2072493	A/B	N	592	S
6	UniProt	VAR_018400	F	616	L	TLR5_HUMAN	Polymorphism	5744174	A/B	F	616	L
7	UniProt	VAR_070457	I	644	F	TLR5_HUMAN	Polymorphism	5744175	A/B	I	644	F
8	UniProt	VAR_061858	L	769	F	TLR5_HUMAN	Polymorphism	56243703	A	L	769	F
9	UniProt	VAR_047454	F	822	L	TLR5_HUMAN	Polymorphism	7512943	A	F	822	L

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (2, 25)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LRR	PS51450	Leucine-rich repeat profile.	TLR5_HUMAN	96-117 146-167 171-192 313-334 337-358 385-406 422-445 449-470 474-494 503-524 527-547 549-570	24	A:96-117 B:96-117 A:146-167 B:146-167 A:171-192 B:171-192 A:313-334 B:313-334 A:337-358 B:337-358 A:385-406 B:385-406 A:422-445 B:422-445 A:449-470 B:449-470 A:474-494 B:474-494 A:503-524 B:503-524 A:527-547 B:527-547 A:549-570 B:549-570
2	TIR	PS50104	TIR domain profile.	TLR5_HUMAN	691-827	1	A:691-827

Asymmetric/Biological Unit (1, 2)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000366881	1a	ENSE00001442886	chr1:223316624-223316538	87	TLR5_HUMAN	-	0	0	-	-
1.2a	ENST00000366881	2a	ENSE00001442885	chr1:223315105-223314990	116	TLR5_HUMAN	-	0	0	-	-
1.3b	ENST00000366881	3b	ENSE00001442884	chr1:223310605-223310520	86	TLR5_HUMAN	-	0	0	-	-
1.4	ENST00000366881	4	ENSE00001377361	chr1:223308206-223308024	183	TLR5_HUMAN	-	0	0	-	-
1.6	ENST00000366881	6	ENSE00001382825	chr1:223305981-223305817	165	TLR5_HUMAN	-	0	0	-	-
1.7b	ENST00000366881	7b	ENSE00001442883	chr1:223286377-223283647	2731	TLR5_HUMAN	1-860	860	2	A:23-845 (gaps) B:23-664 (gaps)	823 642

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:797
 aligned with TLR5_HUMAN | O60602 from UniProtKB/Swiss-Prot  Length:858

    Alignment length:823
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842   
           TLR5_HUMAN    23 SCSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQILKKEKEKKK 845
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee................eeeee.....ee............eeee.......ee............eee.......ee.............ee.......................eeeee.........hhhhhh.....eeeee........hhhhhhhhhh.....ee........................................hhhhhh.......eee................hhhhh...........eee.......ee............eeeee.....ee............eeeee...................eee.....................eeeee..............eeeee...............eee..........hhhhhh......eeeee......................eee......................ee....hhhhhh..............eeeee.................eeeeeee..............eeeeeee.........hhhhhhhhh......hhhhh.....................----------hhhhhhhhhhhhhhhhh..hhhhhh----------------..hhhhh.......eeee....hhhhhhhhhhhhhhh.........ee..........hhhhhhhhhhhhh.eeeeee..hhhhhh..hhhhhhhhh.........eeeee...............hhhhhh.............hhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------I-----------------------------A------------------------------T-------------------------------------K--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-----------------------L---------------------------F----------------------------------------------------------------------------------------------------------------------------F----------------------------------------------------L----------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------LRR  PDB: A:96-117    ----------------------------LRR  PDB: A:146-167   ---LRR  PDB: A:171-192   ------------------------------------------------------------------------------------------------------------------------LRR  PDB: A:313-334   --LRR  PDB: A:337-358   --------------------------LRR  PDB: A:385-406   ---------------LRR  PDB: A:422-445     ---LRR  PDB: A:449-470   ---LRR  PDB: A:474-494  --------LRR  PDB: A:503-524   --LRR  PDB: A:527-547  -LRR  PDB: A:549-570   ------------------------------------------------------------------------------------------------------------------------TIR  PDB: A:691-827 UniProt: 691-827                                                                                                     ------------------ PROSITE
               Transcript 1 Exon 1.7b  PDB: A:23-845 (gaps) UniProt: 1-860 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             Transcript 1
                 3j0a A  23 SCSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC----------FSLFIVCTVTLTLFLMTILTVTKFR----------------DHPQGTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQILKKEKEKKK 845
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622      |  -       642       652       662 |       -       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        629        640                     664              681

Chain B from PDB  Type:PROTEIN  Length:632
 aligned with TLR5_HUMAN | O60602 from UniProtKB/Swiss-Prot  Length:858

    Alignment length:642
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662  
           TLR5_HUMAN    23 SCSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFR 664
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee................eeeee.....ee............eeee.......ee............eee......................ee.......................eeeee.........hhhhhh.....eeeee........hhhhhhhhhh.....ee...................................hhhhhhhhhhh.......eee.....................hhhhhh.....eee.....................eee.....................eee.....................eee.....................eee................eee.................eee........hhhhhhhh......eee......................eee........................ee....hhhhhh..............eeeee.................eeeeeee..............eeeeeee........hhhhhhhhhhhhhhh.hhhhh.....................----------hhhhhhhhhhhhh.hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------I-----------------------------A------------------------------T-------------------------------------K--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-----------------------L---------------------------F-------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------LRR  PDB: B:96-117    ----------------------------LRR  PDB: B:146-167   ---LRR  PDB: B:171-192   ------------------------------------------------------------------------------------------------------------------------LRR  PDB: B:313-334   --LRR  PDB: B:337-358   --------------------------LRR  PDB: B:385-406   ---------------LRR  PDB: B:422-445     ---LRR  PDB: B:449-470   ---LRR  PDB: B:474-494  --------LRR  PDB: B:503-524   --LRR  PDB: B:527-547  -LRR  PDB: B:549-570   ---------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.7b  PDB: B:23-664 (gaps) UniProt: 1-860 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Transcript 1
                 3j0a B  23 SCSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC----------FSLFIVCTVTLTLFLMTILTVTKFR 664
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622      |  -       642       652       662  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        629        640

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3J0A)

(no "CATH Domain" information available for 3J0A)

(no "Pfam Domain" information available for 3J0A)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (TLR5_HUMAN | O60602)

molecular function
	GO:0005149	interleukin-1 receptor binding	Interacting selectively and non-covalently with the interleukin-1 receptor.
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
	GO:0004888	transmembrane signaling receptor activity	Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.
biological process
	GO:0002755	MyD88-dependent toll-like receptor signaling pathway	Any series of molecular signals generated as a consequence of binding to a toll-like receptor where the MyD88 adaptor molecule mediates transduction of the signal. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate innate immune response.
	GO:0071222	cellular response to lipopolysaccharide	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipopolysaccharide stimulus; lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.
	GO:0071260	cellular response to mechanical stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus.
	GO:0050829	defense response to Gram-negative bacterium	Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0006954	inflammatory response	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0008584	male gonad development	The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure.
	GO:0001819	positive regulation of cytokine production	Any process that activates or increases the frequency, rate or extent of production of a cytokine.
	GO:0032757	positive regulation of interleukin-8 production	Any process that activates or increases the frequency, rate, or extent of interleukin-8 production.
	GO:0045429	positive regulation of nitric oxide biosynthetic process	Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.
	GO:0034123	positive regulation of toll-like receptor signaling pathway	Any process that activates or increases the frequency, rate, or extent of toll-like receptor signaling pathway.
	GO:0050707	regulation of cytokine secretion	Any process that modulates the frequency, rate or extent of the regulated release of cytokines from a cell.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
	GO:0034146	toll-like receptor 5 signaling pathway	Any series of molecular signals generated as a consequence of binding to toll-like receptor 5.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
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	3j0a
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	TLR5_HUMAN \| O60602	:	1p95

(no "Related Entries Specified in the PDB File" available for 3J0A)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 28)

Sites (28, 28)

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (9, 16)

PROSITE Motifs (2, 25)

Exons (1, 2)

Sequences/Alignments

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SCOP Domains (0, 0)

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Gene Ontology (23, 23)

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