3J0A - Sequence, Chains, Asymmetric and Biological Units

• Title: HOMOLOGY MODEL OF HUMAN TOLL-LIKE RECEPTOR 5 FITTED INTO AN MICROSCOPY SINGLE PARTICLE RECONSTRUCTION
• Keywords: TOLL-LIKE RECEPTOR 5, MEMBRANE PROTEIN, LEUCINE-RICH REPEAT, ASYMMETRIC HOMODIMER, GLYCOPROTEIN, IMMUNE SYSTEM
• Experiment: ELECTRON MICROSCOPY
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3J0A	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TOLL-LIKE RECEPTOR 5	A	797	6437	0
2	Protein	TOLL-LIKE RECEPTOR 5	B	632	5055	0
3	Ligand		C	2	0	24
4	Ligand		D	2	0	24
5	Ligand		E	2	0	24
6	Ligand		F	2	0	24
7	Ligand		G	2	0	24
8	Ligand		H	2	0	24
9	Ligand		I	2	0	24
10	Ligand		J	2	0	24
11	Ligand		K	2	0	24
12	Ligand		L	2	0	24
13	Ligand		M	2	0	24
14	Ligand		N	2	0	24
15	Ligand		O	2	0	24
16	Ligand		P	2	0	24
total				1457	11492	336

Proteins

Unit 1

SER 23 CYS 24 SER 25 PHE 26 ASP 27 GLY 28 ARG 29 ILE 30 ALA 31 PHE 32 TYR 33 ARG 34 PHE 35 CYS 36 ASN 37 LEU 38 THR 39 GLN 40 VAL 41 PRO 42 GLN 43 VAL 44 LEU 45 ASN 46 THR 47 THR 48 GLU 49 ARG 50 LEU 51 LEU 52 LEU 53 SER 54 PHE 55 ASN 56 TYR 57 ILE 58 ARG 59 THR 60 VAL 61 THR 62 ALA 63 SER 64 SER 65 PHE 66 PRO 67 PHE 68 LEU 69 GLU 70 GLN 71 LEU 72 GLN 73 LEU 74 LEU 75 GLU 76 LEU 77 GLY 78 SER 79 GLN 80 TYR 81 THR 82 PRO 83 LEU 84 THR 85 ILE 86 ASP 87 LYS 88 GLU 89 ALA 90 PHE 91 ARG 92 ASN 93 LEU 94 PRO 95 ASN 96 LEU 97 ARG 98 ILE 99 LEU 100 ASP 101 LEU 102 GLY 103 SER 104 SER 105 LYS 106 ILE 107 TYR 108 PHE 109 LEU 110 HIS 111 PRO 112 ASP 113 ALA 114 PHE 115 GLN 116 GLY 117 LEU 118 PHE 119 HIS 120 LEU 121 PHE 122 GLU 123 LEU 124 ARG 125 LEU 126 TYR 127 PHE 128 CYS 129 GLY 130 LEU 131 SER 132 ASP 133 ALA 134 VAL 135 LEU 136 LYS 137 ASP 138 GLY 139 TYR 140 PHE 141 ARG 142 ASN 143 LEU 144 LYS 145 ALA 146 LEU 147 THR 148 ARG 149 LEU 150 ASP 151 LEU 152 SER 153 LYS 154 ASN 155 GLN 156 ILE 157 ARG 158 SER 159 LEU 160 TYR 161 LEU 162 HIS 163 PRO 164 SER 165 PHE 166 GLY 167 LYS 168 LEU 169 ASN 170 SER 171 LEU 172 LYS 173 SER 174 ILE 175 ASP 176 PHE 177 SER 178 SER 179 ASN 180 GLN 181 ILE 182 PHE 183 LEU 184 VAL 185 CYS 186 GLU 187 HIS 188 GLU 189 LEU 190 GLU 191 PRO 192 LEU 193 GLN 194 GLY 195 LYS 196 THR 197 LEU 198 SER 199 PHE 200 PHE 201 SER 202 LEU 203 ALA 204 ALA 205 ASN 206 SER 207 LEU 208 TYR 209 SER 210 ARG 211 VAL 212 SER 213 VAL 214 ASP 215 TRP 216 GLY 217 LYS 218 CYS 219 MET 220 ASN 221 PRO 222 PHE 223 ARG 224 ASN 225 MET 226 VAL 227 LEU 228 GLU 229 ILE 230 LEU 231 ASP 232 VAL 233 SER 234 GLY 235 ASN 236 GLY 237 TRP 238 THR 239 VAL 240 ASP 241 ILE 242 THR 243 GLY 244 ASN 245 PHE 246 SER 247 ASN 248 ALA 249 ILE 250 SER 251 LYS 252 SER 253 GLN 254 ALA 255 PHE 256 SER 257 LEU 258 ILE 259 LEU 260 ALA 261 HIS 262 HIS 263 ILE 264 MET 265 GLY 266 ALA 267 GLY 268 PHE 269 GLY 270 PHE 271 HIS 272 ASN 273 ILE 274 LYS 275 ASP 276 PRO 277 ASP 278 GLN 279 ASN 280 THR 281 PHE 282 ALA 283 GLY 284 LEU 285 ALA 286 ARG 287 SER 288 SER 289 VAL 290 ARG 291 HIS 292 LEU 293 ASP 294 LEU 295 SER 296 HIS 297 GLY 298 PHE 299 VAL 300 PHE 301 SER 302 LEU 303 ASN 304 SER 305 ARG 306 VAL 307 PHE 308 GLU 309 THR 310 LEU 311 LYS 312 ASP 313 LEU 314 LYS 315 VAL 316 LEU 317 ASN 318 LEU 319 ALA 320 TYR 321 ASN 322 LYS 323 ILE 324 ASN 325 LYS 326 ILE 327 ALA 328 ASP 329 GLU 330 ALA 331 PHE 332 TYR 333 GLY 334 LEU 335 ASP 336 ASN 337 LEU 338 GLN 339 VAL 340 LEU 341 ASN 342 LEU 343 SER 344 TYR 345 ASN 346 LEU 347 LEU 348 GLY 349 GLU 350 LEU 351 TYR 352 SER 353 SER 354 ASN 355 PHE 356 TYR 357 GLY 358 LEU 359 PRO 360 LYS 361 VAL 362 ALA 363 TYR 364 ILE 365 ASP 366 LEU 367 GLN 368 LYS 369 ASN 370 HIS 371 ILE 372 ALA 373 ILE 374 ILE 375 GLN 376 ASP 377 GLN 378 THR 379 PHE 380 LYS 381 PHE 382 LEU 383 GLU 384 LYS 385 LEU 386 GLN 387 THR 388 LEU 389 ASP 390 LEU 391 ARG 392 ASP 393 ASN 394 ALA 395 LEU 396 THR 397 THR 398 ILE 399 HIS 400 PHE 401 ILE 402 PRO 403 SER 404 ILE 405 PRO 406 ASP 407 ILE 408 PHE 409 LEU 410 SER 411 GLY 412 ASN 413 LYS 414 LEU 415 VAL 416 THR 417 LEU 418 PRO 419 LYS 420 ILE 421 ASN 422 LEU 423 THR 424 ALA 425 ASN 426 LEU 427 ILE 428 HIS 429 LEU 430 SER 431 GLU 432 ASN 433 ARG 434 LEU 435 GLU 436 ASN 437 LEU 438 ASP 439 ILE 440 LEU 441 TYR 442 PHE 443 LEU 444 LEU 445 ARG 446 VAL 447 PRO 448 HIS 449 LEU 450 GLN 451 ILE 452 LEU 453 ILE 454 LEU 455 ASN 456 GLN 457 ASN 458 ARG 459 PHE 460 SER 461 SER 462 CYS 463 SER 464 GLY 465 ASP 466 GLN 467 THR 468 PRO 469 SER 470 GLU 471 ASN 472 PRO 473 SER 474 LEU 475 GLU 476 GLN 477 LEU 478 PHE 479 LEU 480 GLY 481 GLU 482 ASN 483 MET 484 LEU 485 GLN 486 LEU 487 ALA 488 TRP 489 GLU 490 THR 491 GLU 492 LEU 493 CYS 494 TRP 495 ASP 496 VAL 497 PHE 498 GLU 499 GLY 500 LEU 501 SER 502 HIS 503 LEU 504 GLN 505 VAL 506 LEU 507 TYR 508 LEU 509 ASN 510 HIS 511 ASN 512 TYR 513 LEU 514 ASN 515 SER 516 LEU 517 PRO 518 PRO 519 GLY 520 VAL 521 PHE 522 SER 523 HIS 524 LEU 525 THR 526 ALA 527 LEU 528 ARG 529 GLY 530 LEU 531 SER 532 LEU 533 ASN 534 SER 535 ASN 536 ARG 537 LEU 538 THR 539 VAL 540 LEU 541 SER 542 HIS 543 ASN 544 ASP 545 LEU 546 PRO 547 ALA 548 ASN 549 LEU 550 GLU 551 ILE 552 LEU 553 ASP 554 ILE 555 SER 556 ARG 557 ASN 558 GLN 559 LEU 560 LEU 561 ALA 562 PRO 563 ASN 564 PRO 565 ASP 566 VAL 567 PHE 568 VAL 569 SER 570 LEU 571 SER 572 VAL 573 LEU 574 ASP 575 ILE 576 THR 577 HIS 578 ASN 579 LYS 580 PHE 581 ILE 582 CYS 583 GLU 584 CYS 585 GLU 586 LEU 587 SER 588 THR 589 PHE 590 ILE 591 ASN 592 TRP 593 LEU 594 ASN 595 HIS 596 THR 597 ASN 598 VAL 599 THR 600 ILE 601 ALA 602 GLY 603 PRO 604 PRO 605 ALA 606 ASP 607 ILE 608 TYR 609 CYS 610 VAL 611 TYR 612 PRO 613 ASP 614 SER 615 PHE 616 SER 617 GLY 618 VAL 619 SER 620 LEU 621 PHE 622 SER 623 LEU 624 SER 625 THR 626 GLU 627 GLY 628 CYS 629 PHE 640 SER 641 LEU 642 PHE 643 ILE 644 VAL 645 CYS 646 THR 647 VAL 648 THR 649 LEU 650 THR 651 LEU 652 PHE 653 LEU 654 MET 655 THR 656 ILE 657 LEU 658 THR 659 VAL 660 THR 661 LYS 662 PHE 663 ARG 664 ASP 681 HIS 682 PRO 683 GLN 684 GLY 685 THR 686 GLU 687 PRO 688 ASP 689 MET 690 TYR 691 LYS 692 TYR 693 ASP 694 ALA 695 TYR 696 LEU 697 CYS 698 PHE 699 SER 700 SER 701 LYS 702 ASP 703 PHE 704 THR 705 TRP 706 VAL 707 GLN 708 ASN 709 ALA 710 LEU 711 LEU 712 LYS 713 HIS 714 LEU 715 ASP 716 THR 717 GLN 718 TYR 719 SER 720 ASP 721 GLN 722 ASN 723 ARG 724 PHE 725 ASN 726 LEU 727 CYS 728 PHE 729 GLU 730 GLU 731 ARG 732 ASP 733 PHE 734 VAL 735 PRO 736 GLY 737 GLU 738 ASN 739 ARG 740 ILE 741 ALA 742 ASN 743 ILE 744 GLN 745 ASP 746 ALA 747 ILE 748 TRP 749 ASN 750 SER 751 ARG 752 LYS 753 ILE 754 VAL 755 CYS 756 LEU 757 VAL 758 SER 759 ARG 760 HIS 761 PHE 762 LEU 763 ARG 764 ASP 765 GLY 766 TRP 767 CYS 768 LEU 769 GLU 770 ALA 771 PHE 772 SER 773 TYR 774 ALA 775 GLN 776 GLY 777 ARG 778 CYS 779 LEU 780 SER 781 ASP 782 LEU 783 ASN 784 SER 785 ALA 786 LEU 787 ILE 788 MET 789 VAL 790 VAL 791 VAL 792 GLY 793 SER 794 LEU 795 SER 796 GLN 797 TYR 798 GLN 799 LEU 800 MET 801 LYS 802 HIS 803 GLN 804 SER 805 ILE 806 ARG 807 GLY 808 PHE 809 VAL 810 GLN 811 LYS 812 GLN 813 GLN 814 TYR 815 LEU 816 ARG 817 TRP 818 PRO 819 GLU 820 ASP 821 PHE 822 GLN 823 ASP 824 VAL 825 GLY 826 TRP 827 PHE 828 LEU 829 HIS 830 LYS 831 LEU 832 SER 833 GLN 834 GLN 835 ILE 836 LEU 837 LYS 838 LYS 839 GLU 840 LYS 841 GLU 842 LYS 843 LYS 844 LYS 845

Unit 2

SER 23 CYS 24 SER 25 PHE 26 ASP 27 GLY 28 ARG 29 ILE 30 ALA 31 PHE 32 TYR 33 ARG 34 PHE 35 CYS 36 ASN 37 LEU 38 THR 39 GLN 40 VAL 41 PRO 42 GLN 43 VAL 44 LEU 45 ASN 46 THR 47 THR 48 GLU 49 ARG 50 LEU 51 LEU 52 LEU 53 SER 54 PHE 55 ASN 56 TYR 57 ILE 58 ARG 59 THR 60 VAL 61 THR 62 ALA 63 SER 64 SER 65 PHE 66 PRO 67 PHE 68 LEU 69 GLU 70 GLN 71 LEU 72 GLN 73 LEU 74 LEU 75 GLU 76 LEU 77 GLY 78 SER 79 GLN 80 TYR 81 THR 82 PRO 83 LEU 84 THR 85 ILE 86 ASP 87 LYS 88 GLU 89 ALA 90 PHE 91 ARG 92 ASN 93 LEU 94 PRO 95 ASN 96 LEU 97 ARG 98 ILE 99 LEU 100 ASP 101 LEU 102 GLY 103 SER 104 SER 105 LYS 106 ILE 107 TYR 108 PHE 109 LEU 110 HIS 111 PRO 112 ASP 113 ALA 114 PHE 115 GLN 116 GLY 117 LEU 118 PHE 119 HIS 120 LEU 121 PHE 122 GLU 123 LEU 124 ARG 125 LEU 126 TYR 127 PHE 128 CYS 129 GLY 130 LEU 131 SER 132 ASP 133 ALA 134 VAL 135 LEU 136 LYS 137 ASP 138 GLY 139 TYR 140 PHE 141 ARG 142 ASN 143 LEU 144 LYS 145 ALA 146 LEU 147 THR 148 ARG 149 LEU 150 ASP 151 LEU 152 SER 153 LYS 154 ASN 155 GLN 156 ILE 157 ARG 158 SER 159 LEU 160 TYR 161 LEU 162 HIS 163 PRO 164 SER 165 PHE 166 GLY 167 LYS 168 LEU 169 ASN 170 SER 171 LEU 172 LYS 173 SER 174 ILE 175 ASP 176 PHE 177 SER 178 SER 179 ASN 180 GLN 181 ILE 182 PHE 183 LEU 184 VAL 185 CYS 186 GLU 187 HIS 188 GLU 189 LEU 190 GLU 191 PRO 192 LEU 193 GLN 194 GLY 195 LYS 196 THR 197 LEU 198 SER 199 PHE 200 PHE 201 SER 202 LEU 203 ALA 204 ALA 205 ASN 206 SER 207 LEU 208 TYR 209 SER 210 ARG 211 VAL 212 SER 213 VAL 214 ASP 215 TRP 216 GLY 217 LYS 218 CYS 219 MET 220 ASN 221 PRO 222 PHE 223 ARG 224 ASN 225 MET 226 VAL 227 LEU 228 GLU 229 ILE 230 LEU 231 ASP 232 VAL 233 SER 234 GLY 235 ASN 236 GLY 237 TRP 238 THR 239 VAL 240 ASP 241 ILE 242 THR 243 GLY 244 ASN 245 PHE 246 SER 247 ASN 248 ALA 249 ILE 250 SER 251 LYS 252 SER 253 GLN 254 ALA 255 PHE 256 SER 257 LEU 258 ILE 259 LEU 260 ALA 261 HIS 262 HIS 263 ILE 264 MET 265 GLY 266 ALA 267 GLY 268 PHE 269 GLY 270 PHE 271 HIS 272 ASN 273 ILE 274 LYS 275 ASP 276 PRO 277 ASP 278 GLN 279 ASN 280 THR 281 PHE 282 ALA 283 GLY 284 LEU 285 ALA 286 ARG 287 SER 288 SER 289 VAL 290 ARG 291 HIS 292 LEU 293 ASP 294 LEU 295 SER 296 HIS 297 GLY 298 PHE 299 VAL 300 PHE 301 SER 302 LEU 303 ASN 304 SER 305 ARG 306 VAL 307 PHE 308 GLU 309 THR 310 LEU 311 LYS 312 ASP 313 LEU 314 LYS 315 VAL 316 LEU 317 ASN 318 LEU 319 ALA 320 TYR 321 ASN 322 LYS 323 ILE 324 ASN 325 LYS 326 ILE 327 ALA 328 ASP 329 GLU 330 ALA 331 PHE 332 TYR 333 GLY 334 LEU 335 ASP 336 ASN 337 LEU 338 GLN 339 VAL 340 LEU 341 ASN 342 LEU 343 SER 344 TYR 345 ASN 346 LEU 347 LEU 348 GLY 349 GLU 350 LEU 351 TYR 352 SER 353 SER 354 ASN 355 PHE 356 TYR 357 GLY 358 LEU 359 PRO 360 LYS 361 VAL 362 ALA 363 TYR 364 ILE 365 ASP 366 LEU 367 GLN 368 LYS 369 ASN 370 HIS 371 ILE 372 ALA 373 ILE 374 ILE 375 GLN 376 ASP 377 GLN 378 THR 379 PHE 380 LYS 381 PHE 382 LEU 383 GLU 384 LYS 385 LEU 386 GLN 387 THR 388 LEU 389 ASP 390 LEU 391 ARG 392 ASP 393 ASN 394 ALA 395 LEU 396 THR 397 THR 398 ILE 399 HIS 400 PHE 401 ILE 402 PRO 403 SER 404 ILE 405 PRO 406 ASP 407 ILE 408 PHE 409 LEU 410 SER 411 GLY 412 ASN 413 LYS 414 LEU 415 VAL 416 THR 417 LEU 418 PRO 419 LYS 420 ILE 421 ASN 422 LEU 423 THR 424 ALA 425 ASN 426 LEU 427 ILE 428 HIS 429 LEU 430 SER 431 GLU 432 ASN 433 ARG 434 LEU 435 GLU 436 ASN 437 LEU 438 ASP 439 ILE 440 LEU 441 TYR 442 PHE 443 LEU 444 LEU 445 ARG 446 VAL 447 PRO 448 HIS 449 LEU 450 GLN 451 ILE 452 LEU 453 ILE 454 LEU 455 ASN 456 GLN 457 ASN 458 ARG 459 PHE 460 SER 461 SER 462 CYS 463 SER 464 GLY 465 ASP 466 GLN 467 THR 468 PRO 469 SER 470 GLU 471 ASN 472 PRO 473 SER 474 LEU 475 GLU 476 GLN 477 LEU 478 PHE 479 LEU 480 GLY 481 GLU 482 ASN 483 MET 484 LEU 485 GLN 486 LEU 487 ALA 488 TRP 489 GLU 490 THR 491 GLU 492 LEU 493 CYS 494 TRP 495 ASP 496 VAL 497 PHE 498 GLU 499 GLY 500 LEU 501 SER 502 HIS 503 LEU 504 GLN 505 VAL 506 LEU 507 TYR 508 LEU 509 ASN 510 HIS 511 ASN 512 TYR 513 LEU 514 ASN 515 SER 516 LEU 517 PRO 518 PRO 519 GLY 520 VAL 521 PHE 522 SER 523 HIS 524 LEU 525 THR 526 ALA 527 LEU 528 ARG 529 GLY 530 LEU 531 SER 532 LEU 533 ASN 534 SER 535 ASN 536 ARG 537 LEU 538 THR 539 VAL 540 LEU 541 SER 542 HIS 543 ASN 544 ASP 545 LEU 546 PRO 547 ALA 548 ASN 549 LEU 550 GLU 551 ILE 552 LEU 553 ASP 554 ILE 555 SER 556 ARG 557 ASN 558 GLN 559 LEU 560 LEU 561 ALA 562 PRO 563 ASN 564 PRO 565 ASP 566 VAL 567 PHE 568 VAL 569 SER 570 LEU 571 SER 572 VAL 573 LEU 574 ASP 575 ILE 576 THR 577 HIS 578 ASN 579 LYS 580 PHE 581 ILE 582 CYS 583 GLU 584 CYS 585 GLU 586 LEU 587 SER 588 THR 589 PHE 590 ILE 591 ASN 592 TRP 593 LEU 594 ASN 595 HIS 596 THR 597 ASN 598 VAL 599 THR 600 ILE 601 ALA 602 GLY 603 PRO 604 PRO 605 ALA 606 ASP 607 ILE 608 TYR 609 CYS 610 VAL 611 TYR 612 PRO 613 ASP 614 SER 615 PHE 616 SER 617 GLY 618 VAL 619 SER 620 LEU 621 PHE 622 SER 623 LEU 624 SER 625 THR 626 GLU 627 GLY 628 CYS 629 PHE 640 SER 641 LEU 642 PHE 643 ILE 644 VAL 645 CYS 646 THR 647 VAL 648 THR 649 LEU 650 THR 651 LEU 652 PHE 653 LEU 654 MET 655 THR 656 ILE 657 LEU 658 THR 659 VAL 660 THR 661 LYS 662 PHE 663 ARG 664

Ligands

Unit 3	NAG 1 FUC 2
Unit 4	NAG 1 FUC 2
Unit 5	NAG 1 FUC 2
Unit 6	NAG 1 FUC 2
Unit 7	NAG 1 FUC 2
Unit 8	NAG 1 FUC 2
Unit 9	NAG 1 FUC 2
Unit 10	NAG 1 FUC 2
Unit 11	NAG 1 FUC 2
Unit 12	NAG 1 FUC 2
Unit 13	NAG 1 FUC 2
Unit 14	NAG 1 FUC 2
Unit 15	NAG 1 FUC 2
Unit 16	NAG 1 FUC 2