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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FK506 BINDING DOMAIN OF PLASMODIUM VIVAX FKBP35 IN COMPLEX WITH FK506
 
Authors :  I. A. Qureshi, R. Alag, H. S. Yoon, J. Lescar
Date :  31 Jul 09  (Deposition) - 16 Jun 10  (Release) - 10 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Plasmodium Vivax, Fkbp35, Fk506, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Alag, I. A. Qureshi, N. Bharatham, J. Shin, J. Lescar, H. S. Yoon
Nmr And Crystallographic Structures Of The Fk506 Binding Domain Of Human Malarial Parasite Plasmodium Vivax Fkbp35
Protein Sci. V. 19 1577 2010
PubMed-ID: 20572013  |  Reference-DOI: 10.1002/PRO.438

(-) Compounds

Molecule 1 - 70 KDA PEPTIDYLPROLYL ISOMERASE, PUTATIVE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: FK506-BINDING DOMAIN, RESIDUES 1-126
    Organism Scientific: PLASMODIUM VIVAX
    Organism Taxid: 5855
    Strain: SALVADOR I

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FK51Ligand/Ion8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:43 , PHE A:54 , ASP A:55 , ARG A:60 , PHE A:64 , GLU A:72 , VAL A:73 , ILE A:74 , TRP A:77 , GLY A:99 , TYR A:100 , ILE A:109 , PHE A:117 , HOH A:129 , HOH A:143 , HOH A:156 , HOH A:163 , HOH A:201 , TYR B:43 , ASP B:55 , PHE B:64 , TRP B:77 , CYS B:105 , GLY B:106 , SER B:108 , ILE B:109 , HOH B:166BINDING SITE FOR RESIDUE FK5 A 501

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:105 -B:105

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3IHZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IHZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IHZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3IHZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
 aligned with A5K8X6_PLAVS | A5K8X6 from UniProtKB/TrEMBL  Length:302

    Alignment length:123
                                    13        23        33        43        53        63        73        83        93       103       113       123   
         A5K8X6_PLAVS     4 ETLEQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFRE 126
               SCOP domains d3ihza_ A: automated matches                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee......eeeeeee....hhhhh.....eeeeeeeeee.....eeeehhhhh..eeee......hhhhhhhhhh.....eeeeee.hhhh...............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ihz A   4 ETLEQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFRE 126
                                    13        23        33        43        53        63        73        83        93       103       113       123   


Chain B from PDB  Type:PROTEIN  Length:121
 aligned with A5K8X6_PLAVS | A5K8X6 from UniProtKB/TrEMBL  Length:302

    Alignment length:121
                                    15        25        35        45        55        65        75        85        95       105       115       125 
         A5K8X6_PLAVS     6 LEQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFRE 126
               SCOP domains d3ihzb_ B: automated matches                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee......eeeeeee....hhhhh.....eeeeeeeeee.....eeeehhhhh..eeee......hhhhhhhhhh.....eeeeee.hhhh...............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ihz B   6 LEQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFRE 126
                                    15        25        35        45        55        65        75        85        95       105       115       125
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IHZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IHZ)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (A5K8X6_PLAVS | A5K8X6)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

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        A5K8X6_PLAVS | A5K8X6: 2ki3 3ni6 3pa7 4itz 4j4o 4mgv

(-) Related Entries Specified in the PDB File

2vn1 CRYSTAL STRUCTURE OF THE FK506-BINDING DOMAIN OF PLASMODIUM FALCIPARUM FKBP35 IN COMPLEX WITH FK506