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(-) Description

Title :  STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF FK506 BINDING DOMAIN FROM PLASMODIUM VIVAX
 
Authors :  R. Alag, H. S. Yoon, J. Shin
Date :  21 Apr 09  (Deposition) - 14 Apr 10  (Release) - 14 Apr 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Protein, Isomerase, Tpr Repeat (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Alag, J. Shin, H. S. Yoon
Nmr Assignments Of The Fk506-Binding Domain Of Fk506-Binding Protein 35 From Plasmodium Vivax
Biomol. Nmr Assign. V. 3 243 2009
PubMed-ID: 19774494  |  Reference-DOI: 10.1007/S12104-009-9185-1

(-) Compounds

Molecule 1 - 70 KDA PEPTIDYLPROLYL ISOMERASE, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PSUMO
    Expression System Vector Type: VECTOR
    Fragment: RESIDUES 1-126
    Organism Scientific: PLASMODIUM VIVAX
    Organism Taxid: 5855
    Synonym: PVFKBD

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KI3)

(-) Sites  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:126
 aligned with A5K8X6_PLAVS | A5K8X6 from UniProtKB/TrEMBL  Length:302

    Alignment length:126
                                    10        20        30        40        50        60        70        80        90       100       110       120      
         A5K8X6_PLAVS     1 MEQETLEQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFRE 126
               SCOP domains d2ki3a_ A: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ----------------------------FKBP_C-2ki3A01 A:29-122                                                                       ---- Pfam domains
         Sec.struct. author ......eeee......eeeeeee....hhhhh.....eeeeeeeeee.....ee.hhhhhh..eeee......hhhhhhhhh......eeeeee....................eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ki3 A   1 MEQETLEQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFRE 126
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KI3)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: FKBP_C] (58)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (A5K8X6_PLAVS | A5K8X6)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

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        A5K8X6_PLAVS | A5K8X6: 3ihz 3ni6 3pa7 4itz 4j4o 4mgv

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