3IF9 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF GLYCINE OXIDASE G51S/A54R/H244A MUTANT IN COMPLEX WITH INHIBITOR GLYCOLATE

Authors :   M. Pedotti, E. Rosini, G. Molla, T. Moschetti, B. Vallone, C. Savino, L. Pollegioni

Date :   24 Jul 09 (Deposition) - 27 Oct 09 (Release) - 26 Dec 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: C,D  (2x)

Keywords :   Go Structure, G51S/A54R/H244A, Glycolate, Fad, Flavoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Pedotti, E. Rosini, G. Molla, T. Moschetti, C. Savino, B. Vallone, L. Pollegioni
Glyphosate Resistance By Engineering The Flavoenzyme Glycin Oxidase.
J. Biol. Chem. V. 284 36415 2009
PubMed-ID: 19864430 | Reference-DOI: 10.1074/JBC.M109.051631

Molecule 1 - GLYCINE OXIDASE
	Chains	:	A, B, C, D
	EC Number	:	1.4.3.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PT7(BH)
	Expression System Strain	:	BL21(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GOXB, YJBR, BSU11670
	Mutation	:	YES
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (2x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	GOA	4	Ligand/Ion	GLYCOLIC ACID

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	GOA	4	Ligand/Ion	GLYCOLIC ACID

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	GOA	4	Ligand/Ion	GLYCOLIC ACID

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:246 , ARG A:302 , ARG A:329 , FAD A:371	BINDING SITE FOR RESIDUE GOA A 370
2	AC2	SOFTWARE	GLY A:11 , GLY A:13 , ILE A:14 , ILE A:15 , GLU A:34 , SER A:35 , THR A:42 , THR A:43 , ALA A:46 , ALA A:47 , GLY A:48 , MET A:49 , PRO A:173 , VAL A:174 , SER A:202 , GLY A:203 , MET A:208 , PHE A:209 , CYS A:226 , TYR A:246 , GLY A:300 , ARG A:302 , HIS A:327 , PHE A:328 , ARG A:329 , ASN A:330 , GLY A:331 , ILE A:332 , LEU A:333 , GOA A:370 , HOH A:373 , HOH A:374 , HOH A:379 , HOH A:383 , HOH A:402	BINDING SITE FOR RESIDUE FAD A 371
3	AC3	SOFTWARE	TYR B:246 , ARG B:302 , ARG B:329 , FAD B:371	BINDING SITE FOR RESIDUE GOA B 370
4	AC4	SOFTWARE	GLY B:11 , GLY B:13 , ILE B:14 , ILE B:15 , PHE B:33 , GLU B:34 , SER B:35 , ARG B:41 , THR B:42 , THR B:43 , ALA B:45 , ALA B:46 , ALA B:47 , GLY B:48 , MET B:49 , PRO B:173 , VAL B:174 , SER B:202 , GLY B:203 , TRP B:205 , MET B:208 , PHE B:209 , TYR B:246 , GLY B:300 , ARG B:302 , HIS B:327 , PHE B:328 , ARG B:329 , ASN B:330 , GLY B:331 , ILE B:332 , LEU B:333 , GOA B:370 , HOH B:372 , HOH B:374 , HOH B:380 , HOH B:403 , HOH B:412	BINDING SITE FOR RESIDUE FAD B 371
5	AC5	SOFTWARE	TYR C:246 , ARG C:302 , ARG C:329 , FAD C:371	BINDING SITE FOR RESIDUE GOA C 370
6	AC6	SOFTWARE	GLY C:11 , GLY C:13 , ILE C:14 , ILE C:15 , PHE C:33 , GLU C:34 , SER C:35 , ARG C:41 , THR C:42 , THR C:43 , ALA C:46 , ALA C:47 , GLY C:48 , MET C:49 , VAL C:174 , SER C:202 , GLY C:203 , TRP C:205 , CYS C:226 , TYR C:246 , GLY C:300 , ARG C:302 , HIS C:327 , PHE C:328 , ARG C:329 , ASN C:330 , GLY C:331 , ILE C:332 , LEU C:333 , GOA C:370 , HOH C:372 , HOH C:373 , HOH C:374 , HOH C:381 , HOH C:390 , HOH C:404	BINDING SITE FOR RESIDUE FAD C 371
7	AC7	SOFTWARE	TYR D:246 , ALA D:259 , ARG D:302 , ARG D:329 , FAD D:371	BINDING SITE FOR RESIDUE GOA D 370
8	AC8	SOFTWARE	GLY D:11 , GLY D:12 , GLY D:13 , ILE D:14 , ILE D:15 , PHE D:33 , GLU D:34 , SER D:35 , ARG D:41 , THR D:42 , THR D:43 , ALA D:46 , ALA D:47 , GLY D:48 , MET D:49 , VAL D:174 , SER D:202 , GLY D:203 , TRP D:205 , MET D:208 , CYS D:226 , TYR D:246 , GLY D:300 , ARG D:302 , HIS D:327 , PHE D:328 , ARG D:329 , ASN D:330 , GLY D:331 , ILE D:332 , LEU D:333 , GOA D:370 , HOH D:378 , HOH D:389	BINDING SITE FOR RESIDUE FAD D 371

(no "SS Bond" information available for 3IF9)

Asymmetric Unit

No.	Residues
1	Arg A:54	-	Glu A:55
2	Glu A:178	-	Arg A:179
3	Gly A:258	-	Ala A:259
4	Gly B:258	-	Ala B:259
5	Gly C:258	-	Ala C:259
6	Gly D:258	-	Ala D:259

(no "SAP(SNP)/Variant" information available for 3IF9)

(no "PROSITE Motif" information available for 3IF9)

(no "Exon" information available for 3IF9)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:364
 aligned with GLYOX_BACSU | O31616 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          GLYOX_BACSU     1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3if9A01 A:1-91,A:145-218,A:306-364  [code=3.50.50.60, no name defined]                     3if9A02 A:92-144,A:219-305                           3if9A01 A:1-91,A:145-218,A:306-364  [code=3.50.50.60, no name defined]    3if9A02 A:92-144,A:219-305 D-Amino Acid Oxidase, subunit A, domain 2                   3if9A01 A:1-91,A:145-218,A:306-364                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.eeee..hhhhhhhhhhhhhh...eeee.......hhhhhh.............hhhhhhhhhhhhhh.hhhhhhhhhhh.........eeeee.hhhhhhhhhhhh....eeeeehhhhhhhh........eeeee......hhhhhhhhhhhhhhhhh.eee......eee.....eeeee..eeeee..eee.hhhhhhhhhhhh......eeeeeeeeeee........eeee..eeeee....eeeee...ee.......hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee......eeeee..eeeeeeee........hhhhhhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3if9 A   1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLSAHRECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDACYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360

Chain B from PDB  Type:PROTEIN  Length:363
 aligned with GLYOX_BACSU | O31616 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          GLYOX_BACSU     1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3if9B01 B:1-91,B:145-218,B:306-364  [code=3.50.50.60, n o name defined]                    3if9B02 B:92-144,B:219-305                           3if9B01 B:1-91,B:145-218,B:306-364  [code=3.50.50.60, no name defined]    3if9B02 B:92-144,B:219-305 D-Amino Acid Oxidase, subunit A, domain 2                   3if9B01 B:1-91,B:145-218,B:306-364                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh.........-...hhhhhhhhhhhhhh.hhhhhhhhhhh.........eeee..hhhhhhhhhhhh....eeeehhhhhhhhh.........eeee......hhhhhhhhhhhhhhhh..eee......eee.....eeeee..eeeeeeeeee.hhhhhhhhhhhh......eeeeeeeeeee........eeee..eeeee....eeeee...ee.......hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee......eeeee..eeeeeeee....hhhhhhhhhhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3if9 B   1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLSAHRE-EERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDACYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
                                    10        20        30        40        50    | | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
                                                                                 55 |                                                                                                                                                                                                                                                                                                                   
                                                                                   57

Chain C from PDB  Type:PROTEIN  Length:361
 aligned with GLYOX_BACSU | O31616 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          GLYOX_BACSU     1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3if9C01 C:1-91,C:145-218,C:306-364  [code=3.50.50.60,    no name defined]                  3if9C02 C:92-144,C:219-305                           3if9C01 C:1-91,C:145-218,C:306-364  [code=3.50.50.60, no name defined]    3if9C02 C:92-144,C:219-305 D-Amino Acid Oxidase, subunit A, domain 2                   3if9C01 C:1-91,C:145-218,C:306-364                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh........---..hhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhh.........eehhhhhhhh........eeeee......hhhhhhhhhhhhhhhh..eee......eeeee..eeeeee..eeeeeeeeee.hhhhhhhhhhhh......eeeeeeeeeee........eeee..eeeee....eeeee...ee.......hhhhhhhhhhhhhh.hhhhhhheeeeeeeeeeee......eeeee..eeeeeeee....hhhhhhhhhhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3if9 C   1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLSAHR---ERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDACYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
                                    10        20        30        40        50   |   |60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
                                                                                54  58

Chain D from PDB  Type:PROTEIN  Length:361
 aligned with GLYOX_BACSU | O31616 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          GLYOX_BACSU     1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3if9D01 D:1-91,D:145-218,D:306-364  [code=3.50.50.60,    no name defined]                  3if9D02 D:92-144,D:219-305                           3if9D01 D:1-91,D:145-218,D:306-364  [code=3.50.50.60, no name defined]    3if9D02 D:92-144,D:219-305 D-Amino Acid Oxidase, subunit A, domain 2                   3if9D01 D:1-91,D:145-218,D:306-364                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh.......---...hhhhhhhhhhhhhhhhhhhhhhhhhh.........eeeee.hhhhhhhhhh......eeeeehhhhhhhh........eeeee......hhhhhhhhhhhhhhhh..eee......eee.....eeee.....eeeeeeee.hhhhhhhhhhhh.....eeeeeeeeeeee........eeee..eeeee....eeeee...ee.......hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeee.....eeeee..eeeeeeee....hhhhhhhhhhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3if9 D   1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLSAH---EERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDACYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
                                    10        20        30        40        50  |   | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
                                                                               53  57

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3IF9)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: D-Amino Acid Oxidase; Chain A, domain 2 (80)

Homologous Superfamily: D-Amino Acid Oxidase, subunit A, domain 2 (80)

Bacillus subtilis. Organism_taxid: 1423. (4)

1a	3if9A02	A:92-144,A:219-305
1b	3if9C02	C:92-144,C:219-305
1c	3if9D02	D:92-144,D:219-305
1d	3if9B02	B:92-144,B:219-305

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Bacillus subtilis. Organism_taxid: 1423. (4)

2a	3if9C01	C:1-91,C:145-218,C:306-364
2b	3if9B01	B:1-91,B:145-218,B:306-364
2c	3if9A01	A:1-91,A:145-218,A:306-364
2d	3if9D01	D:1-91,D:145-218,D:306-364

(no "Pfam Domain" information available for 3IF9)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GLYOX_BACSU | O31616)

molecular function
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0043799	glycine oxidase activity	Catalysis of the reactions: (1) glycine + H2O + O2 = glyoxylate + NH3 + hydrogen peroxide; (2) D-alanine + H2O + O2 = pyruvate + NH3 + hydrogen peroxide; (3) sarcosine + H2O + O2 = glyoxylate + methylamine + hydrogen peroxide; (4) N-ethylglycine + H2O + O2 = glyoxylate + ethylamine + hydrogen peroxide.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0009635	response to herbicide	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants.
	GO:0009228	thiamine biosynthetic process	The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
	GO:0009229	thiamine diphosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		FAD	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Arg A:54 - Glu A:55	[ RasMol ]
		Glu A:178 - Arg A:179	[ RasMol ]
		Gly A:258 - Ala A:259	[ RasMol ]
		Gly B:258 - Ala B:259	[ RasMol ]
		Gly C:258 - Ala C:259	[ RasMol ]
		Gly D:258 - Ala D:259	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3if9
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	GLYOX_BACSU \| O31616
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.4.3.19
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	GLYOX_BACSU \| O31616
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	GLYOX_BACSU \| O31616	:	1ng3 1ng4 1ryi

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File