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(-) Description

Title :  STRUCTURE OF GLYCINE OXIDASE WITH BOUND INHIBITOR GLYCOLATE
 
Authors :  M. Moertl, K. Diederichs, W. Welte, L. Pollegioni, G. Molla, L. Motteran, G. Andriolo, M. S. Pilone
Date :  22 Dec 03  (Deposition) - 22 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,D  (2x)
Keywords :  Flavoprotein; Oxidase; Protein-Inhibitor Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Moertl, K. Diederichs, W. Welte, G. Molla, L. Motteran, G. Andriolo, M. S. Pilone, L. Pollegioni
Structure-Function Correlation In Glycine Oxidase From Bacillus Subtilis
J. Biol. Chem. V. 279 29718 2004
PubMed-ID: 15105420  |  Reference-DOI: 10.1074/JBC.M401224200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLYCINE OXIDASE
    Chains: A, B, C, D
    EC Number: 1.4.3.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7
    Expression System Strain: BL21 (DE3) PLYS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GOXB, BSU11670
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): AB  
Biological Unit 2 (2x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOA4Ligand/IonGLYCOLIC ACID
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOA4Ligand/IonGLYCOLIC ACID
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOA4Ligand/IonGLYCOLIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:11 , GLY A:13 , ILE A:14 , ILE A:15 , PHE A:33 , GLU A:34 , SER A:35 , THR A:42 , THR A:43 , ALA A:46 , ALA A:47 , GLY A:48 , MET A:49 , VAL A:174 , SER A:202 , GLY A:203 , TRP A:205 , PHE A:209 , CYS A:226 , TYR A:246 , GLY A:300 , HIS A:327 , PHE A:328 , ARG A:329 , ASN A:330 , GLY A:331 , ILE A:332 , LEU A:333 , GOA A:9110 , HOH A:9111 , HOH A:9112 , HOH A:9113 , HOH A:9114 , HOH A:9115 , HOH A:9121 , HOH A:9250BINDING SITE FOR RESIDUE FAD A 9100
2AC2SOFTWAREILE B:10 , GLY B:11 , GLY B:13 , ILE B:14 , ILE B:15 , PHE B:33 , GLU B:34 , SER B:35 , ARG B:41 , THR B:42 , THR B:43 , ALA B:46 , ALA B:47 , GLY B:48 , MET B:49 , VAL B:174 , SER B:202 , TRP B:205 , PHE B:209 , CYS B:226 , TYR B:246 , GLY B:300 , ARG B:302 , HIS B:327 , PHE B:328 , ARG B:329 , ASN B:330 , GLY B:331 , ILE B:332 , LEU B:333 , GOA B:9210 , HOH B:9211 , HOH B:9212 , HOH B:9213 , HOH B:9214 , HOH B:9215 , HOH B:9218 , HOH B:9237 , HOH B:9299 , HOH B:9450BINDING SITE FOR RESIDUE FAD B 9200
3AC3SOFTWAREGLY C:11 , GLY C:13 , ILE C:14 , ILE C:15 , PHE C:33 , GLU C:34 , SER C:35 , ARG C:41 , THR C:42 , THR C:43 , ALA C:46 , ALA C:47 , GLY C:48 , MET C:49 , PRO C:173 , VAL C:174 , SER C:202 , TRP C:205 , PHE C:209 , CYS C:226 , TYR C:246 , GLY C:300 , ARG C:302 , HIS C:327 , PHE C:328 , ARG C:329 , ASN C:330 , GLY C:331 , ILE C:332 , LEU C:333 , GOA C:9310 , HOH C:9312 , HOH C:9313 , HOH C:9314 , HOH C:9315 , HOH C:9316 , HOH C:9326 , HOH C:9335 , HOH C:9399BINDING SITE FOR RESIDUE FAD C 9300
4AC4SOFTWAREILE D:10 , GLY D:11 , GLY D:13 , ILE D:14 , ILE D:15 , PHE D:33 , GLU D:34 , SER D:35 , ARG D:41 , THR D:42 , THR D:43 , ALA D:46 , ALA D:47 , GLY D:48 , MET D:49 , PRO D:173 , VAL D:174 , SER D:202 , GLY D:203 , TRP D:205 , PHE D:209 , CYS D:226 , TYR D:246 , GLY D:300 , ARG D:302 , HIS D:327 , PHE D:328 , ARG D:329 , ASN D:330 , GLY D:331 , ILE D:332 , LEU D:333 , GOA D:9410 , HOH D:9411 , HOH D:9413 , HOH D:9415 , HOH D:9418 , HOH D:9422BINDING SITE FOR RESIDUE FAD D 9400
5AC5SOFTWARETYR A:246 , ALA A:259 , ARG A:302 , ARG A:329 , FAD A:9100BINDING SITE FOR RESIDUE GOA A 9110
6AC6SOFTWARETYR B:246 , ALA B:259 , ARG B:302 , ARG B:329 , FAD B:9200BINDING SITE FOR RESIDUE GOA B 9210
7AC7SOFTWARETYR C:246 , ALA C:259 , ARG C:302 , ARG C:329 , FAD C:9300BINDING SITE FOR RESIDUE GOA C 9310
8AC8SOFTWARETYR D:246 , ALA D:259 , ARG D:302 , ARG D:329 , FAD D:9400BINDING SITE FOR RESIDUE GOA D 9410

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RYI)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Glu A:178 -Arg A:179
2Gly A:258 -Ala A:259
3Gly B:258 -Ala B:259
4Gly C:258 -Ala C:259
5Gly D:258 -Ala D:259

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RYI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RYI)

(-) Exons   (0, 0)

(no "Exon" information available for 1RYI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:364
 aligned with GLYOX_BACSU | O31616 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          GLYOX_BACSU     1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
               SCOP domains d1ryia1 A:1-218,A:307-364 Glycine oxidase ThiO                                                                                                                                                                            d1ryia2 A:219-306 Glycine oxidase ThiO                                                  d1ryia1 A:1-218,A:307-364 Glycine oxidase ThiO             SCOP domains
               CATH domains 1ryiA01 A:1-91,A:145-218,A:306-364  [code=3.50.50.60, no name defined]                     1ryiA02 A:92-144,A:219-305                           1ryiA01 A:1-91,A:145-218,A:306-364  [code=3.50.50.60, no name defined]    1ryiA02 A:92-144,A:219-305 D-Amino Acid Oxidase, subunit A, domain 2                   1ryiA01 A:1-91,A:145-218,A:306-364                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh....hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhh.........eeeee.hhhhhhhhhh......eeeeehhhhhhhh........eeeee......hhhhhhhhhhhhhhhh..eee......eee.....eeeee..eeeeeeeeee.hhhhhhhhhhhh......eeeeeeeeeee........eeee..eeeee....eeeee...ee.......hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee......eeeee..eeeeeeee........hhhhhhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ryi A   1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    


Chain B from PDB  Type:PROTEIN  Length:364
 aligned with GLYOX_BACSU | O31616 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          GLYOX_BACSU     1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
               SCOP domains d1ryib1 B:1-218,B:307-364 Glycine oxidase ThiO                                                                                                                                                                            d1ryib2 B:219-306 Glycine oxidase ThiO                                                  d1ryib1 B:1-218,B:307-364 Glycine oxidase ThiO             SCOP domains
               CATH domains 1ryiB01 B:1-91,B:145-218,B:306-364  [code=3.50.50.60, no name defined]                     1ryiB02 B:92-144,B:219-305                           1ryiB01 B:1-91,B:145-218,B:306-364  [code=3.50.50.60, no name defined]    1ryiB02 B:92-144,B:219-305 D-Amino Acid Oxidase, subunit A, domain 2                   1ryiB01 B:1-91,B:145-218,B:306-364                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh....hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhh.........eeeee.hhhhhhhhhh......eeeeehhhhhhhh........eeeee......hhhhhhhhhhhhhhhh..eee......eee.....eeeee..eeeeeeeeee.hhhhhhhhhhhh......eeeeeeeeeee........eeee..eeeee....eeeee...ee.......hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee......eeeee..eeeeeeee........hhhhhhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ryi B   1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    


Chain C from PDB  Type:PROTEIN  Length:364
 aligned with GLYOX_BACSU | O31616 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          GLYOX_BACSU     1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
               SCOP domains d1ryic1 C:1-218,C:307-364 Glycine oxidase ThiO                                                                                                                                                                            d1ryic2 C:219-306 Glycine oxidase ThiO                                                  d1ryic1 C:1-218,C:307-364 Glycine oxidase ThiO             SCOP domains
               CATH domains 1ryiC01 C:1-91,C:145-218,C:306-364  [code=3.50.50.60, no name defined]                     1ryiC02 C:92-144,C:219-305                           1ryiC01 C:1-91,C:145-218,C:306-364  [code=3.50.50.60, no name defined]    1ryiC02 C:92-144,C:219-305 D-Amino Acid Oxidase, subunit A, domain 2                   1ryiC01 C:1-91,C:145-218,C:306-364                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh....hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhh.........eeeee.hhhhhhhhhh......eeeeehhhhhhhh........eeeee......hhhhhhhhhhhhhhhh..eee......eeeee..eeeeee..eeeeeeeeee.hhhhhhhhhhhh......eeeeeeeeeee........eeee..eeeee....eeeee...ee.......hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee......eeeee..eeeeeeee........hhhhhhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ryi C   1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    


Chain D from PDB  Type:PROTEIN  Length:364
 aligned with GLYOX_BACSU | O31616 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360    
          GLYOX_BACSU     1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
               SCOP domains d1ryid1 D:1-218,D:307-364 Glycine oxidase ThiO                                                                                                                                                                            d1ryid2 D:219-306 Glycine oxidase ThiO                                                  d1ryid1 D:1-218,D:307-364 Glycine oxidase ThiO             SCOP domains
               CATH domains 1ryiD01 D:1-91,D:145-218,D:306-364  [code=3.50.50.60, no name defined]                     1ryiD02 D:92-144,D:219-305                           1ryiD01 D:1-91,D:145-218,D:306-364  [code=3.50.50.60, no name defined]    1ryiD02 D:92-144,D:219-305 D-Amino Acid Oxidase, subunit A, domain 2                   1ryiD01 D:1-91,D:145-218,D:306-364                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh.............hhhhhhhhhhhhhh.hhhhhhhhhhh.........eeeee.hhhhhhhhhh......eeeeehhhhhhhh........eeeee......hhhhhhhhhhhhhhhh..eee......eee.....eeeee..eeeeeeeeee.hhhhhhhhhhhh......eeeeeeeeeee........eeee..eeeee....eeeee...ee.......hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeee......eeeee..eeeeeeee........hhhhhhhhhhhhhh....hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ryi D   1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLPVKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK 364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1RYI)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GLYOX_BACSU | O31616)
molecular function
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0043799    glycine oxidase activity    Catalysis of the reactions: (1) glycine + H2O + O2 = glyoxylate + NH3 + hydrogen peroxide; (2) D-alanine + H2O + O2 = pyruvate + NH3 + hydrogen peroxide; (3) sarcosine + H2O + O2 = glyoxylate + methylamine + hydrogen peroxide; (4) N-ethylglycine + H2O + O2 = glyoxylate + ethylamine + hydrogen peroxide.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0009635    response to herbicide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a herbicide stimulus. Herbicides are chemicals used to kill or control the growth of plants.
    GO:0009228    thiamine biosynthetic process    The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
    GO:0009229    thiamine diphosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        GLYOX_BACSU | O31616: 1ng3 1ng4 3if9

(-) Related Entries Specified in the PDB File

1ng3 THE SAME PROTEIN COMPLEXED WITH ACETYL-GLYCINE
1ng4 THE SAME PROTEIN WITHOUT LIGAND