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(-) Description

Title :  CRYSTAL STRUCTURE OF MTBCRP IN COMPLEX WITH CAMP
 
Authors :  M. C. Reddy, S. K. Palaninathan, J. B. Bruning, C. Thurman, D. Smith, J. C. Sacchettini, Tb Structural Genomics Consortium (Tbsgc)
Date :  03 Jul 09  (Deposition) - 08 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Mycobacterium Tuberculosis, Camp Receptor Protein, Allosteric Mechanism, Dna Binding, Inhibition, Structural Genomics, Tb Structural Genomics Consortium, Tbsgc, Dna-Binding, Transcription, Transcription Regulation, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Reddy, S. K. Palaninathan, J. B. Bruning, C. Thurman, D. Smith, J. C. Sacchettini
Structural Insights Into The Mechanism Of The Allosteric Transitions Of Mycobacterium Tuberculosis Camp Receptor Protein.
J. Biol. Chem. V. 284 36581 2009
PubMed-ID: 19740754  |  Reference-DOI: 10.1074/JBC.M109.041343

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MT3777, RV3676
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1CMP4Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CMP2Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CMP2Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:38 , ILE A:57 , LEU A:69 , MET A:72 , PHE A:78 , GLY A:79 , GLU A:80 , LEU A:81 , SER A:82 , ARG A:89 , THR A:90 , SER A:91 , ARG A:130 , THR A:134 , ASN B:135BINDING SITE FOR RESIDUE CMP A 301
2AC2SOFTWAREASN A:135 , PHE B:38 , ILE B:57 , LEU B:69 , THR B:70 , MET B:72 , PHE B:78 , GLY B:79 , GLU B:80 , LEU B:81 , SER B:82 , ARG B:89 , THR B:90 , SER B:91 , ARG B:130 , THR B:134BINDING SITE FOR RESIDUE CMP B 301
3AC3SOFTWAREPHE C:38 , ILE C:57 , LEU C:69 , MET C:72 , PHE C:78 , GLY C:79 , GLU C:80 , LEU C:81 , SER C:82 , ARG C:89 , THR C:90 , SER C:91 , ARG C:130 , THR C:134 , ASN D:135BINDING SITE FOR RESIDUE CMP C 301
4AC4SOFTWAREASN C:135 , PHE D:38 , ILE D:57 , LEU D:69 , THR D:70 , MET D:72 , PHE D:78 , GLY D:79 , GLU D:80 , LEU D:81 , SER D:82 , ARG D:89 , THR D:90 , SER D:91 , ARG D:130 , THR D:134 , HOH D:242BINDING SITE FOR RESIDUE CMP D 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3I54)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro A:16 -Ser A:17
2Gly B:166 -Gly B:167
3Gly B:167 -Ala B:168
4Ala B:168 -Leu B:169
5Glu D:15 -Pro D:16
6Pro D:16 -Ser D:17

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3I54)

(-) PROSITE Motifs  (2, 7)

Asymmetric Unit (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CNMP_BINDING_3PS50042 cAMP/cGMP binding motif profile.CRPL_MYCTO10-130
 
 		  3A:10-130
B:10-130
D:10-130
CRPL_MYCTU10-130
 
 		  3A:10-130
B:10-130
D:10-130
2HTH_CRP_2PS51063 Crp-type HTH domain profile.CRPL_MYCTO144-217
 
 
 		  4A:144-217
B:144-217
C:144-217
D:144-217
CRPL_MYCTU144-217
 
 
 		  4A:144-217
B:144-217
C:144-217
D:144-217
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CNMP_BINDING_3PS50042 cAMP/cGMP binding motif profile.CRPL_MYCTO10-130
 
 		  2A:10-130
B:10-130
-
CRPL_MYCTU10-130
 
 		  2A:10-130
B:10-130
-
2HTH_CRP_2PS51063 Crp-type HTH domain profile.CRPL_MYCTO144-217
 
 
 		  2A:144-217
B:144-217
-
-
CRPL_MYCTU144-217
 
 
 		  2A:144-217
B:144-217
-
-
Biological Unit 2 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CNMP_BINDING_3PS50042 cAMP/cGMP binding motif profile.CRPL_MYCTO10-130
 
 		  1-
-
D:10-130
CRPL_MYCTU10-130
 
 		  1-
-
D:10-130
2HTH_CRP_2PS51063 Crp-type HTH domain profile.CRPL_MYCTO144-217
 
 
 		  2-
-
C:144-217
D:144-217
CRPL_MYCTU144-217
 
 
 		  2-
-
C:144-217
D:144-217

(-) Exons   (0, 0)

(no "Exon" information available for 3I54)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
 aligned with CRPL_MYCTO | P9WMH2 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:229
                                  1                                                                                                                                                                                                                              
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214         
           CRPL_MYCTO     - ------MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
               SCOP domains d3i54a1 A:-5-144 automated      matches                                                                                                               ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.........-----.eeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee....eee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---------------CNMP_BINDING_3  PDB: A:10-130 UniProt: 10-130                                                                            --------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) -----------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: A:144-217 UniProt: 144-217                                ------ PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i54 A  -5 LYFQSHMDEILARAGIFQGVEPSAIAA-----QPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
                                     4        14      |  -  |     34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214         
                                                     21    27                                                                                                                                                                                                    


Chain A from PDB  Type:PROTEIN  Length:224
 aligned with CRPL_MYCTU | P9WMH3 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:229
                                  1                                                                                                                                                                                                                              
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214         
           CRPL_MYCTU     - ------MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
               SCOP domains d3i54a1 A:-5-144 automated      matches                                                                                                               ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.........-----.eeee....eee.......eeeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee....eee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------------CNMP_BINDING_3  PDB: A:10-130 UniProt: 10-130                                                                            --------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: A:144-217 UniProt: 144-217                                ------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i54 A  -5 LYFQSHMDEILARAGIFQGVEPSAIAA-----QPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
                                     4        14      |  -  |     34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214         
                                                     21    27                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:219
 aligned with CRPL_MYCTO | P9WMH2 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:230
                                   1                                                                                                                                                                                                                              
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
           CRPL_MYCTO     - -------MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
               SCOP domains d3i54b1 B:-6-144 au  tomated    matches                                                                                                                d3i54b2 B:145-223 automated matches                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh...--........---.eeeee....eee.......eeeeeee..eeee..------.eeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee......ee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ----------------CNMP_BINDING_3  PDB: B:10-130 UniProt: 10-130                                                                            --------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: B:144-217 UniProt: 144-217                                ------ PROSITE (1)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i54 B  -6 NLYFQSHMDEILARAGIFQ--EPSAIAAL---LQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR------NLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
                                     3        |- |      |-  |     33        43        53      |  -   |    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
                                             12 15     22  26                                60     67                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:219
 aligned with CRPL_MYCTU | P9WMH3 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:230
                                   1                                                                                                                                                                                                                              
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
           CRPL_MYCTU     - -------MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
               SCOP domains d3i54b1 B:-6-144 au  tomated    matches                                                                                                                d3i54b2 B:145-223 automated matches                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh...--........---.eeeee....eee.......eeeeeee..eeee..------.eeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee......ee....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------CNMP_BINDING_3  PDB: B:10-130 UniProt: 10-130                                                                            --------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: B:144-217 UniProt: 144-217                                ------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i54 B  -6 NLYFQSHMDEILARAGIFQ--EPSAIAAL---LQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR------NLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
                                     3        |- |      |-  |     33        43        53      |  -   |    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
                                             12 15     22  26                                60     67                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:206
 aligned with CRPL_MYCTO | P9WMH2 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:206
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217      
           CRPL_MYCTO    18 AIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
               SCOP domains d3i54c1 C:18-144 automated matches                                                                                             d3i54c2 C:145-223 automated matches                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...eeeee....eee........eeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee..eeeee...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) CNMP_BINDING_3  PDB: - UniProt: 10-130                                                                           --------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) ------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: C:144-217 UniProt: 144-217                                ------ PROSITE (1)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i54 C  18 AIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217      


Chain C from PDB  Type:PROTEIN  Length:206
 aligned with CRPL_MYCTU | P9WMH3 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:206
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217      
           CRPL_MYCTU    18 AIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
               SCOP domains d3i54c1 C:18-144 automated matches                                                                                             d3i54c2 C:145-223 automated matches                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...eeeee....eee........eeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeehhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee..eeeee...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeee..eeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) CNMP_BINDING_3  PDB: - UniProt: 10-130                                                                           --------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: C:144-217 UniProt: 144-217                                ------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i54 C  18 AIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217      


Chain D from PDB  Type:PROTEIN  Length:228
 aligned with CRPL_MYCTO | P9WMH2 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:228
                                 1                                                                                                                                                                                                                              
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215        
           CRPL_MYCTO     - -----MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
               SCOP domains d3i54d1 D:-4-144 automated matches                                                                                                                   d3i54d2 D:145-223 automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh.......hhhhhhhh..eeeee....eee........eeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeehhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhh..hhhhhhhhhhhhhhhh..eee..eeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) --------------CNMP_BINDING_3  PDB: D:10-130 UniProt: 10-130                                                                            --------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: D:144-217 UniProt: 144-217                                ------ PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3i54 D  -4 YFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215        


Chain D from PDB  Type:PROTEIN  Length:228
 aligned with CRPL_MYCTU | P9WMH3 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:228
                                 1                                                                                                                                                                                                                              
                                 |   5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215        
           CRPL_MYCTU     - -----MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
               SCOP domains d3i54d1 D:-4-144 automated matches                                                                                                                   d3i54d2 D:145-223 automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhh.......hhhhhhhh..eeeee....eee........eeeeee..eeeeee.....eeeeeee....ee.hhhhhh......eeee...eeeeeehhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee..eeee....hhhhhhhhh..hhhhhhhhhhhhhhhh..eee..eeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --------------CNMP_BINDING_3  PDB: D:10-130 UniProt: 10-130                                                                            --------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------HTH_CRP_2  PDB: D:144-217 UniProt: 144-217                                ------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3i54 D  -4 YFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSERLARRA 223
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 7)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3I54)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3I54)

(-) Gene Ontology  (13, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (CRPL_MYCTU | P9WMH3)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030552    cAMP binding    Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0040007    growth    The increase in size or mass of an entire organism, a part of an organism or a cell.
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D   (CRPL_MYCTO | P9WMH2)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0030552    cAMP binding    Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRPL_MYCTO | P9WMH2: 3d0s 3h3u 3i59 3mzh 4a2u
        CRPL_MYCTU | P9WMH3: 3d0s 3h3u 3i59 3mzh 4a2u

(-) Related Entries Specified in the PDB File

3i59 CRYSTAL STRUCTURE OF MTBCRP IN COMPLEX WITH N6-CAMP RELATED ID: RV3676 RELATED DB: TARGETDB