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(-) Description

Title :  CRYSTAL STRUCTURE OF NUCLEOTIDE-BOUND HEXAMERIC CLPX
 
Authors :  S. E. Glynn, A. Martin, T. A. Baker, R. T. Sauer
Date :  18 Jun 09  (Deposition) - 24 Nov 09  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  A,E,F  (1x)
Biol. Unit 3:  B,C,D  (1x)
Keywords :  Clpxp, Aaa+ Molecular Machine, Hexamer, Asymmetric, , Atp-Binding, Chaperone, Metal-Binding, Nucleotide-Binding, Stress Response, Zinc- Finger, Metal Binding Protein, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Glynn, A. Martin, A. R. Nager, T. A. Baker, R. T. Sauer
Structures Of Asymmetric Clpx Hexamers Reveal Nucleotide-Dependent Motions In A Aaa+ Protein-Unfolding Machine.
Cell(Cambridge, Mass. ) V. 139 744 2009
PubMed-ID: 19914167  |  Reference-DOI: 10.1016/J.CELL.2009.09.034

(-) Compounds

Molecule 1 - ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PACYC
    Expression System Strain: BLR (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: COVALENTLY LINKED CLPX LACKING N-TERMINAL DOMAIN
    Gene: B0438, CLPX, JW0428, LOPC
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K-12

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCDEF
Biological Unit 2 (1x): A   EF
Biological Unit 3 (1x):  BCD  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric Unit (3, 19)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3SO413Ligand/IonSULFATE ION
Biological Unit 1 (2, 17)
No.NameCountTypeFull Name
1ADP4Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3SO413Ligand/IonSULFATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3SO44Ligand/IonSULFATE ION
Biological Unit 3 (2, 11)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3SO49Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:77 , VAL A:78 , ILE A:79 , PRO A:120 , GLY A:122 , SER A:123 , GLY A:124 , LYS A:125 , THR A:126 , LEU A:127 , LEU A:317 , ALA A:369 , SO4 B:709BINDING SITE FOR RESIDUE ADP A 600
02AC2SOFTWAREARG A:71 , LYS A:86BINDING SITE FOR RESIDUE SO4 A 700
03AC3SOFTWAREPHE A:140 , THR A:141 , MET A:142 , LYS A:168BINDING SITE FOR RESIDUE SO4 A 701
04AC4SOFTWAREGLY A:80 , GLN A:81 , GLU A:82 , ASN A:315BINDING SITE FOR RESIDUE SO4 A 705
05AC5SOFTWARETYR B:77 , VAL B:78 , ILE B:79 , PRO B:120 , THR B:121 , GLY B:122 , SER B:123 , GLY B:124 , LYS B:125 , THR B:126 , LEU B:127 , ILE B:325 , ALA B:369 , ARG B:370 , SO4 B:708 , MG B:901BINDING SITE FOR RESIDUE ADP B 601
06AC6SOFTWAREGLN B:81 , GLU B:82 , GLN B:83 , ASN B:315BINDING SITE FOR RESIDUE SO4 B 702
07AC7SOFTWAREGLY B:102 , ASP B:103 , THR B:104BINDING SITE FOR RESIDUE SO4 B 707
08AC8SOFTWAREADP B:601 , MG B:901BINDING SITE FOR RESIDUE SO4 B 708
09AC9SOFTWAREADP A:600 , HOH B:802BINDING SITE FOR RESIDUE SO4 B 709
10BC1SOFTWAREADP B:601 , SO4 B:708BINDING SITE FOR RESIDUE MG B 901
11BC2SOFTWAREPRO C:120 , THR C:121 , GLY C:122 , SER C:123 , GLY C:124 , LYS C:125 , THR C:126BINDING SITE FOR RESIDUE SO4 C 500
12BC3SOFTWARETHR C:141 , MET C:142 , LYS C:168BINDING SITE FOR RESIDUE SO4 C 703
13BC4SOFTWARELYS C:361 , ARG C:365BINDING SITE FOR RESIDUE SO4 C 704
14BC5SOFTWAREGLN C:81 , ASN C:315BINDING SITE FOR RESIDUE SO4 C 706
15BC6SOFTWARETYR D:77 , VAL D:78 , ILE D:79 , GLY D:122 , SER D:123 , GLY D:124 , LYS D:125 , THR D:126 , LEU D:127 , ILE D:325 , ALA D:369 , ARG D:370BINDING SITE FOR RESIDUE ADP D 602
16BC7SOFTWARELYS B:86 , HIS D:68 , ASN D:72BINDING SITE FOR RESIDUE SO4 D 710
17BC8SOFTWAREASP D:294BINDING SITE FOR RESIDUE MG D 900
18BC9SOFTWARETYR E:77 , VAL E:78 , ILE E:79 , PRO E:120 , GLY E:122 , SER E:123 , GLY E:124 , LYS E:125 , THR E:126 , LEU E:127 , ILE E:325 , PRO E:329 , ALA E:369 , ARG E:370BINDING SITE FOR RESIDUE ADP E 603
19CC1SOFTWAREPRO F:120 , THR F:121 , GLY F:122 , SER F:123 , GLY F:124 , LYS F:125 , THR F:126BINDING SITE FOR RESIDUE SO4 F 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HWS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HWS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HWS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HWS)

(-) Exons   (0, 0)

(no "Exon" information available for 3HWS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:320
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:351
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412 
           CLPX_ECOLI    63 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.............eeee.....hhhhhhhhhhhhh...eeeeehhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhheeeeehhhhhh......---hhhhhhhhhhhhhhhhhh.----------------.........eeeeee...hhhhhhhhhhh...------------...hhhhhhhh.hhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.......eeeehhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hws A  63 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNP---RDVSGEGVQQALLKLIEGT----------------FLQVDTSKILFICGGAFAGLDKVISHRVETGS------------DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY 413
                                    72        82        92       102       112       122       132       142       152       162       172       182       192   |   202       212     |   -         -  |    242       252       262   |     -      |282       292       302       312       322       332       342       352       362       372       382       392       402       412 
                                                                                                                                                               196 200               218              235                            266          279                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:315
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:353
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
           CLPX_ECOLI    62 SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 414
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee..ee.....eeee.....hhhhhhhhhhhhhh..eeeeehhhhh...hhhhhhhhhhhhhhhhh..hhhhhhh.eeeeehhhhhh.-------------hhhhhhhhhhhhh.---------......hhhhh.....eeeeee...hhhhhhhhhhh.----------------hhhhhhhh..hhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhh......eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hws B  62 SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR-------------EGVQQALLKLIEGT---------RKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVET----------------ASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYG 414
                                    71        81        91       101       111       121       131       141       151       161       171       181       191         -   |   211      |  -      |231       241       251       261  |      -       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                           191           205          218       228                                 264              281                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:307
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:351
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412 
           CLPX_ECOLI    63 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....------....eeee.....hhhhhhhhhhhhhh..eeeeehhhhh........hhhhhhhhhhhhh.hhhhhhhheeeeehhhhhh.---........hhhhhhhhhhhhhh...----------------........eeeeee...hhhhhhhhhh-------------------hhhhhhhh.hhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh......eeeehhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hws C  63 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDT------GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR---NPSITRDVSGEGVQQALLKLIEGTV----------------LQVDTSKILFICGGAFAGLDKVISHRV-------------------SEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIY 413
                                    72        82        92       102 |     112       122       132       142       152       162       172       182        |-  |    202       212      |  -         -   |   242       252       262         -       282       292       302       312       322       332       342       352       362       372       382       392       402       412 
                                                                   104    111                                                                             191 195                     219              236                       262                 282                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:316
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:354
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411    
           CLPX_ECOLI    62 SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh............eeee.....hhhhhhhhhhhhh...eeeeehhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhheeeeehhhhhh.----------hhhhhhhhhhhhhhhh......-------------.......eeeeee...hhhhhhhhhh...---------------.hhhhhhhh.hhhhhhhhh.hhhhhhh..eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......eeeehhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3hws D  62 SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR----------VSGEGVQQALLKLIEGTVAAVP-------------QVDTSKILFICGGAFAGLDKVISHRVETG---------------ASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYGK 415
                                    71        81        91       101       111       121       131       141       151       161       171       181       191         -|      211       221 |       -     | 241       251       261   |     -       281       291       301       311       321       331       341       351       361       371       381       391       401       411    
                                                                                                                                                           191        202                  223           237                         265             281                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:313
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:353
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
           CLPX_ECOLI    62 SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 414
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh...........eeeee.....hhhhhhhhhhhhh...eeeeehhhhh..hhhhhhhhhhhhhhhhhh..........eeeeehhhhhh.-------------hhhhhhhhhhhh.....-------------....hhhhheeeeee...hhhhhhhhhh....--------------.hhhhhhhh.hhhhhhhhh.hhhhhhh..eeee....hhhhhhhhhhh...hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...eeeehhhhhh......eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hws E  62 SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR-------------EGVQQALLKLIEGTVAA-------------FLQVDTSKILFICGGAFAGLDKVISHRVETGS--------------ASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYG 414
                                    71        81        91       101       111       121       131       141       151       161       171       181       191         -   |   211       221         -   |   241       251       261    |    -       281       291       301       311       321       331       341       351       361       371       381       391       401       411   
                                                                                                                                                           191           205             221           235                            266            281                                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:314
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:352
                                    72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412  
           CLPX_ECOLI    63 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYG 414
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..........-.eeee.....hhhhhhhhhhhhh...eeeee.....--..hhhhhhhhhhhhhhhhh.hhhhhhh.eeeeehhhhhh...------hhhhhhhhhhhhhhhhh.......----------..........eeeeee...hhhhhhhhh-------------------..hhhhhhh.hhhhhhhhh.hhhhhhhh.eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh....eeeeeehhhhhh......eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hws F  63 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGK-NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT--GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS------RDVSGEGVQQALLKLIEGTVAAVP----------EFLQVDTSKILFICGGAFAGLDKVISHR-------------------ASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSEPLLIYG 414
                                    72        82        92       102       112 |     122       132       142      |152       162       172       182       192|      202       212       222|        - |     242       252        |-         -       282       292       302       312       322       332       342       352       362       372       382       392       402       412  
                                                                           112 |                                149  |                                      193    200                    223        234                        261                 281                                                                                                                                     
                                                                             114                                   152
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HWS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HWS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HWS)

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (CLPX_ECOLI | P0A6H1)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004176    ATP-dependent peptidase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0051704    multi-organism process    A biological process which involves another organism of the same or different species.
    GO:0030163    protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0043335    protein unfolding    The process of assisting in the disassembly of non-covalent linkages in a protein or protein aggregate, often where the proteins are in a non-functional or denatured state.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CLPX_ECOLI | P0A6H1: 1ovx 2ds5 2ds6 2ds7 2ds8 3hte 4i34 4i4l 4i5o 4i63 4i81 4i9k

(-) Related Entries Specified in the PDB File

3hte CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE HEXAMERIC CLPX