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(-) Description

Title :  CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE HEXAMERIC CLPX
 
Authors :  S. E. Glynn, A. Martin, T. A. Baker, R. T. Sauer
Date :  11 Jun 09  (Deposition) - 24 Nov 09  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.03
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Clpx, Aaa+ Molecular Machine, Hexamer, Asymmetric, , Atp-Binding, Chaperone, Metal-Binding, Nucleotide-Binding, Stress Response, Zinc- Finger, Metal Binding Protein, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Glynn, A. Martin, A. R. Nager, T. A. Baker, R. T. Sauer
Structures Of Asymmetric Clpx Hexamers Reveal Nucleotide-Dependent Motions In A Aaa+ Protein-Unfolding Machine.
Cell(Cambridge, Mass. ) V. 139 744 2009
PubMed-ID: 19914167  |  Reference-DOI: 10.1016/J.CELL.2009.09.034

(-) Compounds

Molecule 1 - ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PACYC
    Expression System Strain: BLR (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: COVALENTLY LINKED CLPX RESIDUES 62-424
    Gene: B0438, CLPX, JW0428, LOPC
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K-12

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:120 , THR A:121 , GLY A:122 , SER A:123 , GLY A:124 , LYS A:125 , THR A:126BINDING SITE FOR RESIDUE SO4 A 500
2AC2SOFTWAREPRO B:120 , THR B:121 , GLY B:122 , SER B:123 , GLY B:124 , LYS B:125 , THR B:126BINDING SITE FOR RESIDUE SO4 B 500
3AC3SOFTWAREPRO C:120 , GLY C:122 , SER C:123 , GLY C:124 , LYS C:125 , THR C:126BINDING SITE FOR RESIDUE SO4 C 500
4AC4SOFTWAREGLY D:122 , SER D:123 , GLY D:124 , LYS D:125 , THR D:126BINDING SITE FOR RESIDUE SO4 D 500
5AC5SOFTWARETHR E:121 , GLY E:122 , SER E:123 , GLY E:124 , LYS E:125 , THR E:126BINDING SITE FOR RESIDUE SO4 E 500
6AC6SOFTWAREPRO F:120 , THR F:121 , GLY F:122 , SER F:123 , GLY F:124 , LYS F:125 , THR F:126BINDING SITE FOR RESIDUE SO4 F 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HTE)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ser A:105 -Asn A:106
2Ser B:105 -Asn B:106
3Ser B:278 -Asp B:279
4Ser D:105 -Asn D:106
5Ser E:105 -Asn E:106
6Pro E:416 -Glu E:417

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HTE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HTE)

(-) Exons   (0, 0)

(no "Exon" information available for 3HTE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:317
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:354
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411    
           CLPX_ECOLI    62 SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh............eeee.....hhhhhhhhhhhh....eeeeehhhhh-..hhhhhhhhhhhhhhhhhh.hhhhhhhheeeee.hhhhh.----------hhhhhhhhhhhhhhhh.---------------..........eeeeee...hhhhhhhhhhhhh..-----------....hhhhhh..hhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh......eeeehhhhhh......eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3hte A  62 SALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT-AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR----------VSGEGVQQALLKLIEGT---------------EFLQVDTSKILFICGGAFAGLDKVISHRVETGSG-----------DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGK 415
                                    71        81        91       101       111       121       131       141       151       161       171       181       191         -|      211      |  -         -  |    241       251       261     |   -       281       291       301       311       321       331       341       351       361       371       381       391       401       411    
                                                                                                                 149 |                                     191        202             218             234                              267         279                                                                                                                                        
                                                                                                                   151                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:309
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:350
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413
           CLPX_ECOLI    64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh............eeee.....hhhhhhhhhhhh....eeeeehhhhhh-..hhhhhhhhhhhhhhh...hhhhhhhheeeeehhhhhh.-----------hhhhhhhhhhhhhhh.-----------------........eeeeee...hhhhhhhhhhh..------------....hhhhhhh..hhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeehhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hte B  64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTE-GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR-----------SGEGVQQALLKLIEGT-----------------LQVDTSKILFICGGAFAGLDKVISHRVETG------------SDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
                                    73        83        93       103       113       123       133       143      |153       163       173       183       | -       203       213    |    -         -  |    243       253       263 |       -    |  283       293       303       313       323       333       343       353       363       373       383       393       403       413
                                                                                                                150 |                                    191         203            218               236                          265          278                                                                                                                                       
                                                                                                                  152                                                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:283
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:350
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413
           CLPX_ECOLI    64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh---------...eeee.....hhhhhhhhhhhh....eeeee.hhh-------...hhhhhhhhhh...hhhhhhh.eeeeehhhhhh.------------hhhhhhhhhhhhhh--------------------......eeeeee...hhhhhhhhhh-------------------hhhhhhhh.hhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......eeeehhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hte C  64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG---------KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL-------EDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR------------GEGVQQALLKLIEG--------------------VDTSKILFICGGAFAGLDKVISHRV-------------------SEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
                                    73        83        93        |-       113       123       133       143    |    -  |    163       173       183       | -         -|      213   |     -         -    |  243       253        |-         -       283       293       303       313       323       333       343       353       363       373       383       393       403       413
                                                                102       112                                 148     156                                191          204          217                  238                     262                 282                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:301
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:350
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413
           CLPX_ECOLI    64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh............eeee.....hhhhhhhhhhhh....eeeee.......-hhhhhhhhhhhhhhhh...hhhhhhhheeeeehhhhh....---------hhhhhhhhhhhhhhh.--------------------.....eeeeee...hhhhhhhhhhh------------------hhhhhhhh.hhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh-..eeeehhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hte D  64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEA-YVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS---------SGEGVQQALLKLIEGT--------------------DTSKILFICGGAFAGLDKVISHRVE------------------SEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM-DVEKVVIDESVIDGQSKPLLIY 413
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213    |    -         -     | 243       253       263         -       283       293       303       313       323       333       343       353       363       373       383      |393       403       413
                                                                                                                 151 |                                     193       203            218                  239                     263                282                                                                                                         390 |                     
                                                                                                                   153                                                                                                                                                                                                                                            392                     


Chain E from PDB  Type:PROTEIN  Length:302
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:356
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413      
           CLPX_ECOLI    64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh--..........eeee.....hhhhhhhhhhhh....eeeeehhhhh--..hhhhhhhhhhhhhhh...hhhhhhhheeeeehhhhhh.------------hhhhhhhhhhhhhh.--------------------.....eeeeee...hhhhhhhhhhh------------------hhhhhhh..hhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...eeeehhhhhh......eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hte E  64 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG--SNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT--GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR------------GEGVQQALLKLIEGT--------------------DTSKILFICGGAFAGLDKVISHRVE------------------SEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIYGKPEAQ 419
                                    73        83        93        |- |     113       123       133       143     | 153       163       173       183       | -         -|      213    |    -         -     | 243       253       263         -       283       293       303       313       323       333       343       353       363       373       383       393       403       413      
                                                                102  |                                         149  |                                    191          204           218                  239                     263                282                                                                                                                                         
                                                                   105                                            152                                                                                                                                                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:293
 aligned with CLPX_ECOLI | P0A6H1 from UniProtKB/Swiss-Prot  Length:424

    Alignment length:349
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404         
           CLPX_ECOLI    65 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh---------...eeee.....hhhhhhhhhhhh....eeeeehhhhh...hhhhhhhhhhhhhhhh...hhhhhhhheeeeehhhhhh-------------hhhhhhhhhhhhhh.--------------------.....eeeeee...hhhhhhhhhh--------------.....hhhhhhhhhhhhhhhhhh.hhhhhh...eeee....hhhhhhhhhhh...hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hte F  65 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG---------KSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS-------------GEGVQQALLKLIEGT--------------------DTSKILFICGGAFAGLDKVISHRV--------------KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQSKPLLIY 413
                                    74        84        94       | -       114       124       134       144       154       164       174       184     |   -       204       214   |     -         -    |  244       254       | -         -  |    284       294       304       314       324       334       344       354       364       374       384       394       404         
                                                               102       112                                                                           190           204           218                  239                    262            277
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HTE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HTE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HTE)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (CLPX_ECOLI | P0A6H1)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004176    ATP-dependent peptidase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0046983    protein dimerization activity    The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
    GO:0051082    unfolded protein binding    Interacting selectively and non-covalently with an unfolded protein.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0051704    multi-organism process    A biological process which involves another organism of the same or different species.
    GO:0030163    protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0006457    protein folding    The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
    GO:0043335    protein unfolding    The process of assisting in the disassembly of non-covalent linkages in a protein or protein aggregate, often where the proteins are in a non-functional or denatured state.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.

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  Cis Peptide Bonds
    Pro E:416 - Glu E:417   [ RasMol ]  
    Ser A:105 - Asn A:106   [ RasMol ]  
    Ser B:105 - Asn B:106   [ RasMol ]  
    Ser B:278 - Asp B:279   [ RasMol ]  
    Ser D:105 - Asn D:106   [ RasMol ]  
    Ser E:105 - Asn E:106   [ RasMol ]  
 

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        CLPX_ECOLI | P0A6H1: 1ovx 2ds5 2ds6 2ds7 2ds8 3hws 4i34 4i4l 4i5o 4i63 4i81 4i9k

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3HTE)