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(-) Description

Title :  CRYSTAL STRUCTURE OF FIMX EAL DOMAIN FROM PSEUDOMONAS AERUGINOSA
 
Authors :  M. V. A. S. Navarro, N. De, N. Bae, H. Sondermann
Date :  15 Jun 09  (Deposition) - 18 Aug 09  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Eal Phosphodiesterase, Biofilm, C-Di-Gmp, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. V. Navarro, N. De, N. Bae, Q. Wang, H. Sondermann
Structural Analysis Of The Ggdef-Eal Domain-Containing C-Di-Gmp Receptor Fimx.
Structure V. 17 1104 2009
PubMed-ID: 19679088  |  Reference-DOI: 10.1016/J.STR.2009.06.010

(-) Compounds

Molecule 1 - PROTEIN FIMX
    Atcc15692
    ChainsA
    EC Number3.1.4.52
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPSUMO
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneFIMX, PA4959
    Organism ScientificPSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid208964
    StrainPAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:16 , HOH A:116 , LEU A:478 , ASP A:507 , HIS A:533 , SER A:535BINDING SITE FOR RESIDUE GOL A 901
2AC2SOFTWAREHOH A:114 , HOH A:115 , PRO A:651 , PHE A:652 , GLN A:671 , GOL A:904BINDING SITE FOR RESIDUE GOL A 902
3AC3SOFTWAREHIS A:533 , LEU A:534 , GLN A:565 , SER A:595 , GLN A:596 , GOL A:904BINDING SITE FOR RESIDUE GOL A 903
4AC4SOFTWAREHOH A:49 , HOH A:94 , GLU A:475 , GLN A:565 , LYS A:616 , GOL A:902 , GOL A:903BINDING SITE FOR RESIDUE GOL A 904
5AC5SOFTWAREHOH A:6 , HOH A:42 , GLY A:441 , GLN A:486 , TYR A:673 , GLN A:676 , GLY A:677BINDING SITE FOR RESIDUE GOL A 905
6AC6SOFTWAREASN A:454 , PHE A:456 , LEU A:458 , LYS A:516BINDING SITE FOR RESIDUE GOL A 906

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HV9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HV9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HV9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HV9)

(-) Exons   (0, 0)

(no "Exon" information available for 3HV9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:261
 aligned with Q9HUK6_PSEAE | Q9HUK6 from UniProtKB/TrEMBL  Length:691

    Alignment length:261
                                   438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688 
         Q9HUK6_PSEAE   429 NPAEELAAAAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFSSG 689
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.hhhhhhhhhh....eeeeeeeeee......eeeeeeeee........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhh..hhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhhhh..eeeeeee....hhhhhhhhh...eeee.hhhhh...hhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh..ee................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hv9 A 429 NPAEELAAAAQRGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFSSG 689
                                   438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688 

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  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HV9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HV9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HV9)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9HUK6_PSEAE | Q9HUK6)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HUK6_PSEAE | Q9HUK63hv8 3hva 4afy 4ag0 4j40

(-) Related Entries Specified in the PDB File

3hv8 FIMX EAL DOMAIN C-DI-GMP BOUND
3hva FIMX GGDEF DOMAIN
3hvb FIMX DUAL-DOMAIN GGDEF-EAL MODULE