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(-) Description

Title :  CRYSTAL STRUCTURE OF FIMX EAL DOMAIN FROM PSEUDOMONAS AERUGINOSA BOUND TO C-DI-GMP
 
Authors :  M. V. A. S. Navarro, N. De, N. Bae, H. Sondermann
Date :  15 Jun 09  (Deposition) - 18 Aug 09  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Eal Phosphodiesterase, Biofilm, C-Di-Gmp, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. V. Navarro, N. De, N. Bae, Q. Wang, H. Sondermann
Structural Analysis Of The Ggdef-Eal Domain-Containing C-Di-Gmp Receptor Fimx.
Structure V. 17 1104 2009
PubMed-ID: 19679088  |  Reference-DOI: 10.1016/J.STR.2009.06.010

(-) Compounds

Molecule 1 - PROTEIN FIMX
    Atcc: 15692
    Chains: A
    EC Number: 3.1.4.52
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPSUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FIMX, PA4959
    Organism Scientific: PSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid: 208964
    Strain: PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1C2E1Ligand/Ion9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:1 , HOH A:2 , HOH A:8 , HOH A:55 , HOH A:57 , HOH A:66 , HOH A:79 , HOH A:124 , HOH A:125 , HOH A:163 , HOH A:164 , HOH A:203 , HOH A:206 , GLN A:461 , LEU A:477 , LEU A:478 , ARG A:479 , PRO A:490 , LEU A:494 , ASP A:507 , VAL A:510 , HIS A:533 , SER A:535 , GLN A:596 , GLN A:645 , PHE A:652 , GLU A:654 , GLY A:672 , TYR A:673 , PRO A:678BINDING SITE FOR RESIDUE C2E A 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HV8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HV8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HV8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HV8)

(-) Exons   (0, 0)

(no "Exon" information available for 3HV8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:242
 aligned with Q9HUK6_PSEAE | Q9HUK6 from UniProtKB/TrEMBL  Length:691

    Alignment length:247
                                   450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       
         Q9HUK6_PSEAE   441 GDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS 687
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....eeeeeeeeee......eeeeeeeeee.....eehhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh-----..eeeeee.hhhhhh..hhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhh..eeeeeee......hhhhhh....eeee.hhhhh...hhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhh..ee................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hv8 A 441 GDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAE-----HQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS 687
                                   450       460       470       480       490       500       510       520     | 530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       
                                                                                                         520   526
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HV8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HV8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HV8)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q9HUK6_PSEAE | Q9HUK6)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HUK6_PSEAE | Q9HUK6: 3hv9 3hva 4afy 4ag0 4j40

(-) Related Entries Specified in the PDB File

3hv9 FIMX EAL DOMAIN C-DI-GMP FREE
3hva FIMX GGDEF DOMAIN
3hvb FIMX DUAL-DOMAIN GGDEF-EAL MODULE