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(-) Description

Title :  HIGH PH NATIVE STRUCTURE OF LEUCINE AMINOPEPTIDASE FROM PSEUDOMONAS PUTIDA
 
Authors :  A. Kale, B. W. Dijkstra, T. Sonke, A. M. W. H Thunnissen
Date :  29 Apr 09  (Deposition) - 14 Apr 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Aminopeptidase, Hydrolase, Manganese, Metal-Binding, Protease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kale, T. Pijning, T. Sonke, B. W. Dijkstra, A. M. Thunnissen
Crystal Structure Of The Leucine Aminopeptidase From Pseudomonas Putida Reveals The Molecular Basis For Its Enantioselectivity And Broad Substrate Specificity.
J. Mol. Biol. V. 398 703 2010
PubMed-ID: 20359484  |  Reference-DOI: 10.1016/J.JMB.2010.03.042

(-) Compounds

Molecule 1 - CYTOSOL AMINOPEPTIDASE
    Chains: A, B, C, D, E, F
    EC Number: 3.4.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTRPLAP
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PEPA
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303
    Strain: ATCC12633
    Synonym: LEUCINE AMINOPEPTIDASE, LAP, LEUCYL AMINOPEPTIDASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 24)

Asymmetric/Biological Unit (4, 24)
No.NameCountTypeFull Name
1BCT6Ligand/IonBICARBONATE ION
2K6Ligand/IonPOTASSIUM ION
3MN6Ligand/IonMANGANESE (II) ION
4ZN6Ligand/IonZINC ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:267 , ASP A:272 , ASP A:290 , GLU A:351 , MN A:502 , BCT A:504 , HOH A:3681BINDING SITE FOR RESIDUE ZN A 501
02AC2SOFTWAREASP A:272 , ASP A:349 , GLU A:351 , ZN A:501 , HOH A:3681BINDING SITE FOR RESIDUE MN A 502
03AC3SOFTWARELEU A:189 , GLY A:190 , LEU A:192 , LYS A:288 , MET A:291 , HOH A:520BINDING SITE FOR RESIDUE K A 503
04AC4SOFTWARELYS A:267 , ALA A:350 , GLU A:351 , GLY A:352 , ARG A:353 , LEU A:377 , ZN A:501 , HOH A:3681BINDING SITE FOR RESIDUE BCT A 504
05AC5SOFTWARELYS B:267 , ASP B:272 , ASP B:290 , GLU B:351 , MN B:502 , BCT B:504 , HOH B:3682BINDING SITE FOR RESIDUE ZN B 501
06AC6SOFTWAREASP B:272 , ASP B:349 , GLU B:351 , ZN B:501 , HOH B:3682BINDING SITE FOR RESIDUE MN B 502
07AC7SOFTWARELEU B:189 , GLY B:190 , LEU B:192 , LYS B:288 , MET B:291 , HOH B:3687BINDING SITE FOR RESIDUE K B 503
08AC8SOFTWARELYS B:267 , ALA B:350 , GLU B:351 , GLY B:352 , ARG B:353 , LEU B:377 , ZN B:501 , HOH B:3682BINDING SITE FOR RESIDUE BCT B 504
09AC9SOFTWARELYS C:267 , ASP C:272 , ASP C:290 , GLU C:351 , MN C:502 , BCT C:504 , HOH C:3683BINDING SITE FOR RESIDUE ZN C 501
10BC1SOFTWAREASP C:272 , ASP C:349 , GLU C:351 , ZN C:501 , HOH C:3683BINDING SITE FOR RESIDUE MN C 502
11BC2SOFTWARELEU C:189 , GLY C:190 , LEU C:192 , LYS C:288 , MET C:291 , HOH C:2007BINDING SITE FOR RESIDUE K C 503
12BC3SOFTWARELYS C:267 , ALA C:350 , GLU C:351 , GLY C:352 , ARG C:353 , LEU C:377 , ZN C:501 , HOH C:3683BINDING SITE FOR RESIDUE BCT C 504
13BC4SOFTWARELYS D:267 , ASP D:272 , ASP D:290 , GLU D:351 , MN D:502 , BCT D:504 , HOH D:3684BINDING SITE FOR RESIDUE ZN D 501
14BC5SOFTWAREASP D:272 , ASP D:349 , GLU D:351 , ZN D:501 , HOH D:3684BINDING SITE FOR RESIDUE MN D 502
15BC6SOFTWARELEU D:189 , GLY D:190 , LEU D:192 , LYS D:288 , MET D:291 , HOH D:511BINDING SITE FOR RESIDUE K D 503
16BC7SOFTWARELYS D:267 , ASP D:349 , ALA D:350 , GLU D:351 , GLY D:352 , ARG D:353 , LEU D:377 , ZN D:501 , HOH D:3684BINDING SITE FOR RESIDUE BCT D 504
17BC8SOFTWARELYS E:267 , ASP E:272 , ASP E:290 , GLU E:351 , MN E:502 , BCT E:504 , HOH E:3685BINDING SITE FOR RESIDUE ZN E 501
18BC9SOFTWAREASP E:272 , ASP E:349 , GLU E:351 , ZN E:501 , HOH E:3685BINDING SITE FOR RESIDUE MN E 502
19CC1SOFTWARELEU E:189 , GLY E:190 , LEU E:192 , LYS E:288 , MET E:291 , HOH E:556BINDING SITE FOR RESIDUE K E 503
20CC2SOFTWARELYS E:267 , ALA E:350 , GLU E:351 , GLY E:352 , ARG E:353 , LEU E:377 , ZN E:501 , HOH E:3685BINDING SITE FOR RESIDUE BCT E 504
21CC3SOFTWARELYS F:267 , ASP F:272 , ASP F:290 , GLU F:351 , MN F:502 , HOH F:3686BINDING SITE FOR RESIDUE ZN F 501
22CC4SOFTWAREASP F:272 , ASP F:349 , GLU F:351 , ZN F:501 , HOH F:3686BINDING SITE FOR RESIDUE MN F 502
23CC5SOFTWARELEU F:189 , GLY F:190 , LEU F:192 , LYS F:288 , MET F:291 , HOH F:508BINDING SITE FOR RESIDUE K F 503
24CC6SOFTWARELYS F:267 , ALA F:350 , GLU F:351 , GLY F:352 , ARG F:353 , LEU F:377 , HOH F:3686BINDING SITE FOR RESIDUE BCT F 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H8F)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Arg A:482 -Pro A:483
2Arg B:482 -Pro B:483
3Arg C:482 -Pro C:483
4Arg D:482 -Pro D:483
5Arg E:482 -Pro E:483
6Arg F:482 -Pro F:483

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H8F)

(-) PROSITE Motifs  (1, 6)

Asymmetric/Biological Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTOSOL_APPS00631 Cytosol aminopeptidase signature.AMPA_PSEPU347-354
 
 
 
 
 		  6A:347-354
B:347-354
C:347-354
D:347-354
E:347-354
F:347-354

(-) Exons   (0, 0)

(no "Exon" information available for 3H8F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:497
 aligned with AMPA_PSEPU | O86436 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       
           AMPA_PSEPU     1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h8fA01 A:1-161 Leucine Aminopeptidase, subunit E, domain 1                                                                                                      ----------------3h8fA02 A:178-496 Zn peptidases                                                                                                                                                                                                                                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........eeeeeeee......hhhhhhhhhhh.hhhhhhhh..........eeeee......eeeeeeee.......hhhhhhhhhhhhhhhhhh....eeee............hhhhhhhhhhhhhhhh.................eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh.hhhhhhhhh......eeeeeeee........eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee..........eeee.....eeee.....hhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh..eee...hhhhhhhhh.....ee......hhhhhhhhhhhh......eeeee.....ee......ee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOSOL_----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h8f A   1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       


Chain B from PDB  Type:PROTEIN  Length:497
 aligned with AMPA_PSEPU | O86436 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       
           AMPA_PSEPU     1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h8fB01 B:1-161 Leucine Aminopeptidase, subunit E, domain 1                                                                                                      ----------------3h8fB02 B:178-496 Zn peptidases                                                                                                                                                                                                                                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........eeeeeeee......hhhhhhhhhhh.hhhhhhhh..........eeee.......eeeeeeee.......hhhhhhhhhhhhhhhhhh....eeee.............hhhhhhhhhhhhhh..................eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh.hhhhhhhhh......eeeeeeee........eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee..........eeee.....eeee.....hhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhh...eeeee.hhhhhhhhhhhhhhhh..eee...hhhhhhhhh.....ee......hhhhhhhhhhhh......eeeee.....ee......ee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOSOL_----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h8f B   1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       


Chain C from PDB  Type:PROTEIN  Length:497
 aligned with AMPA_PSEPU | O86436 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       
           AMPA_PSEPU     1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h8fC01 C:1-161 Leucine Aminopeptidase, subunit E, domain 1                                                                                                      ----------------3h8fC02 C:178-496 Zn peptidases                                                                                                                                                                                                                                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhh....eeeeee.....hhhhhhhhhhh.hhhhhhhhh.........eeeee........eeeeeeee.....hhhhhhhhhhhhhhhhhh....eeee.............hhhhhhhhhhhhhh..................eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh.hhhhhhhhh......eeeeeeee........eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee..........eeee.....eeee.....hhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh..eee...hhhhhhhhh.....ee......hhhhhhhhhhhh......eeeee.....ee......ee...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOSOL_----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h8f C   1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       


Chain D from PDB  Type:PROTEIN  Length:497
 aligned with AMPA_PSEPU | O86436 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       
           AMPA_PSEPU     1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h8fD01 D:1-161 Leucine Aminopeptidase, subunit E, domain 1                                                                                                      ----------------3h8fD02 D:178-496 Zn peptidases                                                                                                                                                                                                                                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhh....eeeeee.hhh.hhhhhhhhhhh.hhhhhhhh..........eeeee........eeeeeeee.....hhhhhhhhhhhhhhhhhh....eeee............hhhhhhhhhhhhhhh..................eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh....eeeeeehhhhhhhh.hhhhhhhhh......eeeeeeee........eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee..........eeee.....eeee.....hhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh..eee...hhhhhhhhh.....ee......hhhhhhhhhhhh......eeeee.....ee......ee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOSOL_----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h8f D   1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       


Chain E from PDB  Type:PROTEIN  Length:497
 aligned with AMPA_PSEPU | O86436 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       
           AMPA_PSEPU     1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h8fE01 E:1-161 Leucine Aminopeptidase, subunit E, domain 1                                                                                                      ----------------3h8fE02 E:178-496 Zn peptidases                                                                                                                                                                                                                                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........eeeeeeeee.....hhhhhhhhhhh.hhhhhhhhhh........eeee.......eeeeeeeeee.....hhhhhhhhhhhhhhhhhh....eeee.............hhhhhhhhhhhhhh..................eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..eeeeeehhhhhhhh.hhhhhhhhh......eeeeeeee........eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee..........eeee.....eeee.....hhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhh...eeeee.hhhhhhhhhhhhhhh...eee...hhhhhhhhh.....ee......hhhhhhhhhhhh......eeeee.....ee......ee...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOSOL_----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h8f E   1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       


Chain F from PDB  Type:PROTEIN  Length:497
 aligned with AMPA_PSEPU | O86436 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       
           AMPA_PSEPU     1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3h8fF01 F:1-161 Leucine Aminopeptidase, subunit E, domain 1                                                                                                      ----------------3h8fF02 F:178-496 Zn peptidases                                                                                                                                                                                                                                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhh....eeeeehhhhh.hhhhhhhhhhh.hhhhhhhhh.........eeeee........eeeeee.......hhhhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhh..................eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh...eeeeeehhhhhhhh.hhhhhhhhh......eeeeeeee........eeeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee..........eeee.....eeee.....hhhhhhhhhhhhhhhhh..eeeeee..hhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh..eee...hhhhhhhhh.....ee......hhhhhhhhhhhh......eeeee.....ee......ee...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CYTOSOL_----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h8f F   1 MELVVKSVAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDEALGDRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVEPRALKKVTLLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKADKPFVLVGKGITFDTGGISLKPGAGMDEMKYDMCGAASVFGTLRAVLELQLPVNLVCLLACAENMPSGGATRPGDIVTTMSGQTVEILNTDAEGRLVLCDTLTYAERFKPQAVIDIATLTGACIVALGSHTTGLMGNNDDLVGQLLDAGKRADDRAWQLPLFDEYQEQLDSPFADMGNIGGPKAGTITAGCFLSRFAKAYNWAHMDIAGTAWISGGKDKGATGRPVPLLTQYLLDRAGA 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H8F)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H8F)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (AMPA_PSEPU | O86436)
molecular function
    GO:0004177    aminopeptidase activity    Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0030145    manganese ion binding    Interacting selectively and non-covalently with manganese (Mn) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008235    metalloexopeptidase activity    Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
    GO:0019538    protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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  3.4.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AMPA_PSEPU | O86436: 3h8e 3h8g

(-) Related Entries Specified in the PDB File

1bll X-RAY CRYSTALLOGRAPHIC DETERMINATION OF THE STRUCTURE OF BOVINE LENS LEUCINE AMINOPEPTIDASE COMPLEXED WITH AMASTATIN: FORMULATION OF A CATALYTIC MECHANISM FEATURING A GEM-DIOLATE TRANSITION STATE
1gyt X-RAY STRUCTURE OF AMINOPEPTIDASE A FROM ESCHERICHIA COLI AND A MODEL FOR THE NUCLEOPROTEIN COMPLEX IN XER SITE- SPECIFIC RECOMBINATION
3h8e LOW PH NATIVE STRUCTURE OF LEUCINE AMINOPEPTIDASE FROM PSEUDOMONAS PUTIDA
3h8g BESTATIN COMPLEX STRUCTURE OF LEUCINE AMINOPEPTIDASE FROM PSEUDOMONAS PUTIDA