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3H8F
Asym. Unit
Info
Asym.Unit (467 KB)
Biol.Unit 1 (457 KB)
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(1)
Title
:
HIGH PH NATIVE STRUCTURE OF LEUCINE AMINOPEPTIDASE FROM PSEUDOMONAS PUTIDA
Authors
:
A. Kale, B. W. Dijkstra, T. Sonke, A. M. W. H Thunnissen
Date
:
29 Apr 09 (Deposition) - 14 Apr 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Aminopeptidase, Hydrolase, Manganese, Metal-Binding, Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Kale, T. Pijning, T. Sonke, B. W. Dijkstra, A. M. Thunnissen
Crystal Structure Of The Leucine Aminopeptidase From Pseudomonas Putida Reveals The Molecular Basis For Its Enantioselectivity And Broad Substrate Specificity.
J. Mol. Biol. V. 398 703 2010
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
1b: BICARBONATE ION (BCTb)
1c: BICARBONATE ION (BCTc)
1d: BICARBONATE ION (BCTd)
1e: BICARBONATE ION (BCTe)
1f: BICARBONATE ION (BCTf)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
2e: POTASSIUM ION (Ke)
2f: POTASSIUM ION (Kf)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BCT
6
Ligand/Ion
BICARBONATE ION
2
K
6
Ligand/Ion
POTASSIUM ION
3
MN
6
Ligand/Ion
MANGANESE (II) ION
4
ZN
6
Ligand/Ion
ZINC ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:267 , ASP A:272 , ASP A:290 , GLU A:351 , MN A:502 , BCT A:504 , HOH A:3681
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
ASP A:272 , ASP A:349 , GLU A:351 , ZN A:501 , HOH A:3681
BINDING SITE FOR RESIDUE MN A 502
03
AC3
SOFTWARE
LEU A:189 , GLY A:190 , LEU A:192 , LYS A:288 , MET A:291 , HOH A:520
BINDING SITE FOR RESIDUE K A 503
04
AC4
SOFTWARE
LYS A:267 , ALA A:350 , GLU A:351 , GLY A:352 , ARG A:353 , LEU A:377 , ZN A:501 , HOH A:3681
BINDING SITE FOR RESIDUE BCT A 504
05
AC5
SOFTWARE
LYS B:267 , ASP B:272 , ASP B:290 , GLU B:351 , MN B:502 , BCT B:504 , HOH B:3682
BINDING SITE FOR RESIDUE ZN B 501
06
AC6
SOFTWARE
ASP B:272 , ASP B:349 , GLU B:351 , ZN B:501 , HOH B:3682
BINDING SITE FOR RESIDUE MN B 502
07
AC7
SOFTWARE
LEU B:189 , GLY B:190 , LEU B:192 , LYS B:288 , MET B:291 , HOH B:3687
BINDING SITE FOR RESIDUE K B 503
08
AC8
SOFTWARE
LYS B:267 , ALA B:350 , GLU B:351 , GLY B:352 , ARG B:353 , LEU B:377 , ZN B:501 , HOH B:3682
BINDING SITE FOR RESIDUE BCT B 504
09
AC9
SOFTWARE
LYS C:267 , ASP C:272 , ASP C:290 , GLU C:351 , MN C:502 , BCT C:504 , HOH C:3683
BINDING SITE FOR RESIDUE ZN C 501
10
BC1
SOFTWARE
ASP C:272 , ASP C:349 , GLU C:351 , ZN C:501 , HOH C:3683
BINDING SITE FOR RESIDUE MN C 502
11
BC2
SOFTWARE
LEU C:189 , GLY C:190 , LEU C:192 , LYS C:288 , MET C:291 , HOH C:2007
BINDING SITE FOR RESIDUE K C 503
12
BC3
SOFTWARE
LYS C:267 , ALA C:350 , GLU C:351 , GLY C:352 , ARG C:353 , LEU C:377 , ZN C:501 , HOH C:3683
BINDING SITE FOR RESIDUE BCT C 504
13
BC4
SOFTWARE
LYS D:267 , ASP D:272 , ASP D:290 , GLU D:351 , MN D:502 , BCT D:504 , HOH D:3684
BINDING SITE FOR RESIDUE ZN D 501
14
BC5
SOFTWARE
ASP D:272 , ASP D:349 , GLU D:351 , ZN D:501 , HOH D:3684
BINDING SITE FOR RESIDUE MN D 502
15
BC6
SOFTWARE
LEU D:189 , GLY D:190 , LEU D:192 , LYS D:288 , MET D:291 , HOH D:511
BINDING SITE FOR RESIDUE K D 503
16
BC7
SOFTWARE
LYS D:267 , ASP D:349 , ALA D:350 , GLU D:351 , GLY D:352 , ARG D:353 , LEU D:377 , ZN D:501 , HOH D:3684
BINDING SITE FOR RESIDUE BCT D 504
17
BC8
SOFTWARE
LYS E:267 , ASP E:272 , ASP E:290 , GLU E:351 , MN E:502 , BCT E:504 , HOH E:3685
BINDING SITE FOR RESIDUE ZN E 501
18
BC9
SOFTWARE
ASP E:272 , ASP E:349 , GLU E:351 , ZN E:501 , HOH E:3685
BINDING SITE FOR RESIDUE MN E 502
19
CC1
SOFTWARE
LEU E:189 , GLY E:190 , LEU E:192 , LYS E:288 , MET E:291 , HOH E:556
BINDING SITE FOR RESIDUE K E 503
20
CC2
SOFTWARE
LYS E:267 , ALA E:350 , GLU E:351 , GLY E:352 , ARG E:353 , LEU E:377 , ZN E:501 , HOH E:3685
BINDING SITE FOR RESIDUE BCT E 504
21
CC3
SOFTWARE
LYS F:267 , ASP F:272 , ASP F:290 , GLU F:351 , MN F:502 , HOH F:3686
BINDING SITE FOR RESIDUE ZN F 501
22
CC4
SOFTWARE
ASP F:272 , ASP F:349 , GLU F:351 , ZN F:501 , HOH F:3686
BINDING SITE FOR RESIDUE MN F 502
23
CC5
SOFTWARE
LEU F:189 , GLY F:190 , LEU F:192 , LYS F:288 , MET F:291 , HOH F:508
BINDING SITE FOR RESIDUE K F 503
24
CC6
SOFTWARE
LYS F:267 , ALA F:350 , GLU F:351 , GLY F:352 , ARG F:353 , LEU F:377 , HOH F:3686
BINDING SITE FOR RESIDUE BCT F 504
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CYTOSOL_AP (A:347-354,B:347-354,C:347-354,D:34...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOSOL_AP
PS00631
Cytosol aminopeptidase signature.
AMPA_PSEPU
347-354
6
A:347-354
B:347-354
C:347-354
D:347-354
E:347-354
F:347-354
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_3h8fA02 (A:178-496)
1b: CATH_3h8fE02 (E:178-496)
1c: CATH_3h8fF02 (F:178-496)
1d: CATH_3h8fB02 (B:178-496)
1e: CATH_3h8fC02 (C:178-496)
1f: CATH_3h8fD02 (D:178-496)
2a: CATH_3h8fA01 (A:1-161)
2b: CATH_3h8fE01 (E:1-161)
2c: CATH_3h8fF01 (F:1-161)
2d: CATH_3h8fB01 (B:1-161)
2e: CATH_3h8fC01 (C:1-161)
2f: CATH_3h8fD01 (D:1-161)
View:
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Classes
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(
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(
)
Topologies
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Pseudomonas putida. Organism_taxid: 303. Strain: atcc12633.
(2)
1a
3h8fA02
A:178-496
1b
3h8fE02
E:178-496
1c
3h8fF02
F:178-496
1d
3h8fB02
B:178-496
1e
3h8fC02
C:178-496
1f
3h8fD02
D:178-496
Topology
:
Leucine Aminopeptidase, subunit E; domain 1
(21)
Homologous Superfamily
:
Leucine Aminopeptidase, subunit E, domain 1
(21)
Pseudomonas putida. Organism_taxid: 303. Strain: atcc12633.
(2)
2a
3h8fA01
A:1-161
2b
3h8fE01
E:1-161
2c
3h8fF01
F:1-161
2d
3h8fB01
B:1-161
2e
3h8fC01
C:1-161
2f
3h8fD01
D:1-161
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Pfam Domains
(0, 0)
Info
all PFAM domains
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