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(-) Description

Title :  CRYSTAL STRUCTURE OF APO ACID-BETA-GLUCOSIDASE PH 4.5
 
Authors :  R. L. Lieberman
Date :  02 Apr 09  (Deposition) - 05 May 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Hydrolase, Alternative Initiation, Disease Mutation, Disulfide Bond, Gaucher Disease, Glycoprotein, Glycosidase, Ichthyosis, Lipid Metabolism, Lysosome, Membrane, Sphingolipid Metabolism (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. L. Lieberman, J. A. D'Aquino, D. Ringe, G. A. Petsko
Effects Of Ph And Iminosugar Pharmacological Chaperones On Lysosomal Glycosidase Structure And Stability.
Biochemistry V. 48 4816 2009
PubMed-ID: 19374450  |  Reference-DOI: 10.1021/BI9002265

(-) Compounds

Molecule 1 - GLUCOSYLCERAMIDASE
    ChainsA, B, C, D
    EC Number3.2.1.45
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System CommonCHINESE HAMSTER
    GeneGBA, GC, GLUC
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBETA-GLUCOCEREBROSIDASE, ACID BETA-GLUCOSIDASE, D-GLUCOSYL- N-ACYLSPHINGOSINE GLUCOHYDROLASE, ALGLUCERASE, IMIGLUCERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 56)

Asymmetric/Biological Unit (2, 56)
No.NameCountTypeFull Name
1NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO450Ligand/IonPHOSPHATE ION

(-) Sites  (56, 56)

Asymmetric Unit (56, 56)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:11 , SER A:12 , ARG A:353 , SER A:356 , TRP A:357 , ASP A:358BINDING SITE FOR RESIDUE PO4 A 499
02AC2SOFTWAREARG A:44 , SER A:45 , HOH A:559BINDING SITE FOR RESIDUE PO4 A 500
03AC3SOFTWARETHR A:63 , GLY A:64 , GLN A:440 , HOH A:572 , LYS C:473BINDING SITE FOR RESIDUE PO4 A 501
04AC4SOFTWARELYS A:79 , TRP A:228 , ARG A:277 , HIS A:306BINDING SITE FOR RESIDUE PO4 A 502
05AC5SOFTWARELYS A:473 , THR C:63 , GLY C:64 , GLN C:440BINDING SITE FOR RESIDUE PO4 A 503
06AC6SOFTWAREARG A:44 , SER A:465 , TYR A:487BINDING SITE FOR RESIDUE PO4 A 498
07AC7SOFTWARETHR A:272 , HIS A:273BINDING SITE FOR RESIDUE PO4 A 504
08AC8SOFTWAREHIS A:290 , LYS A:293 , HOH A:523 , HOH A:526BINDING SITE FOR RESIDUE PO4 A 505
09AC9SOFTWAREGLU A:254 , ARG A:257BINDING SITE FOR RESIDUE PO4 A 506
10BC1SOFTWAREARG A:277 , HIS A:306 , HOH A:563BINDING SITE FOR RESIDUE PO4 A 507
11BC2SOFTWARESER A:45 , ARG A:47BINDING SITE FOR RESIDUE PO4 A 508
12BC3SOFTWAREGLU A:72 , GLU D:254 , ARG D:257BINDING SITE FOR RESIDUE PO4 A 509
13BC4SOFTWAREARG A:170 , PRO A:428BINDING SITE FOR RESIDUE PO4 A 510
14BC5SOFTWAREARG A:395 , ASN D:392 , TRP D:393 , ARG D:395BINDING SITE FOR RESIDUE PO4 A 511
15BC6SOFTWARETHR A:187 , LYS A:198 , GLY A:199BINDING SITE FOR RESIDUE PO4 A 512
16BC7SOFTWAREILE A:5 , ASN A:19 , THR A:21BINDING SITE FOR RESIDUE NAG A 513
17BC8SOFTWARETYR A:11 , TRP A:348 , GLU A:349 , GLN A:350 , ARG A:353BINDING SITE FOR RESIDUE PO4 A 514
18BC9SOFTWARETYR B:11 , SER B:12 , ARG B:353 , SER B:356 , TRP B:357 , ASP B:358BINDING SITE FOR RESIDUE PO4 B 500
19CC1SOFTWAREARG B:44 , SER B:45BINDING SITE FOR RESIDUE PO4 B 501
20CC2SOFTWARELYS B:79 , TRP B:228 , HIS B:306 , HOH B:534BINDING SITE FOR RESIDUE PO4 B 502
21CC3SOFTWAREGLY B:193 , LYS B:194 , SER B:242 , GLY B:243 , HOH B:524BINDING SITE FOR RESIDUE PO4 B 503
22CC4SOFTWARELYS B:321 , ARG B:329 , ARG C:329 , LEU C:330BINDING SITE FOR RESIDUE PO4 B 504
23CC5SOFTWAREARG B:44 , SER B:465 , TYR B:487BINDING SITE FOR RESIDUE PO4 B 505
24CC6SOFTWAREARG B:277 , VAL B:305 , HIS B:306BINDING SITE FOR RESIDUE PO4 B 498
25CC7SOFTWAREILE B:158 , PRO B:159 , HIS B:162BINDING SITE FOR RESIDUE PO4 B 499
26CC8SOFTWAREGLN B:226 , HIS B:273 , ASN B:275BINDING SITE FOR RESIDUE PO4 B 506
27CC9SOFTWAREALA B:1 , ARG B:2 , SER B:25 , HOH B:518BINDING SITE FOR RESIDUE PO4 B 507
28DC1SOFTWAREASN B:146 , HOH B:545 , HOH B:548 , LEU C:96BINDING SITE FOR RESIDUE NAG B 508
29DC2SOFTWAREILE B:5 , ASN B:19BINDING SITE FOR RESIDUE NAG B 509
30DC3SOFTWARELYS C:79 , TRP C:228 , ARG C:277 , HIS C:306BINDING SITE FOR RESIDUE PO4 C 499
31DC4SOFTWARETYR C:11 , SER C:12 , ARG C:353 , SER C:356 , TRP C:357 , ASP C:358BINDING SITE FOR RESIDUE PO4 C 500
32DC5SOFTWAREARG C:44 , SER C:45 , HOH C:552BINDING SITE FOR RESIDUE PO4 C 501
33DC6SOFTWAREARG C:257 , HOH C:534 , HOH C:535BINDING SITE FOR RESIDUE PO4 C 498
34DC7SOFTWAREGLN C:226 , PHE C:227 , THR C:272 , HIS C:273 , VAL C:276BINDING SITE FOR RESIDUE PO4 C 502
35DC8SOFTWAREARG C:44 , TYR C:487 , HOH C:556BINDING SITE FOR RESIDUE PO4 C 503
36DC9SOFTWAREARG C:277 , HIS C:306 , HOH C:561BINDING SITE FOR RESIDUE PO4 C 504
37EC1SOFTWAREHIS C:290 , LYS C:293 , HOH C:523 , HOH C:562 , HOH C:569BINDING SITE FOR RESIDUE PO4 C 505
38EC2SOFTWAREALA C:438 , ASN C:442 , HOH C:545 , HOH C:547BINDING SITE FOR RESIDUE PO4 C 506
39EC3SOFTWAREILE C:158 , PRO C:159 , HIS C:162 , HOH C:516 , HOH C:559BINDING SITE FOR RESIDUE PO4 C 507
40EC4SOFTWAREPHE C:75 , HIS C:328 , HIS C:374BINDING SITE FOR RESIDUE PO4 C 508
41EC5SOFTWAREARG C:170 , PRO C:428BINDING SITE FOR RESIDUE PO4 C 509
42EC6SOFTWAREILE C:5 , ASN C:19 , THR C:21BINDING SITE FOR RESIDUE NAG C 510
43EC7SOFTWARETYR C:11 , TRP C:348 , GLU C:349 , GLN C:350 , ARG C:353BINDING SITE FOR RESIDUE PO4 C 511
44EC8SOFTWARETYR D:11 , SER D:12 , ARG D:353 , SER D:356 , TRP D:357 , ASP D:358BINDING SITE FOR RESIDUE PO4 D 499
45EC9SOFTWAREARG D:44 , SER D:45BINDING SITE FOR RESIDUE PO4 D 500
46FC1SOFTWARELYS D:79 , TRP D:228 , ARG D:277 , HIS D:306 , HOH D:560BINDING SITE FOR RESIDUE PO4 D 501
47FC2SOFTWAREGLY D:193 , LYS D:194 , SER D:242 , GLY D:243 , HOH D:531BINDING SITE FOR RESIDUE PO4 D 502
48FC3SOFTWAREGLN D:226 , HIS D:273 , ASN D:275BINDING SITE FOR RESIDUE PO4 D 498
49FC4SOFTWAREARG D:44 , TYR D:487BINDING SITE FOR RESIDUE PO4 D 503
50FC5SOFTWAREARG D:277 , VAL D:305 , HIS D:306 , HOH D:554BINDING SITE FOR RESIDUE PO4 D 504
51FC6SOFTWAREILE D:158 , PRO D:159 , HIS D:162 , HOH D:541BINDING SITE FOR RESIDUE PO4 D 505
52FC7SOFTWAREARG D:262BINDING SITE FOR RESIDUE PO4 D 506
53FC8SOFTWAREARG A:329 , LYS D:321 , ARG D:329BINDING SITE FOR RESIDUE PO4 D 507
54FC9SOFTWARETHR D:187 , LYS D:198 , GLY D:199 , HOH D:533 , HOH D:542BINDING SITE FOR RESIDUE PO4 D 508
55GC1SOFTWARELEU A:96 , ASN D:146 , HOH D:517 , HOH D:545BINDING SITE FOR RESIDUE NAG D 509
56GC2SOFTWAREASN D:19 , TYR D:22 , HOH D:561BINDING SITE FOR RESIDUE NAG D 510

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:4 -A:16
2A:18 -A:23
3B:4 -B:16
4B:18 -B:23
5C:4 -C:16
6C:18 -C:23
7D:4 -D:16
8D:18 -D:23

(-) Cis Peptide Bonds  (14, 14)

Asymmetric/Biological Unit
No.Residues
1Leu A:288 -Pro A:289
2Tyr A:313 -Leu A:314
3Gly A:390 -Pro A:391
4Gly B:62 -Thr B:63
5Leu B:288 -Pro B:289
6Gly B:344 -Ser B:345
7Lys B:346 -Phe B:347
8Gly B:390 -Pro B:391
9Leu C:288 -Pro C:289
10Ala C:318 -Pro C:319
11Gly C:390 -Pro C:391
12Leu D:288 -Pro D:289
13Trp D:348 -Glu D:349
14Gly D:390 -Pro D:391

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (156, 624)

Asymmetric/Biological Unit (156, 624)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
001UniProtVAR_063066K46EGLCM_HUMANPolymorphism142761046A/B/C/DK7E
002UniProtVAR_003255V54LGLCM_HUMANDisease (GD)121908302A/B/C/DV15L
003UniProtVAR_032394C55SGLCM_HUMANDisease (GD)773007510A/B/C/DC16S
004UniProtVAR_032395D63NGLCM_HUMANDisease (GD1)  ---A/B/C/DD24N
005UniProtVAR_003256F76VGLCM_HUMANDisease (GD)  ---A/B/C/DF37V
006UniProtVAR_009033E80KGLCM_HUMANDisease (GD2)1141808A/B/C/DE41K
007UniProtVAR_003257T82IGLCM_HUMANDisease (GD)1141811A/B/C/DT43I
008UniProtVAR_003258G85EGLCM_HUMANDisease (GD)77829017A/B/C/DG46E
009UniProtVAR_032197R87QGLCM_HUMANDisease (GD)78769774A/B/C/DR48Q
010UniProtVAR_003259R87WGLCM_HUMANDisease (GD)1141814A/B/C/DR48W
011UniProtVAR_032396M92TGLCM_HUMANPolymorphism3205619A/B/C/DM53T
012UniProtVAR_003260K118NGLCM_HUMANDisease (GD)121908312A/B/C/DK79N
013UniProtVAR_032397A129TGLCM_HUMANDisease (GD)  ---A/B/C/DA90T
014UniProtVAR_009034S146LGLCM_HUMANDisease (GD)758447515A/B/C/DS107L
015UniProtVAR_003261G152EGLCM_HUMANDisease (GD)  ---A/B/C/DG113E
016UniProtVAR_032398N156DGLCM_HUMANDisease (GD)  ---A/B/C/DN117D
017UniProtVAR_032399I158SGLCM_HUMANDisease (GD1)77834747A/B/C/DI119S
018UniProtVAR_003262I158TGLCM_HUMANDisease (GD)  ---A/B/C/DI119T
019UniProtVAR_003263R159QGLCM_HUMANDisease (GD)79653797A/B/C/DR120Q
020UniProtVAR_003264R159WGLCM_HUMANDisease (GD)397515515A/B/C/DR120W
021UniProtVAR_032198P161LGLCM_HUMANDisease (GD)79637617A/B/C/DP122L
022UniProtVAR_003265P161SGLCM_HUMANDisease (GD)121908299A/B/C/DP122S
023UniProtVAR_032199M162VGLCM_HUMANDisease (GD)377325220A/B/C/DM123V
024UniProtVAR_032200D166VGLCM_HUMANDisease (GD)79796061A/B/C/DD127V
025UniProtVAR_009035R170CGLCM_HUMANDisease (GD2)398123530A/B/C/DR131C
026UniProtVAR_009036R170LGLCM_HUMANDisease (GD)80356763A/B/C/DR131L
027UniProtVAR_032400T173IGLCM_HUMANDisease (GD)78657146A/B/C/DT134I
028UniProtVAR_003266T173PGLCM_HUMANDisease (GD)  ---A/B/C/DT134P
029UniProtVAR_032401A175EGLCM_HUMANDisease (GD)79660787A/B/C/DA136E
030UniProtVAR_003267D179HGLCM_HUMANDisease (GD)147138516A/B/C/DD140H
031UniProtVAR_003268K196QGLCM_HUMANDisease (GD)121908297A/B/C/DK157Q
032UniProtVAR_009037P198LGLCM_HUMANDisease (GD)80222298A/B/C/DP159L
033UniProtVAR_032402P198TGLCM_HUMANDisease (GD)  ---A/B/C/DP159T
034UniProtVAR_032201I200NGLCM_HUMANDisease (GD)77933015A/B/C/DI161N
035UniProtVAR_010059I200SGLCM_HUMANDisease (GD)77933015A/B/C/DI161S
036UniProtVAR_032403H201PGLCM_HUMANDisease (GD)76500263A/B/C/DH162P
037UniProtVAR_032404R209CGLCM_HUMANDisease (GD)398123532A/B/C/DR170C
038UniProtVAR_003269R209PGLCM_HUMANDisease (GD)  ---A/B/C/DR170P
039UniProtVAR_032202L213FGLCM_HUMANDisease (GD)374591570A/B/C/DL174F
040UniProtVAR_003270A215DGLCM_HUMANDisease (GD)  ---A/B/C/DA176D
041UniProtVAR_003271P217SGLCM_HUMANDisease (GD)  ---A/B/C/DP178S
042UniProtVAR_032405P221LGLCM_HUMANDisease (GD1)80205046A/B/C/DP182L
043UniProtVAR_003272P221TGLCM_HUMANDisease (GD)866075757A/B/C/DP182T
044UniProtVAR_003273W223RGLCM_HUMANDisease (GD)61748906A/B/C/DW184R
045UniProtVAR_032203L224FGLCM_HUMANDisease (GD)  ---A/B/C/DL185F
046UniProtVAR_003275N227KGLCM_HUMANDisease (GD)381418A/B/C/DN188K
047UniProtVAR_003274N227SGLCM_HUMANDisease (GD)364897A/B/C/DN188S
048UniProtVAR_010060G228VGLCM_HUMANDisease (GD)78911246A/B/C/DG189V
049UniProtVAR_009038A229EGLCM_HUMANDisease (GD)75636769A/B/C/DA190E
050UniProtVAR_032406A229TGLCM_HUMANDisease (GD)  ---A/B/C/DA190T
051UniProtVAR_032407V230EGLCM_HUMANDisease (GD1)381427A/B/C/DV191E
052UniProtVAR_003276V230GGLCM_HUMANDisease (GD1)381427A/B/C/DV191G
053UniProtVAR_032204G232EGLCM_HUMANDisease (GD)  ---A/B/C/DG193E
054UniProtVAR_003277G234EGLCM_HUMANDisease (GD)74462743A/B/C/DG195E
055UniProtVAR_009039G234WGLCM_HUMANDisease (GD)  ---A/B/C/DG195W
056UniProtVAR_003278S235PGLCM_HUMANDisease (GD)1064644A/B/C/DS196P
057UniProtVAR_032205K237EGLCM_HUMANDisease (GD)773409311A/B/C/DK198E
058UniProtVAR_010061G241EGLCM_HUMANDisease (GD)77451368A/B/C/DG202E
059UniProtVAR_003279G241RGLCM_HUMANDisease (GD)398123534A/B/C/DG202R
060UniProtVAR_010062Y244CGLCM_HUMANDisease (GD)76026102A/B/C/DY205C
061UniProtVAR_003280Y251HGLCM_HUMANDisease (GD)121908300A/B/C/DY212H
062UniProtVAR_003281F252IGLCM_HUMANDisease (GD)381737A/B/C/DF213I
063UniProtVAR_003282F255YGLCM_HUMANDisease (GD)74500255A/B/C/DF216Y
064UniProtVAR_032408T270RGLCM_HUMANDisease (GD)76725886A/B/C/DT231R
065UniProtVAR_003283S276PGLCM_HUMANDisease (GD)  ---A/B/C/DS237P
066UniProtVAR_032409F290LGLCM_HUMANDisease (GD)121908313A/B/C/DF251L
067UniProtVAR_009040H294QGLCM_HUMANDisease (GD1)367968666A/B/C/DH255Q
068UniProtVAR_003284R296QGLCM_HUMANDisease (GD)78973108A/B/C/DR257Q
069UniProtVAR_009041F298LGLCM_HUMANDisease (GD)  ---A/B/C/DF259L
070UniProtVAR_032206L303IGLCM_HUMANDisease (GD)  ---A/B/C/DL264I
071UniProtVAR_010063G304DGLCM_HUMANDisease (GD)80116658A/B/C/DG265D
072UniProtVAR_003285P305RGLCM_HUMANDisease (GD)79215220A/B/C/DP266R
073UniProtVAR_032410S310GGLCM_HUMANPolymorphism1057942A/B/C/DS271G
074UniProtVAR_010064S310NGLCM_HUMANDisease (GD)74731340A/B/C/DS271N
075UniProtVAR_003286R324CGLCM_HUMANDisease (GD)765633380A/B/C/DR285C
076UniProtVAR_009042R324HGLCM_HUMANDisease (GD)79696831A/B/C/DR285H
077UniProtVAR_003287P328LGLCM_HUMANDisease (GD)121908298A/B/C/DP289L
078UniProtVAR_003288K342IGLCM_HUMANDisease (GD)77714449A/B/C/DK303I
079UniProtVAR_009043Y343CGLCM_HUMANDisease (GD)77321207A/B/C/DY304C
080UniProtVAR_003289A348VGLCM_HUMANDisease (GD)78396650A/B/C/DA309V
081UniProtVAR_009044H350RGLCM_HUMANPolymorphism78198234A/B/C/DH311R
082UniProtVAR_003290W351CGLCM_HUMANDisease (GD)121908304A/B/C/DW312C
083UniProtVAR_003291Y352HGLCM_HUMANDisease (GD)  ---A/B/C/DY313H
084UniProtVAR_003292D354HGLCM_HUMANDisease (GD)398123526A/B/C/DD315H
085UniProtVAR_003293A357DGLCM_HUMANDisease (GD)78188205A/B/C/DA318D
086UniProtVAR_003294T362IGLCM_HUMANDisease (GD)76539814A/B/C/DT323I
087UniProtVAR_003295L363PGLCM_HUMANUnclassified (GD)  ---A/B/C/DL324P
088UniProtVAR_003296G364RGLCM_HUMANDisease (GD)121908305A/B/C/DG325R
089UniProtVAR_003297E365KGLCM_HUMANDisease (GD)2230288A/B/C/DE326K
090UniProtVAR_032411R368HGLCM_HUMANPolymorphism1064648A/B/C/DR329H
091UniProtVAR_009045A380TGLCM_HUMANDisease (GD)781306264A/B/C/DA341T
092UniProtVAR_003298C381GGLCM_HUMANDisease (GD)121908306A/B/C/DC342G
093UniProtVAR_032207E388KGLCM_HUMANDisease (GD)  ---A/B/C/DE349K
094UniProtVAR_010065V391LGLCM_HUMANDisease (GD)398123527A/B/C/DV352L
095UniProtVAR_010066R392GGLCM_HUMANDisease (GD)121908308A/B/C/DR353G
096UniProtVAR_032208R392WGLCM_HUMANDisease (GD)  ---A/B/C/DR353W
097UniProtVAR_003299R398QGLCM_HUMANDisease (GD)74979486A/B/C/DR359Q
098UniProtVAR_032412M400IGLCM_HUMANDisease (GD)149487315A/B/C/DM361I
099UniProtVAR_032209Y402CGLCM_HUMANDisease (GD)76228122A/B/C/DY363C
100UniProtVAR_003300S403TGLCM_HUMANDisease (GD)121908307A/B/C/DS364T
101UniProtVAR_010067S405GGLCM_HUMANDisease (GD)  ---A/B/C/DS366G
102UniProtVAR_009046S405NGLCM_HUMANDisease (GD)  ---A/B/C/DS366N
103UniProtVAR_003301T408MGLCM_HUMANDisease (GD)2230289A/B/C/DT369M
104UniProtVAR_003302N409SGLCM_HUMANDisease (GD1)76763715A/B/C/DN370S
105UniProtVAR_032210L410VGLCM_HUMANDisease (GD)121908314A/B/C/DL371V
106UniProtVAR_010068V414LGLCM_HUMANDisease (GD)398123528A/B/C/DV375L
107UniProtVAR_003303G416SGLCM_HUMANDisease (GD)121908311A/B/C/DG377S
108UniProtVAR_003304W417GGLCM_HUMANDisease (GD)  ---A/B/C/DW378G
109UniProtVAR_003305D419AGLCM_HUMANDisease (GD)77284004A/B/C/DD380A
110UniProtVAR_032211D419HGLCM_HUMANDisease (GD)  ---A/B/C/DD380H
111UniProtVAR_003306D419NGLCM_HUMANDisease (GD)  ---A/B/C/DD380N
112UniProtVAR_032212N421KGLCM_HUMANDisease (GD)  ---A/B/C/DN382K
113UniProtVAR_010069P426LGLCM_HUMANDisease (GD)  ---A/B/C/DP387L
114UniProtVAR_003307G428EGLCM_HUMANDisease (GD)  ---A/B/C/DG389E
115UniProtVAR_032213G429RGLCM_HUMANDisease (GD)  ---A/B/C/DG390R
116UniProtVAR_003308P430LGLCM_HUMANDisease (GD)76910485A/B/C/DP391L
117UniProtVAR_003309N431IGLCM_HUMANDisease (GD)77738682A/B/C/DN392I
118UniProtVAR_009047W432RGLCM_HUMANDisease (GD)  ---A/B/C/DW393R
119UniProtVAR_003310V433LGLCM_HUMANDisease (GD)80356769A/B/C/DV394L
120UniProtVAR_003311N435TGLCM_HUMANDisease (GD1)75385858A/B/C/DN396T
121UniProtVAR_032214F436SGLCM_HUMANDisease (GD)75243000A/B/C/DF397S
122UniProtVAR_009048V437FGLCM_HUMANPolymorphism121908310A/B/C/DV398F
123UniProtVAR_010070V437LGLCM_HUMANDisease (GD3)  ---A/B/C/DV398L
124UniProtVAR_003312D438NGLCM_HUMANDisease (GD)  ---A/B/C/DD399N
125UniProtVAR_032413D438YGLCM_HUMANDisease (GD)  ---A/B/C/DD399Y
126UniProtVAR_010071P440LGLCM_HUMANDisease (GD1)74598136A/B/C/DP401L
127UniProtVAR_032414I441FGLCM_HUMANDisease (GD)  ---A/B/C/DI402F
128UniProtVAR_010072I441TGLCM_HUMANDisease (GD)75564605A/B/C/DI402T
129UniProtVAR_003313D448HGLCM_HUMANDisease (GD)1064651A/B/C/DD409H
130UniProtVAR_003314D448VGLCM_HUMANDisease (GD)77369218A/B/C/DD409V
131UniProtVAR_010073F450IGLCM_HUMANDisease (GD)  ---A/B/C/DF411I
132UniProtVAR_003315Y451HGLCM_HUMANDisease (GD)  ---A/B/C/DY412H
133UniProtVAR_010074K452QGLCM_HUMANDisease (GD)  ---A/B/C/DK413Q
134UniProtVAR_003316P454RGLCM_HUMANDisease (GD)121908295A/B/C/DP415R
135UniProtVAR_032215M455VGLCM_HUMANDisease (GD)  ---A/B/C/DM416V
136UniProtVAR_003317F456VGLCM_HUMANDisease (GD)  ---A/B/C/DF417V
137UniProtVAR_003318Y457CGLCM_HUMANDisease (GD)74752878A/B/C/DY418C
138UniProtVAR_032415G460DGLCM_HUMANDisease (GD1)  ---A/B/C/DG421D
139UniProtVAR_003319K464EGLCM_HUMANDisease (GD)  ---A/B/C/DK425E
140UniProtVAR_063067D482NGLCM_HUMANPolymorphism75671029A/B/C/DD443N
141UniProtVAR_003321L483PGLCM_HUMANDisease (GD2)421016A/B/C/DL444P
142UniProtVAR_003320L483RGLCM_HUMANDisease (GD)421016A/B/C/DL444R
143UniProtVAR_003322A485PGLCM_HUMANDisease (GD)  ---A/B/C/DA446P
144UniProtVAR_032416H490RGLCM_HUMANDisease (GD)76071730A/B/C/DH451R
145UniProtVAR_003323A495PGLCM_HUMANDisease (GD)368060A/B/C/DA456P
146UniProtVAR_063068V497LGLCM_HUMANPolymorphism  ---A/B/C/DV458L
147UniProtVAR_032216L500PGLCM_HUMANDisease (GD)  ---A/B/C/DL461P
148UniProtVAR_009049N501KGLCM_HUMANDisease (GD)  ---A/B/C/DN462K
149UniProtVAR_003324R502CGLCM_HUMANDisease (GD)80356771A/B/C/DR463C
150UniProtVAR_032217R502PGLCM_HUMANDisease (GD)  ---A/B/C/DR463P
151UniProtVAR_003325L509PGLCM_HUMANPolymorphism  ---A/B/C/DL470P
152UniProtVAR_009050D513YGLCM_HUMANDisease (GD2)  ---A/B/C/DD474Y
153UniProtVAR_003326G517SGLCM_HUMANDisease (GD)121908301A/B/C/DG478S
154UniProtVAR_010075T530IGLCM_HUMANDisease (GD3)78016673A/B/C/DT491I
155UniProtVAR_003327R535CGLCM_HUMANDisease (GD)747506979A/B/C/DR496C
156UniProtVAR_003328R535HGLCM_HUMANDisease (GD)75822236A/B/C/DR496H

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GXD)

(-) Exons   (9, 36)

Asymmetric/Biological Unit (9, 36)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3bENST000003683733bENSE00001890492chr1:155211025-155210877149GLCM_HUMAN1-990--
1.4aENST000003683734aENSE00001231103chr1:155210508-15521042188GLCM_HUMAN10-39300--
1.6cENST000003683736cENSE00001231096chr1:155209868-155209677192GLCM_HUMAN39-103654A:1-64
B:1-64
C:1-64
D:1-64
64
64
64
64
1.7bENST000003683737bENSE00001231088chr1:155209553-155209407147GLCM_HUMAN103-152504A:64-113
B:64-113
C:64-113
D:64-113
50
50
50
50
1.8eENST000003683738eENSE00001775630chr1:155208441-155208308134GLCM_HUMAN152-196454A:113-157
B:113-157
C:113-157
D:113-157
45
45
45
45
1.9bENST000003683739bENSE00001697320chr1:155208097-155207925173GLCM_HUMAN197-254584A:158-215
B:158-215
C:158-215
D:158-215
58
58
58
58
1.10ENST0000036837310ENSE00001667013chr1:155207369-155207132238GLCM_HUMAN254-333804A:215-294
B:215-294
C:215-294
D:215-294
80
80
80
80
1.11bENST0000036837311bENSE00001231060chr1:155206260-155206036225GLCM_HUMAN334-408754A:295-369
B:295-369
C:295-369
D:295-369
75
75
75
75
1.12aENST0000036837312aENSE00001231052chr1:155205635-155205472164GLCM_HUMAN409-463554A:370-424
B:370-424
C:370-424
D:370-424
55
55
55
55
1.12dENST0000036837312dENSE00001780706chr1:155205102-155204986117GLCM_HUMAN463-502404A:424-463
B:424-463
C:424-463
D:424-463
40
40
40
40
1.13dENST0000036837313dENSE00001917720chr1:155204891-155204243649GLCM_HUMAN502-536354A:463-497
B:463-497
C:463-497
D:463-497
35
35
35
35

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:497
 aligned with GLCM_HUMAN | P04062 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:497
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       
           GLCM_HUMAN    40 ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ 536
               SCOP domains d3gxda1 A:1-77,A:432-497 Glucosylceramidase                                  d3gxda2 A:78-431 Glucosylceramidase, catalytic domain                                                                                                                                                                                                                                                                                                             d3gxda1 A:1-77,A:432-497 Glucosylceramidase                        SCOP domains
               CATH domains ----3gxdA01 A:5-30,A:78-431   ----3gxdA02 A:35-77,A:432-497                  3gxdA01 A:5-30,A:78-431 Glycosidases                                                                                                                                                                                                                                                                                                                              3gxdA02 A:35-77,A:432-497 Golgi alpha-mannosidase II               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.......eeee.................eeeeeeee......eeeeee.........eeeeeeeeeeeee..eeeee.hhhhhhhhhh.hhhhhhhhhhhhhh.......eeeeee..........................hhhhhhhhhhhhhhhhhhh....eeeeee...hhhhh................hhhhhhhhhhhhhhhhhhhhh.....eee...hhhhhhh..........hhhhhhhhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhh...eeeeee..........hhhhhhhhh...eeeeeee..............hhhhhhhhhhhhhhhhhh.eeeeeeee...................eeeehhhheeeehhhhhhhhhhhh......eeeeeee......eeeeee.....eeeeeee.....eeeeeee...eeeeeee...eeeeeee... Sec.struct. author
             SAPs(SNPs) (1) ------E-------LS-------N------------V---K-I--E-Q----T-------------------------N----------T----------------L-----E---D-SQ-LV---V---C--I-E---H----------------Q-L-NP-------C---F-D-S---L-RF--KVEE-E-EP-E---E--C------HI--Y--------------R-----P-------------L---Q-Q-L----IDR----G-------------C---L-------------IC----V-RCH-H--D----IPRK--H-----------TG------K--LG-----Q-I-CT-G--MSV---L-SG-A-K----L-ERLIRL-TSFN-LF------H-IHQ-RVVC--D---E-----------------NP-P----R----P-L--PKC------P---Y---S------------I----C- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------W----------------------------------------------------------------------TW-S--------L--P------------------------T-S--------P-----------T-----S-TG---W------R--------------------------------------------------------------------N-------------H-------------------------------------------------------------------W------------N-------------H-----------------LY--T------V----------------------------------R------------------P--------------------------------H- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.6c  PDB: A:1-64 UniProt: 39-103 [INCOMPLETE]             ------------------------------------------------Exon 1.8e  PDB: A:113-157 UniProt: 152-196   ---------------------------------------------------------Exon 1.10  PDB: A:215-294 UniProt: 254-333                                      Exon 1.11b  PDB: A:295-369 UniProt: 334-408                                Exon 1.12a  PDB: A:370-424 UniProt: 409-463            --------------------------------------Exon 1.13d  PDB: A:463-497          Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------Exon 1.7b  PDB: A:64-113 UniProt: 103-152         --------------------------------------------Exon 1.9b  PDB: A:158-215 UniProt: 197-254                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12d  PDB: A:424-463              ---------------------------------- Transcript 1 (2)
                 3gxd A   1 ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       

Chain B from PDB  Type:PROTEIN  Length:497
 aligned with GLCM_HUMAN | P04062 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:497
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       
           GLCM_HUMAN    40 ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ 536
               SCOP domains d3gxdb1 B:1-77,B:432-497 Glucosylceramidase                                  d3gxdb2 B:78-431 Glucosylceramidase, catalytic domain                                                                                                                                                                                                                                                                                                             d3gxdb1 B:1-77,B:432-497 Glucosylceramidase                        SCOP domains
               CATH domains ----3gxdB01 B:5-30,B:78-431   ----3gxdB02 B:35-77,B:432-497                  3gxdB01 B:5-30,B:78-431 Glycosidases                                                                                                                                                                                                                                                                                                                              3gxdB02 B:35-77,B:432-497 Golgi alpha-mannosidase II               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.......eeee.................eeeeeeee......eeeeee.........eeeeeeeeeeeee..eeeee.hhhhhhhhhh.hhhhhhhhhhhhhh.......eeeeee..........................hhhhhhhhhhhhhhhhhhh....eeeeee...hhhhh................hhhhhhhhhhhhhhhhhhhh......eee...hhhhhhh..........hhhhhhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhhhhhhhhh...eeeeeee.........hhhhhhhhh...eeeeeeee.............hhhhhhhhhhhhhhhhhh...eeeeee...................eeeehhhheeeehhhhhhhhhhhh......eeeeeee......eeeeee.....eeeeeee.....eeeeeee...eeeeeee...eeeeeee... Sec.struct. author
             SAPs(SNPs) (1) ------E-------LS-------N------------V---K-I--E-Q----T-------------------------N----------T----------------L-----E---D-SQ-LV---V---C--I-E---H----------------Q-L-NP-------C---F-D-S---L-RF--KVEE-E-EP-E---E--C------HI--Y--------------R-----P-------------L---Q-Q-L----IDR----G-------------C---L-------------IC----V-RCH-H--D----IPRK--H-----------TG------K--LG-----Q-I-CT-G--MSV---L-SG-A-K----L-ERLIRL-TSFN-LF------H-IHQ-RVVC--D---E-----------------NP-P----R----P-L--PKC------P---Y---S------------I----C- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------W----------------------------------------------------------------------TW-S--------L--P------------------------T-S--------P-----------T-----S-TG---W------R--------------------------------------------------------------------N-------------H-------------------------------------------------------------------W------------N-------------H-----------------LY--T------V----------------------------------R------------------P--------------------------------H- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.6c  PDB: B:1-64 UniProt: 39-103 [INCOMPLETE]             ------------------------------------------------Exon 1.8e  PDB: B:113-157 UniProt: 152-196   ---------------------------------------------------------Exon 1.10  PDB: B:215-294 UniProt: 254-333                                      Exon 1.11b  PDB: B:295-369 UniProt: 334-408                                Exon 1.12a  PDB: B:370-424 UniProt: 409-463            --------------------------------------Exon 1.13d  PDB: B:463-497          Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------Exon 1.7b  PDB: B:64-113 UniProt: 103-152         --------------------------------------------Exon 1.9b  PDB: B:158-215 UniProt: 197-254                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12d  PDB: B:424-463              ---------------------------------- Transcript 1 (2)
                 3gxd B   1 ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       

Chain C from PDB  Type:PROTEIN  Length:497
 aligned with GLCM_HUMAN | P04062 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:497
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       
           GLCM_HUMAN    40 ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ 536
               SCOP domains d3gxdc1 C:1-77,C:432-497 Glucosylceramidase                                  d3gxdc2 C:78-431 Glucosylceramidase, catalytic domain                                                                                                                                                                                                                                                                                                             d3gxdc1 C:1-77,C:432-497 Glucosylceramidase                        SCOP domains
               CATH domains ----3gxdC01 C:5-30,C:78-431   ----3gxdC02 C:35-77,C:432-497                  3gxdC01 C:5-30,C:78-431 Glycosidases                                                                                                                                                                                                                                                                                                                              3gxdC02 C:35-77,C:432-497 Golgi alpha-mannosidase II               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.......eeee.................eeeeeeee......eeeeee.........eeeeeeeeeeeee..eeeee.hhhhhhhhh..hhhhhhhhhhhhhh.......eeeeee..........................hhhhhhhhhhhhhhhhhhh....eeeeee...hhhhh................hhhhhhhhhhhhhhhhhhhhh.....eee.....hhhhh..........hhhhhhhhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhhhhhh...eeeeeee..............hhhhhhhhhhhhhhhhhh.eeeeeeee...................eeeehhhheeeehhhhhhhhhhhh......eeeeeee......eeeeee.....eeeeeee.....eeeeeee...eeeeeee...eeeeeee... Sec.struct. author
             SAPs(SNPs) (1) ------E-------LS-------N------------V---K-I--E-Q----T-------------------------N----------T----------------L-----E---D-SQ-LV---V---C--I-E---H----------------Q-L-NP-------C---F-D-S---L-RF--KVEE-E-EP-E---E--C------HI--Y--------------R-----P-------------L---Q-Q-L----IDR----G-------------C---L-------------IC----V-RCH-H--D----IPRK--H-----------TG------K--LG-----Q-I-CT-G--MSV---L-SG-A-K----L-ERLIRL-TSFN-LF------H-IHQ-RVVC--D---E-----------------NP-P----R----P-L--PKC------P---Y---S------------I----C- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------W----------------------------------------------------------------------TW-S--------L--P------------------------T-S--------P-----------T-----S-TG---W------R--------------------------------------------------------------------N-------------H-------------------------------------------------------------------W------------N-------------H-----------------LY--T------V----------------------------------R------------------P--------------------------------H- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.6c  PDB: C:1-64 UniProt: 39-103 [INCOMPLETE]             ------------------------------------------------Exon 1.8e  PDB: C:113-157 UniProt: 152-196   ---------------------------------------------------------Exon 1.10  PDB: C:215-294 UniProt: 254-333                                      Exon 1.11b  PDB: C:295-369 UniProt: 334-408                                Exon 1.12a  PDB: C:370-424 UniProt: 409-463            --------------------------------------Exon 1.13d  PDB: C:463-497          Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------Exon 1.7b  PDB: C:64-113 UniProt: 103-152         --------------------------------------------Exon 1.9b  PDB: C:158-215 UniProt: 197-254                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12d  PDB: C:424-463              ---------------------------------- Transcript 1 (2)
                 3gxd C   1 ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       

Chain D from PDB  Type:PROTEIN  Length:497
 aligned with GLCM_HUMAN | P04062 from UniProtKB/Swiss-Prot  Length:536

    Alignment length:497
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       
           GLCM_HUMAN    40 ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ 536
               SCOP domains d3gxdd1 D:1-77,D:432-497 Glucosylceramidase                                  d3gxdd2 D:78-431 Glucosylceramidase, catalytic domain                                                                                                                                                                                                                                                                                                             d3gxdd1 D:1-77,D:432-497 Glucosylceramidase                        SCOP domains
               CATH domains ----3gxdD01 D:5-30,D:78-431   ----3gxdD02 D:35-77,D:432-497                  3gxdD01 D:5-30,D:78-431 Glycosidases                                                                                                                                                                                                                                                                                                                              3gxdD02 D:35-77,D:432-497 Golgi alpha-mannosidase II               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.......eeee.................eeeeeeee....eeeeeeeeee.......eeeeeeeeeeeee..eeeee.hhhhhhhhhh.hhhhhhhhhhhhhh.......eeeeee..........................hhhhhhhhhhhhhhhhhhh....eeeeee...hhhhh................hhhhhhhhhhhhhhhhhhhhh.....eee.....hhhhh..........hhhhhhhhhhhhhhhhhhhh.....eeeeeeee.hhhhhhhhhhhhhhhhhh...eeeeeee.........hhhhhhhhh...eeeeeeee.............hhhhhhhhhhhhhhhhhh.eeeeeeee...................eeeehhhheeeehhhhhhhhhhhh......eeeeeee......eeeeee.....eeeeeee.....eeeeeee...eeeeeee...eeeeeee... Sec.struct. author
             SAPs(SNPs) (1) ------E-------LS-------N------------V---K-I--E-Q----T-------------------------N----------T----------------L-----E---D-SQ-LV---V---C--I-E---H----------------Q-L-NP-------C---F-D-S---L-RF--KVEE-E-EP-E---E--C------HI--Y--------------R-----P-------------L---Q-Q-L----IDR----G-------------C---L-------------IC----V-RCH-H--D----IPRK--H-----------TG------K--LG-----Q-I-CT-G--MSV---L-SG-A-K----L-ERLIRL-TSFN-LF------H-IHQ-RVVC--D---E-----------------NP-P----R----P-L--PKC------P---Y---S------------I----C- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------W----------------------------------------------------------------------TW-S--------L--P------------------------T-S--------P-----------T-----S-TG---W------R--------------------------------------------------------------------N-------------H-------------------------------------------------------------------W------------N-------------H-----------------LY--T------V----------------------------------R------------------P--------------------------------H- SAPs(SNPs) (2)
             SAPs(SNPs) (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N--------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.6c  PDB: D:1-64 UniProt: 39-103 [INCOMPLETE]             ------------------------------------------------Exon 1.8e  PDB: D:113-157 UniProt: 152-196   ---------------------------------------------------------Exon 1.10  PDB: D:215-294 UniProt: 254-333                                      Exon 1.11b  PDB: D:295-369 UniProt: 334-408                                Exon 1.12a  PDB: D:370-424 UniProt: 409-463            --------------------------------------Exon 1.13d  PDB: D:463-497          Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------Exon 1.7b  PDB: D:64-113 UniProt: 103-152         --------------------------------------------Exon 1.9b  PDB: D:158-215 UniProt: 197-254                ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12d  PDB: D:424-463              ---------------------------------- Transcript 1 (2)
                 3gxd D   1 ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHRQ 497
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
1a3gxdA01A:5-30,A:78-431
1b3gxdB01B:5-30,B:78-431
1c3gxdC01C:5-30,C:78-431
1d3gxdD01D:5-30,D:78-431
(-)
Class: Mainly Beta (13760)
2a3gxdA02A:35-77,A:432-497
2b3gxdB02B:35-77,B:432-497
2c3gxdC02C:35-77,C:432-497
2d3gxdD02D:35-77,D:432-497

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GXD)

(-) Gene Ontology  (36, 36)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (GLCM_HUMAN | P04062)
molecular function
    GO:0004348    glucosylceramidase activity    Catalysis of the reaction: D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0009267    cellular response to starvation    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment.
    GO:0071356    cellular response to tumor necrosis factor    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus.
    GO:0046513    ceramide biosynthetic process    The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid.
    GO:0006680    glucosylceramide catabolic process    The chemical reactions and pathways resulting in the breakdown of glucosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of glucose by a ceramide group.
    GO:0006687    glycosphingolipid metabolic process    The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0043407    negative regulation of MAP kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of MAP kinase activity.
    GO:0050728    negative regulation of inflammatory response    Any process that stops, prevents, or reduces the frequency, rate or extent of the inflammatory response.
    GO:0032715    negative regulation of interleukin-6 production    Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-6 production.
    GO:0016239    positive regulation of macroautophagy    Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation.
    GO:0035307    positive regulation of protein dephosphorylation    Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein.
    GO:1903052    positive regulation of proteolysis involved in cellular protein catabolic process    Any process that activates or increases the frequency, rate or extent of proteolysis involved in cellular protein catabolic process.
    GO:0016241    regulation of macroautophagy    Any process that modulates the frequency, rate or extent of macroautophagy.
    GO:0032434    regulation of proteasomal ubiquitin-dependent protein catabolic process    Any process that modulates the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
    GO:0033561    regulation of water loss via skin    A process that modulates the rate or extent of water loss from an organism via the skin.
    GO:0043627    response to estrogen    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics.
    GO:0051384    response to glucocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0009268    response to pH    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution.
    GO:0033574    response to testosterone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a testosterone stimulus.
    GO:0097066    response to thyroid hormone    A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyroid hormone stimulus.
    GO:0043589    skin morphogenesis    The process in which the anatomical structures of the skin are generated and organized. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner, sensitive and vascular dermis (cutis, corium or true skin) composed mostly of connective tissue.
    GO:0006665    sphingolipid metabolic process    The chemical reactions and pathways involving sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).
    GO:0046512    sphingosine biosynthetic process    The chemical reactions and pathways resulting in the formation of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues.
    GO:0023021    termination of signal transduction    The signaling process in which signal transduction is brought to an end rather than being reversibly modulated.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0043202    lysosomal lumen    The volume enclosed within the lysosomal membrane.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GLCM_HUMAN | P040621ogs 1y7v 2f61 2j25 2nsx 2nt0 2nt1 2v3d 2v3e 2v3f 2vt0 2wcg 2wkl 2xwd 2xwe 3gxf 3gxi 3gxm 3ke0 3keh 3rik 3ril

(-) Related Entries Specified in the PDB File

3gxf STRUCTURE OF ACID-BETA-GLUCOSIDASE WITH ISOFAGOMINE AT NEUTRAL PH
3gxi STRUCTURE OF ACID-BETA-GLUCOSIDASE AT PH 5.5
3gxm STRUCTURE OF ACID-BETA-GLUCOSIDASE AT PH 4.5