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(-) Description

Title :  STRUCTURE OF THE HOMODIMERIC WXG-100 FAMILY PROTEIN FROM STREPTOCOCCUS AGALACTIAE
 
Authors :  C. Poulsen, F. Gries, M. Wilmanns, Y. H. Song
Date :  31 Mar 09  (Deposition) - 08 Sep 10  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Wxg Motif, Four-Helical Bundle, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Poulsen, S. Panjikar, S. J. Holton, M. Wilmanns, Y. H. Song
Wxg100 Protein Superfamily Consists Of Three Subfamilies An Exhibits An Alpha-Helical C-Terminal Conserved Residue Pattern.
Plos One V. 9 89313 2014
PubMed-ID: 24586681  |  Reference-DOI: 10.1371/JOURNAL.PONE.0089313

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN SAG1039
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: BL21 DE3 RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SAG1039
    Organism Scientific: STREPTOCOCCUS AGALACTIAE SEROGROUP V
    Organism Taxid: 208435
    Strain: 2603V/R
    Synonym: SAG1039

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3GVM)

(-) Sites  (0, 0)

(no "Site" information available for 3GVM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GVM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GVM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GVM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GVM)

(-) Exons   (0, 0)

(no "Exon" information available for 3GVM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
 aligned with ESX2_STRA5 | Q8DZR0 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:96
                              1                                                                                             
                              |      8        18        28        38        48        58        68        78        88      
            ESX2_STRA5    - --MAQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQI 94
               SCOP domains d3gvma_ A: automated matches                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  3gvm A  0 GAMSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQI 95
                                     9        19        29        39        49        59        69        79        89      


Chain B from PDB  Type:PROTEIN  Length:94
 aligned with ESX2_STRA5 | Q8DZR0 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:94
                                    12        22        32        42        52        62        72        82        92    
            ESX2_STRA5    3 QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQISG 96
               SCOP domains d3gvmb_ B: automated matches                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  3gvm B  4 QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQISG 97
                                    13        23        33        43        53        63        73        83        93    


Chain C from PDB  Type:PROTEIN  Length:97
 aligned with ESX2_STRA5 | Q8DZR0 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:97
                              1                                                                                              
                              |      8        18        28        38        48        58        68        78        88       
            ESX2_STRA5    - --MAQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQIS 95
               SCOP domains d3gvmc_ C: automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  3gvm C  0 GAMSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQIS 96
                                     9        19        29        39        49        59        69        79        89       


Chain D from PDB  Type:PROTEIN  Length:94
 aligned with ESX2_STRA5 | Q8DZR0 from UniProtKB/Swiss-Prot  Length:96

    Alignment length:94
                                    12        22        32        42        52        62        72        82        92    
            ESX2_STRA5    3 QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQISG 96
               SCOP domains d3gvmd_ D: automated matches                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  3gvm D  4 QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQISG 97
                                    13        23        33        43        53        63        73        83        93
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GVM)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  3gvm
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ESX2_STRA5 | Q8DZR0: 3gwk

(-) Related Entries Specified in the PDB File

1wa8 NMR STRUCTURE OF THE CFP-10/ESAT-6 COMPLEX FROM M. TUBERCULOSIS
2vrz CRYSTAL STRUCTURE OF ESXA FROM STAPHYLOCOCCUS AUREUS
2vs0 CRYSTAL STRUCTURE OF ESXA FROM STAPHYLOCOCCUS AUREUS
3fav CRYSTAL STRUCTURE OF THE CFP-10/ESAT-6 COMPLEX FROM M. TUBERCULOSIS
3gwk CRYSTAL STRUCTURE OF THE HOMODIMERIC WXG-100 FAMILY PROTEIN FROM STREPTOCOCCUS AGALACTIAE AT 1.30A