3G8A - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   T. THERMOPHILUS 16S RRNA G527 METHYLTRANSFERASE IN COMPLEX WITH ADOHCY IN SPACE GROUP P61

Authors :   H. Demirci, S. T. Gregory, R. Belardinelli, C. Gualerzi, A. E. Dahlberg

Date :   11 Feb 09 (Deposition) - 30 Jun 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)

Keywords :   Methyltransferase, 16S Rrna Methyltransferase, Translation, Rrna Processing, S-Adenosyl-L-Methionine, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. T. Gregory, H. Demirci, R. Belardinelli, T. Monshupanee, C. Gualerzi, A. E. Dahlberg, G. Jogl
Structural And Functional Studies Of The Thermus Thermophilus 16S Rrna Methyltransferase Rsmg
Rna V. 15 1693 2009
PubMed-ID: 19622680 | Reference-DOI: 10.1261/RNA.1652709

Molecule 1 - RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE G
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.1.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET26B
	Expression System Strain	:	BL21 (DE3)STAR
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GIDB, RSMG, TTHA1971
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8
	Synonym	:	16S RRNA 7-METHYLGUANOSINE METHYLTRANSFERASE, 16S RRNA M7G METHYLTRANSFERASE, GLUCOSE-INHIBITED DIVISION PROTEIN B

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 12)

No.	Name	Count	Type	Full Name
1	HIC	6	Mod. Amino Acid	4-METHYL-HISTIDINE
2	SAH	6	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	HIC	1	Mod. Amino Acid	4-METHYL-HISTIDINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	HIC	1	Mod. Amino Acid	4-METHYL-HISTIDINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	HIC	1	Mod. Amino Acid	4-METHYL-HISTIDINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	HIC	1	Mod. Amino Acid	4-METHYL-HISTIDINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 5 (2, 2)

No.	Name	Count	Type	Full Name
1	HIC	1	Mod. Amino Acid	4-METHYL-HISTIDINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 6 (2, 2)

No.	Name	Count	Type	Full Name
1	HIC	1	Mod. Amino Acid	4-METHYL-HISTIDINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:88 , THR A:89 , GLY A:90 , PHE A:93 , ASP A:111 , ALA A:112 , THR A:113 , LYS A:116 , GLY A:137 , ARG A:138 , ALA A:139 , GLU A:140 , ARG A:158 , ALA A:159 , HOH A:310 , HOH A:475	BINDING SITE FOR RESIDUE SAH A 303
2	AC2	SOFTWARE	GLY B:88 , THR B:89 , GLY B:90 , PHE B:93 , ASP B:111 , ALA B:112 , THR B:113 , GLY B:137 , ARG B:138 , ALA B:139 , GLU B:140 , ARG B:158 , HOH B:336 , HOH B:435 , HOH B:452	BINDING SITE FOR RESIDUE SAH B 303
3	AC3	SOFTWARE	GLY C:88 , THR C:89 , GLY C:90 , PHE C:93 , ASP C:111 , ALA C:112 , THR C:113 , GLY C:137 , ARG C:138 , ALA C:139 , GLU C:140 , ARG C:158 , ALA C:159 , HOH C:322 , HOH C:378	BINDING SITE FOR RESIDUE SAH C 303
4	AC4	SOFTWARE	GLY D:88 , THR D:89 , GLY D:90 , PHE D:93 , ASP D:111 , ALA D:112 , THR D:113 , LYS D:116 , GLY D:137 , ARG D:138 , ALA D:139 , GLU D:140 , ARG D:158 , ALA D:159 , HOH D:338 , HOH D:411 , HOH D:518	BINDING SITE FOR RESIDUE SAH D 303
5	AC5	SOFTWARE	GLY E:88 , THR E:89 , GLY E:90 , PHE E:93 , ASP E:111 , ALA E:112 , THR E:113 , GLY E:137 , ARG E:138 , ALA E:139 , GLU E:140 , ARG E:158 , ALA E:159 , HOH E:307 , HOH E:333 , HOH E:466 , HOH E:471	BINDING SITE FOR RESIDUE SAH E 303
6	AC6	SOFTWARE	GLY F:88 , THR F:89 , GLY F:90 , PHE F:93 , ASP F:111 , ALA F:112 , THR F:113 , GLY F:137 , ARG F:138 , ALA F:139 , GLU F:140 , ARG F:158 , HOH F:326 , HOH F:434	BINDING SITE FOR RESIDUE SAH F 303

Asymmetric Unit

No.	Residues
1	A:164	-	A:249
2	B:164	-	B:249
3	C:164	-	C:249
4	D:164	-	D:249
5	E:164	-	E:249
6	F:164	-	F:249

Asymmetric Unit

No.	Residues
1	Phe A:93	-	Pro A:94
2	Tyr A:236	-	Pro A:237
3	Phe B:93	-	Pro B:94
4	Tyr B:236	-	Pro B:237
5	Phe C:93	-	Pro C:94
6	Tyr C:236	-	Pro C:237
7	Phe D:93	-	Pro D:94
8	Tyr D:236	-	Pro D:237
9	Phe E:93	-	Pro E:94
10	Tyr E:236	-	Pro E:237
11	Phe F:93	-	Pro F:94
12	Tyr F:236	-	Pro F:237

(no "SAP(SNP)/Variant" information available for 3G8A)

(no "PROSITE Motif" information available for 3G8A)

(no "Exon" information available for 3G8A)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:236
 aligned with RSMG_THET8 | Q9LCY2 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
           RSMG_THET8     1 MFHGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g8aA00 A:1-249 Vaccinia Virus protein VP39                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh-------------hhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhh........eeeeeee...hhhhhhhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhh.eeeeeeeeee......eeeeeeeee............hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g8a A   1 MFhGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQ-------------EEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
                              |     10        20        30        40   |     -       |60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
                              |                                       44            58                                                                                                                                                                                               
                              3-HIC

Chain B from PDB  Type:PROTEIN  Length:239
 aligned with RSMG_THET8 | Q9LCY2 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
           RSMG_THET8     1 MFHGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g8aB00 B:1-249 Vaccinia Virus protein VP39                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh----------hhhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhh........eeeeeee...hhhhhhhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhh.eeeeeeeeee......eeeeeeeee............hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g8a B   1 MFhGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEA----------GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
                              |     10        20        30        40     |   -      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
                              3-HIC                                     46         57

Chain C from PDB  Type:PROTEIN  Length:238
 aligned with RSMG_THET8 | Q9LCY2 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
           RSMG_THET8     1 MFHGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g8aC00 C:1-249 Vaccinia Virus protein VP39                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh-----------hhhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhh........eeeeeee...hhhhhhhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhh.eeeeeeeeee......eeeeeeeee............hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g8a C   1 MFhGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQE-----------GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
                              |     10        20        30        40    |    -      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
                              3-HIC                                    45          57

Chain D from PDB  Type:PROTEIN  Length:239
 aligned with RSMG_THET8 | Q9LCY2 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
           RSMG_THET8     1 MFHGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g8aD00 D:1-249 Vaccinia Virus protein VP39                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh----------hhhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhh........eeeeeee...hhhhhhhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhhheeeeeeeeee......eeeeeeeee............hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g8a D   1 MFhGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEA----------GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
                              |     10        20        30        40     |   -      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
                              3-HIC                                     46         57

Chain E from PDB  Type:PROTEIN  Length:239
 aligned with RSMG_THET8 | Q9LCY2 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
           RSMG_THET8     1 MFHGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g8aE00 E:1-249 Vaccinia Virus protein VP39                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh----------hhhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhh........eeeeeee...hhhhhhhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhh.eeeeeeeeee......eeeeeeeee............hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g8a E   1 MFhGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEA----------GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
                              |     10        20        30        40     |   -      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
                              3-HIC                                     46         57

Chain F from PDB  Type:PROTEIN  Length:239
 aligned with RSMG_THET8 | Q9LCY2 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
           RSMG_THET8     1 MFHGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3g8aF00 F:1-249 Vaccinia Virus protein VP39                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh----------hhhhhhhhhhhhhhhhhhh.......eeeee......hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh...eeeee.hhhhhh........eeeeeee...hhhhhhhhhh..eeeeeeeeeee...hhhhhhhhhhhhhhh.eeeeeeeeee......eeeeeeeee............hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g8a F   1 MFhGKHPGGLSERGRALLLEGGKALGLDLKPHLEAFSRLYALLQEA----------GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTAPTPPAYPRRPGVPERHPLC 249
                              |     10        20        30        40     |   -      | 60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         
                              3-HIC                                     46         57

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3G8A)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: Vaccinia Virus protein VP39 (378)

Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8. (7)

1a	3g8aA00	A:1-249
1b	3g8aC00	C:1-249
1c	3g8aB00	B:1-249
1d	3g8aD00	D:1-249
1e	3g8aE00	E:1-249
1f	3g8aF00	F:1-249

(no "Pfam Domain" information available for 3G8A)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (RSMG_THET8 | Q9LCY2)

molecular function
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0070043	rRNA (guanine-N7-)-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N7-methylguanine.
	GO:0008649	rRNA methyltransferase activity	Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0070476	rRNA (guanine-N7)-methylation	The addition of a methyl group to the N7 atom in the base portion of a guanine nucleotide residue in an rRNA molecule.
	GO:0031167	rRNA methylation	The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.
	GO:0006364	rRNA processing	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		HIC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SAH	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Phe A:93 - Pro A:94	[ RasMol ]
		Phe B:93 - Pro B:94	[ RasMol ]
		Phe C:93 - Pro C:94	[ RasMol ]
		Phe D:93 - Pro D:94	[ RasMol ]
		Phe E:93 - Pro E:94	[ RasMol ]
		Phe F:93 - Pro F:94	[ RasMol ]
		Tyr A:236 - Pro A:237	[ RasMol ]
		Tyr B:236 - Pro B:237	[ RasMol ]
		Tyr C:236 - Pro C:237	[ RasMol ]
		Tyr D:236 - Pro D:237	[ RasMol ]
		Tyr E:236 - Pro E:237	[ RasMol ]
		Tyr F:236 - Pro F:237	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]
		Biological Unit 6	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format \| Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3g8a
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	RSMG_THET8 \| Q9LCY2
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.1.1.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	RSMG_THET8 \| Q9LCY2
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	RSMG_THET8 \| Q9LCY2	:	3g88 3g89 3g8b

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 12)

Sites (6, 6)

SS Bonds (6, 6)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (1, 6)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File