3FEF - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PUTATIVE GLUCOSIDASE LPLD FROM BACILLUS SUBTILIS

Authors :   U. A. Ramagopal, K. R. Rajashankar, R. Toro, S. K. Burley, S. C. Almo, New Research Center For Structural Genomics (Nysgxrc)

Date :   28 Nov 08 (Deposition) - 30 Dec 08 (Release) - 20 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,C  (1x)
Biol. Unit 3: B,D  (1x)

Keywords :   Lpld, Gulosidase, Structural Genomics, Unknown Function, Glycosidase, Hydrolase, Manganese, Metal-Binding, Nad, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   U. A. Ramagopal, K. R. Rajashankar, R. Toro, S. K. Burley, S. C. Almo
Crystal Structure Of Putative Glucosidase Lpld From Bacillu Subtilis.
To Be Published
PubMed: search

Molecule 1 - PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE
	Chains	:	A, B, C, D
	EC Number	:	3.2.1.67
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BC-PSGX4(BC)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BSU07130, LPLD
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A		C
Biological Unit 3 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 43)

No.	Name	Count	Type	Full Name
1	MG	4	Ligand/Ion	MAGNESIUM ION
2	MSE	32	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 39)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	32	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 19)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 20)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:252 , ARG A:275 , ARG A:302 , HOH A:531 , HOH A:534	BINDING SITE FOR RESIDUE SO4 A 2
02	AC2	SOFTWARE	PRO A:284 , ARG C:429 , SER C:430	BINDING SITE FOR RESIDUE SO4 A 455
03	AC3	SOFTWARE	CYS A:173 , HIS A:210 , HOH A:457 , HOH A:469 , HOH A:758	BINDING SITE FOR RESIDUE MG A 1
04	AC4	SOFTWARE	PHE B:252 , ARG B:275 , ARG B:302 , HOH B:551 , HOH B:556	BINDING SITE FOR RESIDUE SO4 B 1
05	AC5	SOFTWARE	ARG B:429 , SER B:430 , PRO D:284	BINDING SITE FOR RESIDUE SO4 B 455
06	AC6	SOFTWARE	CYS B:173 , HIS B:210 , HOH B:765 , HOH B:766 , HOH B:767	BINDING SITE FOR RESIDUE MG B 456
07	AC7	SOFTWARE	PHE C:252 , ARG C:275 , ARG C:302	BINDING SITE FOR RESIDUE SO4 C 3
08	AC8	SOFTWARE	CYS C:173 , HIS C:210 , HOH C:455	BINDING SITE FOR RESIDUE MG C 1
09	AC9	SOFTWARE	PHE D:252 , ARG D:275 , ARG D:302	BINDING SITE FOR RESIDUE SO4 D 4
10	BC1	SOFTWARE	PRO B:284 , ARG D:429 , SER D:430	BINDING SITE FOR RESIDUE SO4 D 455
11	BC2	SOFTWARE	CYS D:173 , HIS D:210 , HOH D:760 , HOH D:761	BINDING SITE FOR RESIDUE MG D 1

(no "SS Bond" information available for 3FEF)

Asymmetric Unit

No.	Residues
1	Asn A:151	-	Pro A:152
2	Asn B:151	-	Pro B:152
3	Asn C:151	-	Pro C:152
4	Asn D:151	-	Pro D:152

(no "SAP(SNP)/Variant" information available for 3FEF)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F4	PS01324	Glycosyl hydrolases family 4 signature.	LPLD_BACSU	142-173	4	A:142-173 B:142-173 C:142-173 D:142-173

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F4	PS01324	Glycosyl hydrolases family 4 signature.	LPLD_BACSU	142-173	4	A:142-173 B:142-173 C:142-173 D:142-173

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F4	PS01324	Glycosyl hydrolases family 4 signature.	LPLD_BACSU	142-173	2	A:142-173 - C:142-173 -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLYCOSYL_HYDROL_F4	PS01324	Glycosyl hydrolases family 4 signature.	LPLD_BACSU	142-173	2	- B:142-173 - D:142-173

(no "Exon" information available for 3FEF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:434
 aligned with LPLD_BACSU | P39130 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:434
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436    
           LPLD_BACSU     7 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEMLAARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDML 440
               SCOP domains d3fefa1 A:7-171 automated matches                                                                                                                                    d3fefa2 A:172-440 automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhh......eeeee..hhhhhhh...eeee.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhh....hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhhhhh...................hhhhhhhhhhhh.ee..hhhhhh.....hhhhh.........hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh....eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fef A   7 LDQIKIAYIGGGSQGWARSLmSDLSIDERmSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDmEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPmSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEmVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNmPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEmLAARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDmL 440
                                    16        26|       36        46        56        66        76        86        96       106       116       126       136       146      |156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346    |  356       366       376       386    |  396       406       416       426       436  | 
                                               27-MSE   36-MSE                                                     95-MSE                                                   153-MSE                          186-MSE                                                                                                                                                              351-MSE                                 391-MSE                                         439-MSE

Chain B from PDB  Type:PROTEIN  Length:434
 aligned with LPLD_BACSU | P39130 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:434
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436    
           LPLD_BACSU     7 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEMLAARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDML 440
               SCOP domains d3fefb1 B:7-171 automated matches                                                                                                                                    d3fefb2 B:172-440 automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhh......eeeee..hhhhhhh...eeee.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhh....hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhhhhh.........hhhhh.....hhhhhhhhhhhh.ee..hhhhhh.....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh....eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fef B   7 LDQIKIAYIGGGSQGWARSLmSDLSIDERmSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDmEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPmSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEmVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNmPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEmLAARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDmL 440
                                    16        26|       36        46        56        66        76        86        96       106       116       126       136       146      |156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346    |  356       366       376       386    |  396       406       416       426       436  | 
                                               27-MSE   36-MSE                                                     95-MSE                                                   153-MSE                          186-MSE                                                                                                                                                              351-MSE                                 391-MSE                                         439-MSE

Chain C from PDB  Type:PROTEIN  Length:434
 aligned with LPLD_BACSU | P39130 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:434
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436    
           LPLD_BACSU     7 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEMLAARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDML 440
               SCOP domains d3fefc1 C:7-171 automated matches                                                                                                                                    d3fefc2 C:172-440 automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhh......eeeeee.hhhhhhh...eeee.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhh....hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhhhhh.........hhhhh.....hhhhhhhhhhhh.ee..hhhhhh...................hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh...eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fef C   7 LDQIKIAYIGGGSQGWARSLmSDLSIDERmSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDmEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPmSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEmVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNmPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEmLAARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDmL 440
                                    16        26|       36        46        56        66        76        86        96       106       116       126       136       146      |156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346    |  356       366       376       386    |  396       406       416       426       436  | 
                                               27-MSE   36-MSE                                                     95-MSE                                                   153-MSE                          186-MSE                                                                                                                                                              351-MSE                                 391-MSE                                         439-MSE

Chain D from PDB  Type:PROTEIN  Length:434
 aligned with LPLD_BACSU | P39130 from UniProtKB/Swiss-Prot  Length:446

    Alignment length:434
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436    
           LPLD_BACSU     7 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEMLAARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDML 440
               SCOP domains d3fefd1 D:7-171 automated matches                                                                                                                                    d3fefd2 D:172-440 automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.....hhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhh......eeeee..hhhhhhh...eeee.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhh....hhh.eeeeeeee..eeeeeeeee..eehhhhhhhhhhhhh.........hhhhh.....hhhhhhhhhhhh.ee..hhhhhhhhh......hhhhhh....hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhh....eeeeeeee............eeeeeeeee..eeee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------GLYCOSYL_HYDROL_F4              --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fef D   7 LDQIKIAYIGGGSQGWARSLmSDLSIDERmSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDmEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPmSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAEmVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLIVQQRGVAEKASGEEGVNIIAALLGLGELVTNVNmPNQGQVLNLPIQAIVETNAFITRNRVQPILSGALPKGVEmLAARHISNQEAVADAGLTKDTGLAFQAFLNDPLVQIDRSDAEQLFNDmL 440
                                    16        26|       36        46        56        66        76        86        96       106       116       126       136       146      |156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346    |  356       366       376       386    |  396       406       416       426       436  | 
                                               27-MSE   36-MSE                                                     95-MSE                                                   153-MSE                          186-MSE                                                                                                                                                              351-MSE                                 391-MSE                                         439-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: LDH C-terminal domain-like (172)

Superfamily: LDH C-terminal domain-like (172)

Family: AglA-like glucosidase (9)

Protein domain: automated matches (2)

Bacillus subtilis [TaxId: 1423] (1)

1a	d3fefa2	A:172-440
1b	d3fefb2	B:172-440
1c	d3fefc2	C:172-440
1d	d3fefd2	D:172-440

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Bacillus subtilis [TaxId: 1423] (11)

2a	d3fefa1	A:7-171
2b	d3fefc1	C:7-171
2c	d3fefd1	D:7-171
2d	d3fefb1	B:7-171

(no "CATH Domain" information available for 3FEF)

(no "Pfam Domain" information available for 3FEF)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (LPLD_BACSU | P39130)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0047911	galacturan 1,4-alpha-galacturonidase activity	Catalysis of the reaction: [(1->4)-alpha-D-galacturonide](n) + H2O = [(1->4)-alpha-D-galacturonide](n-1) + D-galacturonate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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		BC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asn A:151 - Pro A:152	[ RasMol ]
		Asn B:151 - Pro B:152	[ RasMol ]
		Asn C:151 - Pro C:152	[ RasMol ]
		Asn D:151 - Pro D:152	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	3fef
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	3.2.1.67
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(no "Entries Sharing at Least One Protein Chain" available for 3FEF)

(no "Related Entries Specified in the PDB File" available for 3FEF)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 43)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File