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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PUTATIVE GLUCOSIDASE LPLD FROM BACILLUS
Keywords LPLD, GULOSIDASE, STRUCTURAL GENOMICS, UNKNOWN FUNCTION, GLY HYDROLASE, MANGANESE, METAL-BINDING, NAD, PSI-2, PROTEIN ST INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GEN NYSGXRC
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3FEF     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE  A 434 3315 64
2  Protein   PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE  B 434 3319 64
3  Protein   PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE  C 434 3322 64
4  Protein   PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE  D 434 3322 64
5  Ligand   PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE  A 3 0 11
6  Ligand   PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE  B 3 0 11
7  Ligand   PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE  C 2 0 6
8  Ligand   PUTATIVE GLUCOSIDASE LPLD, ALPHA-GALACTURONIDASE  D 3 0 11
9 Water     535 0 535
total       2282 13278 830
Proteins
Unit 1 LEU7 ASP8 GLN9 ILE10 LYS11 ILE12 ALA13 TYR14 ILE15 GLY16 GLY17 GLY18 SER19 GLN20 GLY21 TRP22 ALA23 ARG24 SER25 LEU26 MSE27 SER28 ASP29 LEU30 SER31 ILE32 ASP33 GLU34 ARG35 MSE36 SER37 GLY38 THR39 VAL40 ALA41 LEU42 TYR43 ASP44 LEU45 ASP46 PHE47 GLU48 ALA49 ALA50 GLN51 LYS52 ASN53 GLU54 VAL55 ILE56 GLY57 ASN58 HIS59 SER60 GLY61 ASN62 GLY63 ARG64 TRP65 ARG66 TYR67 GLU68 ALA69 VAL70 SER71 THR72 LEU73 LYS74 LYS75 ALA76 LEU77 SER78 ALA79 ALA80 ASP81 ILE82 VAL83 ILE84 ILE85 SER86 ILE87 LEU88 PRO89 GLY90 SER91 LEU92 ASP93 ASP94 MSE95 GLU96 VAL97 ASP98 VAL99 HIS100 LEU101 PRO102 GLU103 ARG104 CYS105 GLY106 ILE107 TYR108 GLN109 SER110 VAL111 GLY112 ASP113 THR114 VAL115 GLY116 PRO117 GLY118 GLY119 ILE120 ILE121 ARG122 GLY123 LEU124 ARG125 ALA126 VAL127 PRO128 ILE129 PHE130 ALA131 GLU132 ILE133 ALA134 ARG135 ALA136 ILE137 ARG138 ASP139 TYR140 ALA141 PRO142 GLU143 SER144 TRP145 VAL146 ILE147 ASN148 TYR149 THR150 ASN151 PRO152 MSE153 SER154 VAL155 CYS156 THR157 ARG158 VAL159 LEU160 TYR161 LYS162 VAL163 PHE164 PRO165 GLY166 ILE167 LYS168 ALA169 ILE170 GLY171 CYS172 CYS173 HIS174 GLU175 VAL176 PHE177 GLY178 THR179 GLN180 LYS181 LEU182 LEU183 ALA184 GLU185 MSE186 VAL187 THR188 GLU189 ARG190 LEU191 GLY192 ILE193 GLU194 VAL195 PRO196 ARG197 ARG198 GLU199 ASP200 ILE201 ARG202 VAL203 ASN204 VAL205 LEU206 GLY207 ILE208 ASN209 HIS210 PHE211 THR212 TRP213 ILE214 THR215 LYS216 ALA217 SER218 TYR219 ARG220 HIS221 ILE222 ASP223 LEU224 LEU225 PRO226 ILE227 PHE228 ARG229 GLU230 PHE231 SER232 ALA233 HIS234 TYR235 GLY236 GLU237 SER238 GLY239 TYR240 GLU241 LEU242 GLU243 GLY244 GLU245 CYS246 TRP247 ARG248 ASP249 SER250 VAL251 PHE252 CYS253 SER254 ALA255 HIS256 ARG257 VAL258 ALA259 PHE260 ASP261 LEU262 PHE263 GLU264 THR265 TYR266 GLY267 ALA268 ILE269 PRO270 ALA271 ALA272 GLY273 ASP274 ARG275 HIS276 LEU277 ALA278 GLU279 PHE280 LEU281 PRO282 GLY283 PRO284 TYR285 LEU286 LYS287 GLN288 PRO289 GLU290 VAL291 TRP292 LYS293 PHE294 HIS295 LEU296 THR297 PRO298 ILE299 SER300 PHE301 ARG302 LYS303 GLN304 ASP305 ARG306 ALA307 GLU308 LYS309 ARG310 GLN311 GLU312 THR313 GLU314 ARG315 LEU316 ILE317 VAL318 GLN319 GLN320 ARG321 GLY322 VAL323 ALA324 GLU325 LYS326 ALA327 SER328 GLY329 GLU330 GLU331 GLY332 VAL333 ASN334 ILE335 ILE336 ALA337 ALA338 LEU339 LEU340 GLY341 LEU342 GLY343 GLU344 LEU345 VAL346 THR347 ASN348 VAL349 ASN350 MSE351 PRO352 ASN353 GLN354 GLY355 GLN356 VAL357 LEU358 ASN359 LEU360 PRO361 ILE362 GLN363 ALA364 ILE365 VAL366 GLU367 THR368 ASN369 ALA370 PHE371 ILE372 THR373 ARG374 ASN375 ARG376 VAL377 GLN378 PRO379 ILE380 LEU381 SER382 GLY383 ALA384 LEU385 PRO386 LYS387 GLY388 VAL389 GLU390 MSE391 LEU392 ALA393 ALA394 ARG395 HIS396 ILE397 SER398 ASN399 GLN400 GLU401 ALA402 VAL403 ALA404 ASP405 ALA406 GLY407 LEU408 THR409 LYS410 ASP411 THR412 GLY413 LEU414 ALA415 PHE416 GLN417 ALA418 PHE419 LEU420 ASN421 ASP422 PRO423 LEU424 VAL425 GLN426 ILE427 ASP428 ARG429 SER430 ASP431 ALA432 GLU433 GLN434 LEU435 PHE436 ASN437 ASP438 MSE439 LEU440
Unit 2 LEU7 ASP8 GLN9 ILE10 LYS11 ILE12 ALA13 TYR14 ILE15 GLY16 GLY17 GLY18 SER19 GLN20 GLY21 TRP22 ALA23 ARG24 SER25 LEU26 MSE27 SER28 ASP29 LEU30 SER31 ILE32 ASP33 GLU34 ARG35 MSE36 SER37 GLY38 THR39 VAL40 ALA41 LEU42 TYR43 ASP44 LEU45 ASP46 PHE47 GLU48 ALA49 ALA50 GLN51 LYS52 ASN53 GLU54 VAL55 ILE56 GLY57 ASN58 HIS59 SER60 GLY61 ASN62 GLY63 ARG64 TRP65 ARG66 TYR67 GLU68 ALA69 VAL70 SER71 THR72 LEU73 LYS74 LYS75 ALA76 LEU77 SER78 ALA79 ALA80 ASP81 ILE82 VAL83 ILE84 ILE85 SER86 ILE87 LEU88 PRO89 GLY90 SER91 LEU92 ASP93 ASP94 MSE95 GLU96 VAL97 ASP98 VAL99 HIS100 LEU101 PRO102 GLU103 ARG104 CYS105 GLY106 ILE107 TYR108 GLN109 SER110 VAL111 GLY112 ASP113 THR114 VAL115 GLY116 PRO117 GLY118 GLY119 ILE120 ILE121 ARG122 GLY123 LEU124 ARG125 ALA126 VAL127 PRO128 ILE129 PHE130 ALA131 GLU132 ILE133 ALA134 ARG135 ALA136 ILE137 ARG138 ASP139 TYR140 ALA141 PRO142 GLU143 SER144 TRP145 VAL146 ILE147 ASN148 TYR149 THR150 ASN151 PRO152 MSE153 SER154 VAL155 CYS156 THR157 ARG158 VAL159 LEU160 TYR161 LYS162 VAL163 PHE164 PRO165 GLY166 ILE167 LYS168 ALA169 ILE170 GLY171 CYS172 CYS173 HIS174 GLU175 VAL176 PHE177 GLY178 THR179 GLN180 LYS181 LEU182 LEU183 ALA184 GLU185 MSE186 VAL187 THR188 GLU189 ARG190 LEU191 GLY192 ILE193 GLU194 VAL195 PRO196 ARG197 ARG198 GLU199 ASP200 ILE201 ARG202 VAL203 ASN204 VAL205 LEU206 GLY207 ILE208 ASN209 HIS210 PHE211 THR212 TRP213 ILE214 THR215 LYS216 ALA217 SER218 TYR219 ARG220 HIS221 ILE222 ASP223 LEU224 LEU225 PRO226 ILE227 PHE228 ARG229 GLU230 PHE231 SER232 ALA233 HIS234 TYR235 GLY236 GLU237 SER238 GLY239 TYR240 GLU241 LEU242 GLU243 GLY244 GLU245 CYS246 TRP247 ARG248 ASP249 SER250 VAL251 PHE252 CYS253 SER254 ALA255 HIS256 ARG257 VAL258 ALA259 PHE260 ASP261 LEU262 PHE263 GLU264 THR265 TYR266 GLY267 ALA268 ILE269 PRO270 ALA271 ALA272 GLY273 ASP274 ARG275 HIS276 LEU277 ALA278 GLU279 PHE280 LEU281 PRO282 GLY283 PRO284 TYR285 LEU286 LYS287 GLN288 PRO289 GLU290 VAL291 TRP292 LYS293 PHE294 HIS295 LEU296 THR297 PRO298 ILE299 SER300 PHE301 ARG302 LYS303 GLN304 ASP305 ARG306 ALA307 GLU308 LYS309 ARG310 GLN311 GLU312 THR313 GLU314 ARG315 LEU316 ILE317 VAL318 GLN319 GLN320 ARG321 GLY322 VAL323 ALA324 GLU325 LYS326 ALA327 SER328 GLY329 GLU330 GLU331 GLY332 VAL333 ASN334 ILE335 ILE336 ALA337 ALA338 LEU339 LEU340 GLY341 LEU342 GLY343 GLU344 LEU345 VAL346 THR347 ASN348 VAL349 ASN350 MSE351 PRO352 ASN353 GLN354 GLY355 GLN356 VAL357 LEU358 ASN359 LEU360 PRO361 ILE362 GLN363 ALA364 ILE365 VAL366 GLU367 THR368 ASN369 ALA370 PHE371 ILE372 THR373 ARG374 ASN375 ARG376 VAL377 GLN378 PRO379 ILE380 LEU381 SER382 GLY383 ALA384 LEU385 PRO386 LYS387 GLY388 VAL389 GLU390 MSE391 LEU392 ALA393 ALA394 ARG395 HIS396 ILE397 SER398 ASN399 GLN400 GLU401 ALA402 VAL403 ALA404 ASP405 ALA406 GLY407 LEU408 THR409 LYS410 ASP411 THR412 GLY413 LEU414 ALA415 PHE416 GLN417 ALA418 PHE419 LEU420 ASN421 ASP422 PRO423 LEU424 VAL425 GLN426 ILE427 ASP428 ARG429 SER430 ASP431 ALA432 GLU433 GLN434 LEU435 PHE436 ASN437 ASP438 MSE439 LEU440
Unit 3 LEU7 ASP8 GLN9 ILE10 LYS11 ILE12 ALA13 TYR14 ILE15 GLY16 GLY17 GLY18 SER19 GLN20 GLY21 TRP22 ALA23 ARG24 SER25 LEU26 MSE27 SER28 ASP29 LEU30 SER31 ILE32 ASP33 GLU34 ARG35 MSE36 SER37 GLY38 THR39 VAL40 ALA41 LEU42 TYR43 ASP44 LEU45 ASP46 PHE47 GLU48 ALA49 ALA50 GLN51 LYS52 ASN53 GLU54 VAL55 ILE56 GLY57 ASN58 HIS59 SER60 GLY61 ASN62 GLY63 ARG64 TRP65 ARG66 TYR67 GLU68 ALA69 VAL70 SER71 THR72 LEU73 LYS74 LYS75 ALA76 LEU77 SER78 ALA79 ALA80 ASP81 ILE82 VAL83 ILE84 ILE85 SER86 ILE87 LEU88 PRO89 GLY90 SER91 LEU92 ASP93 ASP94 MSE95 GLU96 VAL97 ASP98 VAL99 HIS100 LEU101 PRO102 GLU103 ARG104 CYS105 GLY106 ILE107 TYR108 GLN109 SER110 VAL111 GLY112 ASP113 THR114 VAL115 GLY116 PRO117 GLY118 GLY119 ILE120 ILE121 ARG122 GLY123 LEU124 ARG125 ALA126 VAL127 PRO128 ILE129 PHE130 ALA131 GLU132 ILE133 ALA134 ARG135 ALA136 ILE137 ARG138 ASP139 TYR140 ALA141 PRO142 GLU143 SER144 TRP145 VAL146 ILE147 ASN148 TYR149 THR150 ASN151 PRO152 MSE153 SER154 VAL155 CYS156 THR157 ARG158 VAL159 LEU160 TYR161 LYS162 VAL163 PHE164 PRO165 GLY166 ILE167 LYS168 ALA169 ILE170 GLY171 CYS172 CYS173 HIS174 GLU175 VAL176 PHE177 GLY178 THR179 GLN180 LYS181 LEU182 LEU183 ALA184 GLU185 MSE186 VAL187 THR188 GLU189 ARG190 LEU191 GLY192 ILE193 GLU194 VAL195 PRO196 ARG197 ARG198 GLU199 ASP200 ILE201 ARG202 VAL203 ASN204 VAL205 LEU206 GLY207 ILE208 ASN209 HIS210 PHE211 THR212 TRP213 ILE214 THR215 LYS216 ALA217 SER218 TYR219 ARG220 HIS221 ILE222 ASP223 LEU224 LEU225 PRO226 ILE227 PHE228 ARG229 GLU230 PHE231 SER232 ALA233 HIS234 TYR235 GLY236 GLU237 SER238 GLY239 TYR240 GLU241 LEU242 GLU243 GLY244 GLU245 CYS246 TRP247 ARG248 ASP249 SER250 VAL251 PHE252 CYS253 SER254 ALA255 HIS256 ARG257 VAL258 ALA259 PHE260 ASP261 LEU262 PHE263 GLU264 THR265 TYR266 GLY267 ALA268 ILE269 PRO270 ALA271 ALA272 GLY273 ASP274 ARG275 HIS276 LEU277 ALA278 GLU279 PHE280 LEU281 PRO282 GLY283 PRO284 TYR285 LEU286 LYS287 GLN288 PRO289 GLU290 VAL291 TRP292 LYS293 PHE294 HIS295 LEU296 THR297 PRO298 ILE299 SER300 PHE301 ARG302 LYS303 GLN304 ASP305 ARG306 ALA307 GLU308 LYS309 ARG310 GLN311 GLU312 THR313 GLU314 ARG315 LEU316 ILE317 VAL318 GLN319 GLN320 ARG321 GLY322 VAL323 ALA324 GLU325 LYS326 ALA327 SER328 GLY329 GLU330 GLU331 GLY332 VAL333 ASN334 ILE335 ILE336 ALA337 ALA338 LEU339 LEU340 GLY341 LEU342 GLY343 GLU344 LEU345 VAL346 THR347 ASN348 VAL349 ASN350 MSE351 PRO352 ASN353 GLN354 GLY355 GLN356 VAL357 LEU358 ASN359 LEU360 PRO361 ILE362 GLN363 ALA364 ILE365 VAL366 GLU367 THR368 ASN369 ALA370 PHE371 ILE372 THR373 ARG374 ASN375 ARG376 VAL377 GLN378 PRO379 ILE380 LEU381 SER382 GLY383 ALA384 LEU385 PRO386 LYS387 GLY388 VAL389 GLU390 MSE391 LEU392 ALA393 ALA394 ARG395 HIS396 ILE397 SER398 ASN399 GLN400 GLU401 ALA402 VAL403 ALA404 ASP405 ALA406 GLY407 LEU408 THR409 LYS410 ASP411 THR412 GLY413 LEU414 ALA415 PHE416 GLN417 ALA418 PHE419 LEU420 ASN421 ASP422 PRO423 LEU424 VAL425 GLN426 ILE427 ASP428 ARG429 SER430 ASP431 ALA432 GLU433 GLN434 LEU435 PHE436 ASN437 ASP438 MSE439 LEU440
Unit 4 LEU7 ASP8 GLN9 ILE10 LYS11 ILE12 ALA13 TYR14 ILE15 GLY16 GLY17 GLY18 SER19 GLN20 GLY21 TRP22 ALA23 ARG24 SER25 LEU26 MSE27 SER28 ASP29 LEU30 SER31 ILE32 ASP33 GLU34 ARG35 MSE36 SER37 GLY38 THR39 VAL40 ALA41 LEU42 TYR43 ASP44 LEU45 ASP46 PHE47 GLU48 ALA49 ALA50 GLN51 LYS52 ASN53 GLU54 VAL55 ILE56 GLY57 ASN58 HIS59 SER60 GLY61 ASN62 GLY63 ARG64 TRP65 ARG66 TYR67 GLU68 ALA69 VAL70 SER71 THR72 LEU73 LYS74 LYS75 ALA76 LEU77 SER78 ALA79 ALA80 ASP81 ILE82 VAL83 ILE84 ILE85 SER86 ILE87 LEU88 PRO89 GLY90 SER91 LEU92 ASP93 ASP94 MSE95 GLU96 VAL97 ASP98 VAL99 HIS100 LEU101 PRO102 GLU103 ARG104 CYS105 GLY106 ILE107 TYR108 GLN109 SER110 VAL111 GLY112 ASP113 THR114 VAL115 GLY116 PRO117 GLY118 GLY119 ILE120 ILE121 ARG122 GLY123 LEU124 ARG125 ALA126 VAL127 PRO128 ILE129 PHE130 ALA131 GLU132 ILE133 ALA134 ARG135 ALA136 ILE137 ARG138 ASP139 TYR140 ALA141 PRO142 GLU143 SER144 TRP145 VAL146 ILE147 ASN148 TYR149 THR150 ASN151 PRO152 MSE153 SER154 VAL155 CYS156 THR157 ARG158 VAL159 LEU160 TYR161 LYS162 VAL163 PHE164 PRO165 GLY166 ILE167 LYS168 ALA169 ILE170 GLY171 CYS172 CYS173 HIS174 GLU175 VAL176 PHE177 GLY178 THR179 GLN180 LYS181 LEU182 LEU183 ALA184 GLU185 MSE186 VAL187 THR188 GLU189 ARG190 LEU191 GLY192 ILE193 GLU194 VAL195 PRO196 ARG197 ARG198 GLU199 ASP200 ILE201 ARG202 VAL203 ASN204 VAL205 LEU206 GLY207 ILE208 ASN209 HIS210 PHE211 THR212 TRP213 ILE214 THR215 LYS216 ALA217 SER218 TYR219 ARG220 HIS221 ILE222 ASP223 LEU224 LEU225 PRO226 ILE227 PHE228 ARG229 GLU230 PHE231 SER232 ALA233 HIS234 TYR235 GLY236 GLU237 SER238 GLY239 TYR240 GLU241 LEU242 GLU243 GLY244 GLU245 CYS246 TRP247 ARG248 ASP249 SER250 VAL251 PHE252 CYS253 SER254 ALA255 HIS256 ARG257 VAL258 ALA259 PHE260 ASP261 LEU262 PHE263 GLU264 THR265 TYR266 GLY267 ALA268 ILE269 PRO270 ALA271 ALA272 GLY273 ASP274 ARG275 HIS276 LEU277 ALA278 GLU279 PHE280 LEU281 PRO282 GLY283 PRO284 TYR285 LEU286 LYS287 GLN288 PRO289 GLU290 VAL291 TRP292 LYS293 PHE294 HIS295 LEU296 THR297 PRO298 ILE299 SER300 PHE301 ARG302 LYS303 GLN304 ASP305 ARG306 ALA307 GLU308 LYS309 ARG310 GLN311 GLU312 THR313 GLU314 ARG315 LEU316 ILE317 VAL318 GLN319 GLN320 ARG321 GLY322 VAL323 ALA324 GLU325 LYS326 ALA327 SER328 GLY329 GLU330 GLU331 GLY332 VAL333 ASN334 ILE335 ILE336 ALA337 ALA338 LEU339 LEU340 GLY341 LEU342 GLY343 GLU344 LEU345 VAL346 THR347 ASN348 VAL349 ASN350 MSE351 PRO352 ASN353 GLN354 GLY355 GLN356 VAL357 LEU358 ASN359 LEU360 PRO361 ILE362 GLN363 ALA364 ILE365 VAL366 GLU367 THR368 ASN369 ALA370 PHE371 ILE372 THR373 ARG374 ASN375 ARG376 VAL377 GLN378 PRO379 ILE380 LEU381 SER382 GLY383 ALA384 LEU385 PRO386 LYS387 GLY388 VAL389 GLU390 MSE391 LEU392 ALA393 ALA394 ARG395 HIS396 ILE397 SER398 ASN399 GLN400 GLU401 ALA402 VAL403 ALA404 ASP405 ALA406 GLY407 LEU408 THR409 LYS410 ASP411 THR412 GLY413 LEU414 ALA415 PHE416 GLN417 ALA418 PHE419 LEU420 ASN421 ASP422 PRO423 LEU424 VAL425 GLN426 ILE427 ASP428 ARG429 SER430 ASP431 ALA432 GLU433 GLN434 LEU435 PHE436 ASN437 ASP438 MSE439 LEU440
Ligands
Unit 5 MG1 SO42 SO4455
Unit 6 SO41 SO4455 MG456
Unit 7 MG1 SO43
Unit 8 MG1 SO44 SO4455
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany