3FAV - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF THE CFP10-ESAT6 COMPLEX FROM MYCOBACTERIUM TUBERCULOSIS

Authors :   C. Poulsen, S. J. Holton, M. Wilmanns, Y. H. Song

Date :   18 Nov 08 (Deposition) - 24 Nov 09 (Release) - 13 Aug 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Complex, Operon Structure, Four-Helical-Bundle, Coiled-Coil, Wxg- Motif, Mycobacterium Tuberculosis, Secreted, Secretion System, Adaptor Protein, Proposed Virulent Factor, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Poulsen, S. Panjikar, S. J. Holton, M. Wilmanns, Y. H. Song
Wxg100 Protein Superfamily Consists Of Three Subfamilies An Exhibits An Alpha-Helical C-Terminal Conserved Residue Pattern.
Plos One V. 9 89313 2014
PubMed-ID: 24586681 | Reference-DOI: 10.1371/JOURNAL.PONE.0089313

Molecule 1 - ESAT-6-LIKE PROTEIN ESXB
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	MYCOBACTERIUM SMEGMATIS
	Expression System Plasmid	:	PMYNT
	Expression System Strain	:	MC2 155
	Expression System Taxid	:	246196
	Expression System Vector Type	:	VECTOR
	Gene	:	ESXB
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	CFP-10, 10 KDA CULTURE FILTRATE ANTIGEN CFP10, SECRETED ANTIGENIC PROTEIN MTSA-10

Molecule 2 - 6 KDA EARLY SECRETORY ANTIGENIC TARGET
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	MYCOBACTERIUM SMEGMATIS
	Expression System Plasmid	:	PMYNT
	Expression System Strain	:	MC2 155
	Expression System Taxid	:	246196
	Expression System Vector Type	:	VECTOR
	Gene	:	ESXA
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	ESAT-6

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	IMD	1	Ligand/Ion	IMIDAZOLE
2	ZN	7	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	IMD	1	Ligand/Ion	IMIDAZOLE
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	IMD	-1	Ligand/Ion	IMIDAZOLE
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:14 , ASN A:17 , HOH A:167 , LYS B:38 , HOH B:132	BINDING SITE FOR RESIDUE ZN A 101
2	AC2	SOFTWARE	ASP A:24 , HOH A:303	BINDING SITE FOR RESIDUE ZN A 102
3	AC3	SOFTWARE	HIS B:26 , ASP B:30 , HOH B:308	BINDING SITE FOR RESIDUE ZN B 1
4	AC4	SOFTWARE	GLU B:31 , IMD B:97	BINDING SITE FOR RESIDUE ZN B 96
5	AC5	SOFTWARE	ARG A:20 , HOH A:302 , LEU B:28 , GLU B:31 , ZN B:96	BINDING SITE FOR RESIDUE IMD B 97
6	AC6	SOFTWARE	GLU B:49 , GLU C:3 , ASP C:7 , HOH C:306	BINDING SITE FOR RESIDUE ZN C 101
7	AC7	SOFTWARE	ASP C:30 , HOH C:197 , HOH C:288 , ASP D:30	BINDING SITE FOR RESIDUE ZN C 102
8	AC8	SOFTWARE	GLU C:33 , HOH C:201 , HIS D:26	BINDING SITE FOR RESIDUE ZN D 96

(no "SS Bond" information available for 3FAV)

(no "Cis Peptide Bond" information available for 3FAV)

(no "SAP(SNP)/Variant" information available for 3FAV)

(no "PROSITE Motif" information available for 3FAV)

(no "Exon" information available for 3FAV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:74
 aligned with ESXB_MYCTO | P9WNK4 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    20        30        40        50        60        70        80    
            ESXB_MYCTO   11 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYS 84
               SCOP domains d3fava_ A: automated matches                                               SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  3fav A 11 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYS 84
                                    20        30        40        50        60        70        80

Chain A from PDB  Type:PROTEIN  Length:74
 aligned with ESXB_MYCTU | P9WNK5 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:74
                                    20        30        40        50        60        70        80    
            ESXB_MYCTU   11 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYS 84
               SCOP domains d3fava_ A: automated matches                                               SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                  3fav A 11 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYS 84
                                    20        30        40        50        60        70        80

Chain B from PDB  Type:PROTEIN  Length:72
 aligned with ESXA_MYCTO | P9WNK6 from UniProtKB/Swiss-Prot  Length:95

    Alignment length:72
                                    19        29        39        49        59        69        79  
            ESXA_MYCTO   10 GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ 81
               SCOP domains d3favb_ B: ESAT-6, EsxA                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  3fav B 10 GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ 81
                                    19        29        39        49        59        69        79

Chain B from PDB  Type:PROTEIN  Length:72
 aligned with ESXA_MYCTU | P9WNK7 from UniProtKB/Swiss-Prot  Length:95

    Alignment length:72
                                    19        29        39        49        59        69        79  
            ESXA_MYCTU   10 GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ 81
               SCOP domains d3favb_ B: ESAT-6, EsxA                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  3fav B 10 GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQ 81
                                    19        29        39        49        59        69        79

Chain C from PDB  Type:PROTEIN  Length:90
 aligned with ESXB_MYCTO | P9WNK4 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            ESXB_MYCTO    1 MAEMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADEEQ 90
               SCOP domains d3favc_ C: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3fav C  1 MAEMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADEEQ 90
                                    10        20        30        40        50        60        70        80        90

Chain C from PDB  Type:PROTEIN  Length:90
 aligned with ESXB_MYCTU | P9WNK5 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            ESXB_MYCTU    1 MAEMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADEEQ 90
               SCOP domains d3favc_ C: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  3fav C  1 MAEMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRADEEQ 90
                                    10        20        30        40        50        60        70        80        90

Chain D from PDB  Type:PROTEIN  Length:78
 aligned with ESXA_MYCTO | P9WNK6 from UniProtKB/Swiss-Prot  Length:95

    Alignment length:78
                                    16        26        36        46        56        66        76        
            ESXA_MYCTO    7 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMA 84
               SCOP domains d3favd_ D: ESAT-6, EsxA                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  3fav D  7 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMA 84
                                    16        26        36        46        56        66        76

Chain D from PDB  Type:PROTEIN  Length:78
 aligned with ESXA_MYCTU | P9WNK7 from UniProtKB/Swiss-Prot  Length:95

    Alignment length:78
                                    16        26        36        46        56        66        76        
            ESXA_MYCTU    7 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMA 84
               SCOP domains d3favd_ D: ESAT-6, EsxA                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  3fav D  7 NFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMA 84
                                    16        26        36        46        56        66        76

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: EsxAB dimer-like (17)

Family: ESAT-6 like (4)

Protein domain: automated matches (1)

Mycobacterium tuberculosis [TaxId: 83332] (1)

1a	d3fava_	A:
1b	d3favc_	C:

Protein domain: ESAT-6, EsxA (2)

Mycobacterium tuberculosis [TaxId: 1773] (2)

2a	d3favb_	B:
2b	d3favd_	D:

(no "CATH Domain" information available for 3FAV)

(no "Pfam Domain" information available for 3FAV)

Asymmetric Unit(hide GO term definitions)

Chain A,C (ESXB_MYCTU | P9WNK5)

molecular function
	GO:0046812	host cell surface binding	Interacting selectively and non-covalently with the surface of a host cell.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0044315	protein secretion by the type VII secretion system	The process in which proteins are transferred into the extracellular milieu or directly into host cells, via the type VII protein secretion system.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,C (ESXB_MYCTO | P9WNK4)

cellular component
	GO:0005576		extracellular region		The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain B,D (ESXA_MYCTU | P9WNK7)

molecular function
	GO:0046812	host cell surface binding	Interacting selectively and non-covalently with the surface of a host cell.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0052027	modulation by symbiont of host signal transduction pathway	Any process in which an organism modulates the frequency, rate or extent of the host signal transduction pathways, the cascade of processes by which a signal interacts with a receptor. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0052083	negative regulation by symbiont of host cell-mediated immune response	Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of the cell mediated immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
	GO:0044315	protein secretion by the type VII secretion system	The process in which proteins are transferred into the extracellular milieu or directly into host cells, via the type VII protein secretion system.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,D (ESXA_MYCTO | P9WNK6)

cellular component
	GO:0005576		extracellular region		The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3fav)

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	3fav
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	ESXA_MYCTO \| P9WNK6
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	ESXA_MYCTU \| P9WNK7
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	ESXB_MYCTO \| P9WNK4
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		Protein-protein Interaction	:	DIP
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	ESXB_MYCTU \| P9WNK5
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UniProtKB/Swiss-Prot
	ESXA_MYCTO \| P9WNK6	:	1wa8
	ESXA_MYCTU \| P9WNK7	:	1wa8
	ESXB_MYCTO \| P9WNK4	:	1wa8
	ESXB_MYCTU \| P9WNK5	:	1wa8

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

Sequences/Alignments

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SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 20)

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