3F4F - JenaLib

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:69 , HOH A:169 , HOH A:174 , HOH A:193 , HOH A:268 , ILE B:65 , ALA B:81 , GLY B:82 , VAL B:83 , ASP B:85 , TYR B:88 , VAL B:92 , LYS B:93 , HOH B:279 , HOH B:308 , ARG C:137 , GLY C:141 , PHE C:142 , GLY C:143	BINDING SITE FOR RESIDUE UMP B 200
2	AC2	SOFTWARE	ARG A:137 , GLY A:141 , PHE A:142 , GLY A:143 , HOH A:158 , HOH A:192 , HOH A:249 , HOH A:264 , SER B:69 , EDO B:148 , ILE C:65 , ALA C:81 , GLY C:82 , VAL C:83 , ASP C:85 , TYR C:88 , VAL C:92 , LYS C:93 , HOH C:263 , HOH C:379	BINDING SITE FOR RESIDUE UMP C 200
3	AC3	SOFTWARE	ALA A:81 , GLY A:82 , VAL A:83 , ASP A:85 , TYR A:88 , VAL A:92 , LYS A:93 , HOH A:205 , HOH A:211 , HOH A:229 , HOH A:353 , HOH A:376 , ARG B:137 , GLY B:141 , PHE B:142 , GLY B:143 , HOH B:171 , SER C:69 , PEG C:148	BINDING SITE FOR RESIDUE UMP A 200
4	AC4	SOFTWARE	ARG A:137 , HOH A:249 , HOH A:267 , ASP B:32 , GLN B:114 , HOH B:170 , HOH B:410 , UMP C:200 , HOH C:379	BINDING SITE FOR RESIDUE EDO B 148
5	AC5	SOFTWARE	VAL A:83 , ASP A:85 , UMP A:200 , HOH A:363 , HOH A:376 , ARG B:137 , THR C:22 , LYS C:23 , GLY C:24 , ALA C:28 , GLY C:30 , ASP C:32 , GLN C:114 , HOH C:187 , HOH C:460 , HOH C:470	BINDING SITE FOR RESIDUE PEG C 148
6	AC6	SOFTWARE	ARG A:137	BINDING SITE FOR RESIDUE NA A 148
7	AC7	SOFTWARE	ARG A:102 , ASP A:130 , HOH A:319 , HOH A:432 , HOH A:435 , HOH A:468 , GLN C:12 , LEU C:13 , ARG C:14 , HOH C:416	BINDING SITE FOR RESIDUE PEG C 149
8	AC8	SOFTWARE	LYS B:119 , HOH B:154 , LYS C:119	BINDING SITE FOR RESIDUE EDO B 149

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:138
 aligned with DUT_YEAST | P33317 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135        
            DUT_YEAST     6 DKVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFG 143
               SCOP domains d3f4fa_ A: automated matches                                                                                                               SCOP domains
               CATH domains 3f4fA00 A:6-143  [code=2.70.40.10, no name defined]                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee........ee.......eeee....eee...eeeeee..eeee....eeeeee.hhhhhhhhheeee..ee........eeeeee.....eee....eeeeeeeee.....eeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3f4f A   6 DKVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFG 143
                                    15        25        35        45        55        65        75        85        95       105       115       125       135

Chain B from PDB  Type:PROTEIN  Length:138
 aligned with DUT_YEAST | P33317 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:138
                                    15        25        35        45        55        65        75        85        95       105       115       125       135        
            DUT_YEAST     6 DKVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFG 143
               SCOP domains d3f4fb_ B: automated matches                                                                                                               SCOP domains
               CATH domains 3f4fB00 B:6-143  [code=2.70.40.10, no name defined]                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee........ee.......eeee....eee...eeeee...eeee....eeeeee.hhhhhhhhheee...ee.........eeeee.....eee....eeeeeeeee.....eeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3f4f B   6 DKVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFG 143
                                    15        25        35        45        55        65        75        85        95       105       115       125       135

Chain C from PDB  Type:PROTEIN  Length:137
 aligned with DUT_YEAST | P33317 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:137
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       
            DUT_YEAST     7 KVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFG 143
               SCOP domains d3f4fc_ C: automated matches                                                                                                              SCOP domains
               CATH domains 3f4fC00 C:7-143  [code=2.70.40.10, no name defined]                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........ee.......eeee....eee...eeeee...eeee....eeeeee.hhhhhhhhheeee..ee.........eeeee.....eee....eeeeeeeee.....eeeee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f4f C   7 KVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGAGGFG 143
                                    16        26        36        46        56        66        76        86        96       106       116       126       136

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (1, 3)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (DUT_YEAST | P33317)

molecular function
	GO:0035870	dITP diphosphatase activity	Catalysis of the reaction: dITP + H2O = dIMP + diphosphate.
	GO:0004170	dUTP diphosphatase activity	Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0035863	dITP catabolic process	The chemical reactions and pathways resulting in the breakdown of dITP, a deoxyinosine phosphate compound having a triphosphate group at the 5'-position.
	GO:0006226	dUMP biosynthetic process	The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
	GO:0046081	dUTP catabolic process	The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.
	GO:0046080	dUTP metabolic process	The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate.
	GO:0009117	nucleotide metabolic process	The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
	GO:0009213	pyrimidine deoxyribonucleoside triphosphate catabolic process	The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.

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	Cis Peptide Bonds
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	3f4f
		Family and Domain Information	:	ProDom \| SYSTERS
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	DUT_YEAST \| P33317
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	3.6.1.23
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (8, 8)