3P48 - JenaLib

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:68 , SER A:69 , GLY A:70 , GLN A:114 , MG A:149 , HOH A:164 , HOH A:168 , HOH A:176 , HOH A:178 , HOH A:186 , HOH A:211 , HOH A:246 , HOH A:247 , HOH A:260 , HOH A:406 , LYS C:74 , ALA C:81 , GLY C:82 , VAL C:83 , ASP C:85 , TYR C:88 , LYS C:93	BINDING SITE FOR RESIDUE DUP A 148
2	AC2	SOFTWARE	DUP A:148 , HOH A:168 , HOH A:246 , HOH A:247	BINDING SITE FOR RESIDUE MG A 149
3	AC3	SOFTWARE	ALA A:81 , GLY A:82 , VAL A:83 , ASP A:85 , TYR A:88 , VAL A:92 , LYS A:93 , ARG B:68 , SER B:69 , GLY B:70 , GLN B:114 , MG B:150 , HOH B:161 , HOH B:175 , HOH B:180 , HOH B:207 , HOH B:214 , HOH B:219 , HOH B:248 , HOH B:249 , HOH B:250 , HOH B:257 , HOH B:396	BINDING SITE FOR RESIDUE DUP B 148
4	AC4	SOFTWARE	ALA B:81 , GLY B:82 , VAL B:83 , ASP B:85 , TYR B:88 , VAL B:92 , LYS B:93 , HOH B:190 , HOH B:225 , HOH B:234 , HOH B:276 , HOH B:377 , MET C:48 , ARG C:68 , SER C:69 , GLY C:70 , GLN C:114 , MG C:148	BINDING SITE FOR RESIDUE DUP B 149
5	AC5	SOFTWARE	DUP B:148 , HOH B:248 , HOH B:249 , HOH B:250	BINDING SITE FOR RESIDUE MG B 150
6	AC6	SOFTWARE	DUP B:149 , HOH B:276 , ASP C:32	BINDING SITE FOR RESIDUE MG C 148

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:127
 aligned with DUT_YEAST | P33317 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:127
                                    16        26        36        46        56        66        76        86        96       106       116       126       
            DUT_YEAST     7 KVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLE 133
               SCOP domains d3p48a_ A: automated matches                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........ee.......eeee....eee...eeeeee..eeee....eeeeee.hhhhhhhhheee...ee........eeeeee.....eee....eeeeeeeee.....eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p48 A   7 KVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLE 133
                                    16        26        36        46        56        66        76        86        96       106       116       126

Chain B from PDB  Type:PROTEIN  Length:126
 aligned with DUT_YEAST | P33317 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:126
                                    16        26        36        46        56        66        76        86        96       106       116       126      
            DUT_YEAST     7 KVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSL 132
               SCOP domains d3p48b_ B: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee........ee.......eeee....eee....eeee...eeee....eeeeee.hhhhhhhhheeee..ee.........eeeee.....eee....eeeeeeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3p48 B   7 KVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSL 132
                                    16        26        36        46        56        66        76        86        96       106       116       126

Chain C from PDB  Type:PROTEIN  Length:128
 aligned with DUT_YEAST | P33317 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:128
                                    15        25        35        45        55        65        75        85        95       105       115       125        
            DUT_YEAST     6 DKVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLE 133
               SCOP domains d3p48c_ C: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------dUTPase-3p48C01 C:16-133                                                                                               Pfam domains (1)
           Pfam domains (2) ----------dUTPase-3p48C02 C:16-133                                                                                               Pfam domains (2)
           Pfam domains (3) ----------dUTPase-3p48C03 C:16-133                                                                                               Pfam domains (3)
         Sec.struct. author ..eeeeee.................eeee....eee...eeeeee..eeee....eeeeee.hhhhhhhhheee...ee........eeeeee.....eee....eeeeeeeee.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p48 C   6 DKVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLE 133
                                    15        25        35        45        55        65        75        85        95       105       115       125

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 3)

CATH Domains (0, 0)

Pfam Domains (1, 3)

Gene Ontology (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (DUT_YEAST | P33317)

molecular function
	GO:0035870	dITP diphosphatase activity	Catalysis of the reaction: dITP + H2O = dIMP + diphosphate.
	GO:0004170	dUTP diphosphatase activity	Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0035863	dITP catabolic process	The chemical reactions and pathways resulting in the breakdown of dITP, a deoxyinosine phosphate compound having a triphosphate group at the 5'-position.
	GO:0006226	dUMP biosynthetic process	The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
	GO:0046081	dUTP catabolic process	The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.
	GO:0046080	dUTP metabolic process	The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate.
	GO:0009117	nucleotide metabolic process	The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
	GO:0009213	pyrimidine deoxyribonucleoside triphosphate catabolic process	The chemical reactions and pathways resulting in the breakdown of pyrimidine deoxyribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with triphosphate on the sugar.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3p48)

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	3p48
		Family and Domain Information	:	ProDom \| SYSTERS
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	DUT_YEAST \| P33317
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	3.6.1.23
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)