3EZ3 - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PLASMODIUM VIVAX GERANYLGERANYLPYROPHOSPHATE SYNTHASE PVX_092040 WITH ZOLEDRONATE AND IPP BOUND

Authors :   A. K. Wernimont, J. Lew, Y. Zhao, I. Kozieradzki, D. Cossar, M. Schapira A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, J. D. Artz, Structural Genomics Consortium (Sgc)

Date :   22 Oct 08 (Deposition) - 02 Dec 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Malaria, Farnesyl Pyrophosphate Synthase Diphosphate, Lyase, Structural Genomics, Isoprene Biosynthesis, Transferase, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. K. Wernimont, J. Lew, Y. Zhao, I. Kozieradzki, D. Cossar, M. Schapira, A. Bochkarev, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, R. Hui, J. D. Artz
Crystal Structure Of Plasmodium Vivax Geranylgeranylpyrophosphate Synthase Pvx_092040 With Zoledronate And Ipp Bound
To Be Published
PubMed: search

Molecule 1 - FARNESYL PYROPHOSPHATE SYNTHASE, PUTATIVE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	P15-TEV-LIC
	Expression System Strain	:	DH5A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PVX_092040
	Organism Scientific	:	PLASMODIUM VIVAX
	Organism Taxid	:	5855
	Strain	:	SALVADORI

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 25)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	3	Ligand/Ion	GLYCEROL
3	IPE	4	Ligand/Ion	3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
4	MG	12	Ligand/Ion	MAGNESIUM ION
5	ZOL	4	Ligand/Ion	ZOLEDRONIC ACID

Biological Unit 1 (4, 8)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	2	Ligand/Ion	GLYCEROL
3	IPE	2	Ligand/Ion	3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	ZOL	2	Ligand/Ion	ZOLEDRONIC ACID

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
2	GOL	1	Ligand/Ion	GLYCEROL
3	IPE	2	Ligand/Ion	3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	ZOL	2	Ligand/Ion	ZOLEDRONIC ACID

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:126 , ASP A:130 , ARG A:135 , GLN A:195 , LYS A:243 , THR A:244 , GLN A:284 , ASP A:287 , LYS A:301 , IPE A:1101 , MG A:1102 , MG A:1103 , MG A:1104 , HOH A:1116 , HOH A:1117 , HOH A:1130 , HOH A:1142 , HOH A:1144 , HOH A:1155 , HOH A:1162 , HOH A:1164 , HOH A:1251	BINDING SITE FOR RESIDUE ZOL A 397
02	AC2	SOFTWARE	GLY A:80 , LYS A:81 , ARG A:84 , GLN A:119 , ARG A:136 , TYR A:247 , PHE A:283 , GLN A:284 , ZOL A:397 , HOH A:1118 , HOH A:1119 , HOH A:1167 , HOH A:1190 , HOH A:1206 , HOH A:1250	BINDING SITE FOR RESIDUE IPE A1101
03	AC3	SOFTWARE	ASP A:126 , ASP A:130 , ZOL A:397 , MG A:1103 , HOH A:1142 , HOH A:1164	BINDING SITE FOR RESIDUE MG A1102
04	AC4	SOFTWARE	ASP A:126 , ASP A:130 , ZOL A:397 , MG A:1102 , HOH A:1130 , HOH A:1143 , HOH A:1161 , HOH A:1162	BINDING SITE FOR RESIDUE MG A1103
05	AC5	SOFTWARE	ASP A:287 , ZOL A:397 , HOH A:1116 , HOH A:1144 , HOH A:1251	BINDING SITE FOR RESIDUE MG A1104
06	AC6	SOFTWARE	GLU A:58 , GLU A:60 , ILE A:61 , HOH A:1152 , MET B:230 , ASN B:232 , VAL B:235	BINDING SITE FOR RESIDUE EDO A1105
07	AC7	SOFTWARE	GLU A:133 , TYR A:139 , LEU A:143 , ILE B:218	BINDING SITE FOR RESIDUE GOL A1106
08	AC8	SOFTWARE	ASP B:126 , ASP B:130 , ARG B:135 , LYS B:243 , THR B:244 , GLN B:284 , ASP B:287 , LYS B:301 , IPE B:1101 , MG B:1102 , MG B:1103 , MG B:1104 , EDO B:1106 , HOH B:1135 , HOH B:1144 , HOH B:1149 , HOH B:1164 , HOH B:1187 , HOH B:1261	BINDING SITE FOR RESIDUE ZOL B 397
09	AC9	SOFTWARE	GLY B:80 , LYS B:81 , ARG B:84 , GLN B:119 , ARG B:136 , TYR B:247 , PHE B:283 , ZOL B:397 , HOH B:1136 , HOH B:1137 , HOH B:1193 , HOH B:1263 , HOH B:1268	BINDING SITE FOR RESIDUE IPE B1101
10	BC1	SOFTWARE	ASP B:126 , ASP B:130 , ZOL B:397 , MG B:1104 , HOH B:1144 , HOH B:1145 , HOH B:1186	BINDING SITE FOR RESIDUE MG B1102
11	BC2	SOFTWARE	ASP B:287 , ZOL B:397 , HOH B:1135 , HOH B:1149 , HOH B:1164	BINDING SITE FOR RESIDUE MG B1103
12	BC3	SOFTWARE	ASP B:126 , ASP B:130 , ZOL B:397 , MG B:1102 , HOH B:1162 , HOH B:1187	BINDING SITE FOR RESIDUE MG B1104
13	BC4	SOFTWARE	LEU B:290 , ASP B:291 , GLY B:294 , SER B:296 , THR B:299 , LYS B:301 , GLY B:303 , EDO B:1106	BINDING SITE FOR RESIDUE GOL B1105
14	BC5	SOFTWARE	ASP B:291 , LYS B:301 , VAL B:302 , GLY B:303 , ZOL B:397 , GOL B:1105 , HOH B:1149 , HOH B:1164	BINDING SITE FOR RESIDUE EDO B1106
15	BC6	SOFTWARE	ASP C:126 , ASP C:130 , ARG C:135 , GLN C:195 , LYS C:243 , THR C:244 , GLN C:284 , ASP C:287 , LYS C:301 , IPE C:1101 , MG C:1102 , MG C:1103 , MG C:1104 , HOH C:1110 , HOH C:1122 , HOH C:1167 , HOH C:1176 , HOH C:1191 , HOH C:1192 , HOH C:1212	BINDING SITE FOR RESIDUE ZOL C 397
16	BC7	SOFTWARE	GLY C:80 , LYS C:81 , ARG C:84 , GLN C:119 , ARG C:136 , TYR C:247 , PHE C:283 , GLN C:284 , ZOL C:397 , HOH C:1155 , HOH C:1162 , HOH C:1205 , HOH C:1211 , HOH C:1245	BINDING SITE FOR RESIDUE IPE C1101
17	BC8	SOFTWARE	ASP C:126 , ASP C:130 , ZOL C:397 , MG C:1103 , HOH C:1118 , HOH C:1192	BINDING SITE FOR RESIDUE MG C1102
18	BC9	SOFTWARE	ASP C:126 , ASP C:130 , ZOL C:397 , MG C:1102 , HOH C:1120 , HOH C:1122 , HOH C:1175	BINDING SITE FOR RESIDUE MG C1103
19	CC1	SOFTWARE	ASP C:287 , ZOL C:397 , HOH C:1110 , HOH C:1167 , HOH C:1191	BINDING SITE FOR RESIDUE MG C1104
20	CC2	SOFTWARE	ASP D:126 , ASP D:130 , ARG D:135 , LYS D:243 , THR D:244 , GLN D:284 , ASP D:287 , LYS D:301 , IPE D:1101 , MG D:1102 , MG D:1103 , MG D:1104 , HOH D:1150 , HOH D:1157 , HOH D:1158 , HOH D:1159 , HOH D:1163 , HOH D:1200 , HOH D:1245 , HOH D:1264	BINDING SITE FOR RESIDUE ZOL D 397
21	CC3	SOFTWARE	GLY D:80 , LYS D:81 , ARG D:84 , GLN D:119 , ARG D:136 , TYR D:247 , PHE D:283 , GLN D:284 , ZOL D:397 , HOH D:1165 , HOH D:1218 , HOH D:1230 , HOH D:1251 , HOH D:1255	BINDING SITE FOR RESIDUE IPE D1101
22	CC4	SOFTWARE	ASP D:126 , ASP D:130 , ZOL D:397 , MG D:1103 , HOH D:1157 , HOH D:1160 , HOH D:1200	BINDING SITE FOR RESIDUE MG D1102
23	CC5	SOFTWARE	ASP D:126 , ASP D:130 , ZOL D:397 , MG D:1102 , HOH D:1150 , HOH D:1158	BINDING SITE FOR RESIDUE MG D1103
24	CC6	SOFTWARE	ASP D:287 , ZOL D:397 , HOH D:1163 , HOH D:1173 , HOH D:1245	BINDING SITE FOR RESIDUE MG D1104
25	CC7	SOFTWARE	LYS B:343 , ASP D:291 , ILE D:292 , GLY D:303 , ASP D:305 , ILE D:306 , ASP D:346 , HOH D:1164	BINDING SITE FOR RESIDUE GOL D1105

(no "SS Bond" information available for 3EZ3)

(no "Cis Peptide Bond" information available for 3EZ3)

(no "SAP(SNP)/Variant" information available for 3EZ3)

(no "PROSITE Motif" information available for 3EZ3)

(no "Exon" information available for 3EZ3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:358
 aligned with A5K4U6_PLAVS | A5K4U6 from UniProtKB/TrEMBL  Length:375

    Alignment length:363
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372   
         A5K4U6_PLAVS    13 LAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGETRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVININMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 375
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..-.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......----...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ez3 A  34 LAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNR-INSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYS----EIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 396
                                    43        53        63        73        83        93    | |103       113       123       133       143       153       163       173       183       193       203   |   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393   
                                                                                           98 |                                                                                                        207  212                                                                                                                                                                                        
                                                                                            100

Chain B from PDB  Type:PROTEIN  Length:353
 aligned with A5K4U6_PLAVS | A5K4U6 from UniProtKB/TrEMBL  Length:375

    Alignment length:361
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374 
         A5K4U6_PLAVS    15 FFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGETRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVININMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 375
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh--.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ez3 B  36 FFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVK----NSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYS--HREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIA--NLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 396
                                    45        55        65        75        85        95|    | 105       115       125       135       145       155       165       175       185       195       205 |  |  215       225       235       245       255       | -|      275       285       295       305       315       325       335       345       355       365       375       385       395 
                                                                                       96  101                                                                                                       207  |                                                  263  |                                                                                                                                  
                                                                                                                                                                                                        210                                                     266

Chain C from PDB  Type:PROTEIN  Length:357
 aligned with A5K4U6_PLAVS | A5K4U6 from UniProtKB/TrEMBL  Length:375

    Alignment length:363
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372   
         A5K4U6_PLAVS    13 LAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGETRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVININMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 375
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.--.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......----...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ez3 C  34 LAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKN--INSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYS----EIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 396
                                    43        53        63        73        83        93   |  |103       113       123       133       143       153       163       173       183       193       203   |   213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393   
                                                                                          97  |                                                                                                        207  212                                                                                                                                                                                        
                                                                                            100

Chain D from PDB  Type:PROTEIN  Length:351
 aligned with A5K4U6_PLAVS | A5K4U6 from UniProtKB/TrEMBL  Length:375

    Alignment length:360
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375
         A5K4U6_PLAVS    16 FRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADDIMDKGETRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVININMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTGV 375
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh--.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..-hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ez3 D  37 FRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNRGILVILIYEYVK----NSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYS--HREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGI--DNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILSAINEL-HEGIEYVLKYLLEILFTGV 396
                                    46        56        66        76        86        96    |  106       116       126       136       146       156       166       176       186       196       206|  |   216       226       236       246       256     | 266       276       286       296       306       316       326       336       346       356       366       376 |     386       396
                                                                                      96  101                                                                                                       207  |                                                 262  |                                                                                                            376 |                  
                                                                                                                                                                                                       210                                                    265                                                                                                              378

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3EZ3)

(no "CATH Domain" information available for 3EZ3)

(no "Pfam Domain" information available for 3EZ3)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (A5K4U6_PLAVS | A5K4U6)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0008299	isoprenoid biosynthetic process	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		IPE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3ez3)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3ez3
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	A5K4U6_PLAVS \| A5K4U6
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

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		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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	A5K4U6_PLAVS \| A5K4U6
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UniProtKB/TrEMBL
	A5K4U6_PLAVS \| A5K4U6	:	3cc9 3ldw 3mav 3ph7 3rbm 3ryw 5hn7 5hn8 5hn9 5hna

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File