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Title :   CRYSTAL STRUCTURE OF THE BACILLUS ANTHRACIS PHENAZINE BIOSYNTHESIS PROTEIN, PHZF FAMILY

Authors :   S. M. Anderson, J. S. Brunzelle, O. Onopriyenko, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)

Date :   03 Sep 08 (Deposition) - 07 Oct 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   Diaminopimelate Epimerase-Like Fold, Alpha And Beta Protein Class, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. M. Anderson, J. S. Brunzelle, O. Onopriyenko, A. Savchenko, W. F. Anderson
Crystal Structure Of The Bacillus Anthracis Phenazine Biosynthesis Protein, Phzf Family
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PHENAZINE BIOSYNTHESIS PROTEIN, PHZF FAMILY
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	BAS3216, BA_3469, GBAA3469
	Organism Common	:	ANTHRAX,ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	1392
	Strain	:	AMES

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 37)

No.	Name	Count	Type	Full Name
1	MG	1	Ligand/Ion	MAGNESIUM ION
2	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
3	SIN	1	Ligand/Ion	SUCCINIC ACID
4	SO4	15	Ligand/Ion	SULFATE ION

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:12 , GLY A:74 , HIS A:75 , VAL A:228 , THR A:229 , GLY A:230 , THR A:231 , HOH A:366 , HOH A:375 , HOH A:404 , HOH A:463 , HOH A:487	BINDING SITE FOR RESIDUE SO4 A 300
02	AC2	SOFTWARE	PHE A:7 , ARG A:87 , GLU A:294 , HOH A:365 , HOH A:437 , HOH A:639 , HOH A:683 , HOH A:688 , GLU B:91 , GLU B:92	BINDING SITE FOR RESIDUE SO4 A 301
03	AC3	SOFTWARE	ARG A:38 , LYS A:42 , LYS A:129 , ASP A:130 , HOH A:502 , HOH A:616	BINDING SITE FOR RESIDUE SO4 A 302
04	AC4	SOFTWARE	ASN A:162 , TRP A:163 , ASN A:194 , HOH A:344 , HOH A:449 , HOH A:461 , HOH A:651 , HOH A:678 , HOH A:752	BINDING SITE FOR RESIDUE SO4 A 303
05	AC5	SOFTWARE	THR A:223 , ILE A:224 , GLU A:225 , HOH A:711	BINDING SITE FOR RESIDUE SO4 A 304
06	AC6	SOFTWARE	ASP A:206 , GLU A:207 , LYS A:208 , ARG A:267 , HOH A:722	BINDING SITE FOR RESIDUE SO4 A 305
07	AC7	SOFTWARE	PHE A:248 , ASP A:249 , HOH A:350 , HOH A:377 , HOH A:402 , HOH A:590 , HOH A:672 , GLU B:137 , HIS B:140	BINDING SITE FOR RESIDUE SO4 A 306
08	AC8	SOFTWARE	ARG A:85 , HOH A:472 , HOH A:480 , SER B:95 , HOH B:704 , HOH B:948	BINDING SITE FOR RESIDUE SO4 A 307
09	AC9	SOFTWARE	LEU A:31 , MSE A:36 , ARG A:60 , ARG A:62 , MG A:309 , HOH A:310 , HOH A:311 , LEU B:31 , MSE B:36 , ARG B:60 , ARG B:62 , HOH B:619 , HOH B:620	BINDING SITE FOR RESIDUE SIN A 308
10	BC1	SOFTWARE	SIN A:308 , HOH A:310 , HOH A:311 , HOH B:619 , HOH B:620	BINDING SITE FOR RESIDUE MG A 309
11	BC2	SOFTWARE	GLY B:74 , HIS B:75 , VAL B:228 , THR B:229 , GLY B:230 , THR B:231 , HOH B:780 , HOH B:787 , HOH B:791 , HOH B:822 , HOH B:920	BINDING SITE FOR RESIDUE SO4 B 300
12	BC3	SOFTWARE	SER B:196 , HIS B:215 , SER B:217 , SER B:218 , ALA B:221 , HOH B:747 , HOH B:810 , HOH B:868	BINDING SITE FOR RESIDUE SO4 B 301
13	BC4	SOFTWARE	GLU A:33 , ARG A:62 , LYS A:101 , LYS A:246 , GLU B:33 , GLU B:34 , HOH B:855 , HOH B:911	BINDING SITE FOR RESIDUE SO4 B 302
14	BC5	SOFTWARE	LYS B:129 , ASP B:130 , HOH B:799 , HOH B:882 , HOH B:930	BINDING SITE FOR RESIDUE SO4 B 303
15	BC6	SOFTWARE	THR B:223 , ILE B:224 , GLU B:225 , HOH B:979	BINDING SITE FOR RESIDUE SO4 B 304
16	BC7	SOFTWARE	HIS A:8 , HOH A:352 , HOH B:642 , HOH B:732 , HOH B:806 , HOH B:1013	BINDING SITE FOR RESIDUE SO4 B 305
17	BC8	SOFTWARE	HOH A:370 , GLN B:108 , LYS B:120 , HOH B:862	BINDING SITE FOR RESIDUE SO4 B 306

(no "SS Bond" information available for 3EDN)

(no "Cis Peptide Bond" information available for 3EDN)

(no "SAP(SNP)/Variant" information available for 3EDN)

(no "PROSITE Motif" information available for 3EDN)

(no "Exon" information available for 3EDN)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:299
 aligned with Q81MV2_BACAN | Q81MV2 from UniProtKB/TrEMBL  Length:299

    Alignment length:299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290         
         Q81MV2_BACAN     1 MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSEVADIRMRYFTPGYEMDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI 299
               SCOP domains d3edna1 A:1-131 automated matches                                                                                                  d3edna2 A:132-299 automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee........eeeeee......hhhhhhhhhhhhh...eeeee......eeeeee....ee..hhhhhhhhhhhhhhh.......eeeeee..eeeeeeeee.....eeeeee....eeee...hhhhhhhhh..hhhhh......eeee...eeeeee..hhhhhhhh..hhhhhhhhh......eeeeee.........eee.ee........ee..hhhhhhhhhhhhhhhh......eeeeeeee.hhhh..eeeeeeee........eeeeee.eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3edn A   1 mKTINVFHYDAFTNKPNmGNPAGIVLDADGLTEEEmQRIAEKVGFNETSFVLSSEVADIRmRYFTPGYEmDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKmRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERmKPNNEVFPSVLKEIPNASIHPICLETYDEKVHmHGRHFSSAYAGTIEDPVTGTASGVmGAYYATYVEKDFDHEmELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI 299
                            |       10       |20        30     |  40        50        60|       70        80        90       100       110       120|      130       140       150       160       170       180       190       200       210|      220       230     | 240       250 |     260       270       280       290         
                            |               18-MSE            36-MSE                   61-MSE   70-MSE                                            121-MSE                                                  178-MSE                          211-MSE                  236-MSE         252-MSE                                           
                            1-MSE

Chain B from PDB  Type:PROTEIN  Length:299
 aligned with Q81MV2_BACAN | Q81MV2 from UniProtKB/TrEMBL  Length:299

    Alignment length:299
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290         
         Q81MV2_BACAN     1 MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSEVADIRMRYFTPGYEMDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI 299
               SCOP domains d3ednb1 B:1-131 automated matches                                                                                                  d3ednb2 B:132-299 automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee........eeeeee......hhhhhhhhhhhhh...eeeee......eeeeee....ee..hhhhhhhhhhhhhhh.......eeeeee..eeeeeeeee.....eeeeee....eeee...hhhhhhhhh..hhhhh......eeee...eeeeee..hhhhhhhh..hhhhhhhhh......eeeeee.........eee.ee........ee..hhhhhhhhhhhhhhhh......eeeeeeee.hhhh..eeeeeeeeee....eeeeeeee.eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3edn B   1 mKTINVFHYDAFTNKPNmGNPAGIVLDADGLTEEEmQRIAEKVGFNETSFVLSSEVADIRmRYFTPGYEmDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKmRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERmKPNNEVFPSVLKEIPNASIHPICLETYDEKVHmHGRHFSSAYAGTIEDPVTGTASGVmGAYYATYVEKDFDHEmELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI 299
                            |       10       |20        30     |  40        50        60|       70        80        90       100       110       120|      130       140       150       160       170       180       190       200       210|      220       230     | 240       250 |     260       270       280       290         
                            1-MSE           18-MSE            36-MSE                   61-MSE   70-MSE                                            121-MSE                                                  178-MSE                          211-MSE                  236-MSE         252-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Diaminopimelate epimerase-like (37)

Superfamily: Diaminopimelate epimerase-like (37)

Family: automated matches (15)

Protein domain: automated matches (15)

Anthrax bacillus (Bacillus anthracis) [TaxId: 1392] (1)

1a	d3edna1	A:1-131
1b	d3edna2	A:132-299
1c	d3ednb1	B:1-131
1d	d3ednb2	B:132-299

(no "CATH Domain" information available for 3EDN)

(no "Pfam Domain" information available for 3EDN)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q81MV2_BACAN | Q81MV2)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Asymmetric/Biological Unit
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Ligands, Modified Residues, Ions (4, 37)

Sites (17, 17)

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