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(-) Description

Title :  CRYSTAL STRUCTURE OF A DOMAIN OF REPLICATION PROTEIN A FROM METHANOCOCCUS MARIPALUDIS. NORTHEAST STRUCTURAL GENOMICS TARGE MRR110B
 
Authors :  J. Seetharaman, Y. Chen, H. Wang, H. Janjua, E. L. Foote, R. Xiao, R. Nair, J. K. Everett, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  31 Jul 08  (Deposition) - 30 Sep 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Replication Protein A, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, Y. Chen, H. Wang, H. Janjua, E. L. Foote, R. Xiao, R. Nair, J. K. Everett, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of A Domain Of Replication Protein A From Methanococcus Maripaludis. Northeast Structural Genomics Targe Mrr110B
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - REPLICATION PROTEIN A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 173-267
    Gene: RPA, MMP1032
    Organism Scientific: METHANOCOCCUS MARIPALUDIS
    Organism Taxid: 39152

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:91
 aligned with Q6LYF9_METMP | Q6LYF9 from UniProtKB/TrEMBL  Length:642

    Alignment length:97
                                   181       191       201       211       221       231       241       251       261       
         Q6LYF9_METMP   172 DNYKISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEVSGYVKQGYSGLEISVDNIGIIEKSV 268
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhh...eeeeeeeeeeee...eee.----..eeeeeeeeee..eeeeeeee.hhhhh......eeeeeeeee..--..eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 3e0e A   0 mNYKISELmPNLSGTINAEVVTAYPKKEFS----TKGQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEVSGYVKQG--GLEISVDNIGIIEKSL  96
                            |       |9        19        29    |   39        49        59        69        |- |      89       
                            |       8-MSE               29   34                                          78 81               
                            0-MSE
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(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q6LYF9_METMP | Q6LYF9)
molecular function
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.

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        Q6LYF9_METMP | Q6LYF9: 2k5v

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