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(-) Description

Title :  SOLUTION NMR STRUCTURE OF THE SECOND OB-FOLD DOMAIN OF REPLICATION PROTEIN A FROM METHANOCOCCUS MARIPALUDIS. NORTHEAST STRUCTURAL GENOMICS TARGET MRR110B.
 
Authors :  J. M. Aramini, M. Maglaqui, M. Jiang, C. Ciccosanti, R. Xiao, R. Nair, J. K. Everett, G. Vt. Swapna, T. B. Acton, B. Rost, G. T. Montelione, Northeast Structural Genomics Consortium (Nesg)
Date :  30 Jun 08  (Deposition) - 19 Aug 08  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Solution Nmr Structure, Replication Protein A, Ob-Fold Domain, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Aramini, M. Maglaqui, M. Jiang, C. Ciccosanti, R. Xiao, R. Nair, J. K. Everett, G. Vt. Swapna, T. B. Acton, G. T. Montelione
Solution Nmr Structure Of The Second Ob-Fold Domain Of Replication Protein A From Methanococcus Maripaludis. Northeast Structural Genomics Target Mrr110B.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - REPLICATION PROTEIN A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MRR110B-21.1
    Expression System Strain: BL21(DE3)MGK
    Expression System Vector Type: PLASMID
    Gene: RPA, MMP1032
    Mutation: YES
    Organism Scientific: METHANOCOCCUS MARIPALUDIS
    Organism Taxid: 39152

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2K5V)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:98
 aligned with Q6LYF9_METMP | Q6LYF9 from UniProtKB/TrEMBL  Length:642

    Alignment length:98
                                   181       191       201       211       221       231       241       251       261        
         Q6LYF9_METMP   172 DNYKISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEVSGYVKQGYSGLEISVDNIGIIEKSVK 269
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------tRNA_anti-2k5vA01 A:186-264                                                    ----- Pfam domains
         Sec.struct. author ...hhhhh...eeeeeeeeeeeeeeeeeee.....eeeeeeeeeee..eeeeeeee.hhhhh......eeeeeeeeeee..eeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2k5v A 172 MNYKISELMPNLSGTINAEVVAAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEVSGYVKQGYSGLEISVDNIGIIEKSLE 269
                                   181       191       201       211       221       231       241       251       261
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2K5V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2K5V)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: OB (224)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q6LYF9_METMP | Q6LYF9)
molecular function
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.

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 Related Entries

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        Q6LYF9_METMP | Q6LYF9: 3e0e

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